Wall clock time and date at job start Tue Mar 31 2020 07:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00430 * 2 1 4 4 C 1.53000 * 109.46983 * 125.61677 * 3 2 1 5 5 S 1.81398 * 115.55260 * 294.63359 * 4 3 2 6 6 O 1.42102 * 110.54364 * 167.29560 * 5 4 3 7 7 O 1.42102 * 110.54015 * 30.54843 * 5 4 3 8 8 N 1.65592 * 104.45204 * 278.92405 * 5 4 3 9 9 C 1.46923 * 120.63297 * 86.30899 * 8 5 4 10 10 C 1.53194 * 108.77771 * 233.63103 * 9 8 5 11 11 C 1.53044 * 109.31024 * 305.36653 * 10 9 8 12 12 C 1.50699 * 109.45978 * 181.38547 * 11 10 9 13 13 H 1.08005 * 120.00005 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00132 * 180.02562 * 12 11 10 15 15 N 1.31522 * 120.00175 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00030 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46924 * 90.00344 * 16 14 12 18 18 H 1.48504 * 109.47124 * 210.00225 * 16 14 12 19 19 H 1.48496 * 109.47127 * 330.00539 * 16 14 12 20 20 C 1.53037 * 109.54101 * 61.36427 * 11 10 9 21 21 C 1.46929 * 120.62937 * 266.33022 * 8 5 4 22 22 C 1.53003 * 117.51767 * 80.34274 * 4 3 2 23 23 C 1.52998 * 60.00315 * 107.48005 * 22 4 3 24 24 H 1.07999 * 120.00521 * 185.05499 * 1 2 3 25 25 H 1.08009 * 119.99359 * 5.05005 * 1 2 3 26 26 H 1.08001 * 119.99722 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47083 * 5.61646 * 3 2 1 28 28 H 1.09003 * 109.47439 * 245.61886 * 3 2 1 29 29 H 1.09007 * 109.58673 * 113.84491 * 9 8 5 30 30 H 1.08997 * 109.70737 * 353.49056 * 9 8 5 31 31 H 1.08999 * 109.49787 * 185.41401 * 10 9 8 32 32 H 1.09000 * 109.49993 * 65.30974 * 10 9 8 33 33 H 1.09002 * 109.45906 * 301.34273 * 11 10 9 34 34 H 0.97003 * 120.00013 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.49753 * 58.58374 * 20 11 10 36 36 H 1.08994 * 109.50089 * 178.68475 * 20 11 10 37 37 H 1.08998 * 109.58969 * 246.15466 * 21 8 5 38 38 H 1.09001 * 109.58573 * 6.58252 * 21 8 5 39 39 H 1.09004 * 117.49661 * 214.97272 * 22 4 3 40 40 H 1.09000 * 117.49614 * 359.97438 * 22 4 3 41 41 H 1.09003 * 117.49595 * 252.51475 * 23 22 4 42 42 H 1.08997 * 117.50145 * 107.49118 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0461 1.3266 1.1727 5 16 2.2943 1.3192 2.8235 6 8 3.2740 1.0473 3.8163 7 8 1.0569 0.6208 2.8047 8 7 1.8687 2.8970 3.0909 9 6 0.5752 3.4130 2.6229 10 6 0.8215 4.6638 1.7733 11 6 1.6447 5.6700 2.5808 12 6 1.8601 6.9158 1.7606 13 1 1.4513 6.9830 0.7632 14 6 2.5800 7.9693 2.2829 15 7 2.7684 9.0562 1.5669 16 14 3.2877 7.8528 4.0077 17 1 4.6541 7.2747 3.9441 18 1 3.3516 9.2091 4.6092 19 1 2.4202 6.9820 4.8410 20 6 2.9995 5.0540 2.9376 21 6 2.7778 3.8076 3.8003 22 6 4.3727 0.5848 0.9971 23 6 4.3451 2.1145 0.9916 24 1 -0.5401 -0.9316 0.0824 25 1 -0.5399 0.9318 -0.0823 26 1 1.8500 -0.9353 -0.0004 27 1 1.3596 2.1311 0.1006 28 1 2.6127 1.4076 -0.9360 29 1 -0.0473 3.6702 3.4799 30 1 0.0733 2.6556 2.0209 31 1 -0.1338 5.1117 1.4997 32 1 1.3670 4.3889 0.8706 33 1 1.1100 5.9258 3.4956 34 1 3.2745 9.7976 1.9345 35 1 3.5243 4.7753 2.0238 36 1 3.5943 5.7794 3.4925 37 1 2.3349 4.0969 4.7533 38 1 3.7315 3.3094 3.9745 39 1 4.7937 0.0921 1.8736 40 1 4.5455 0.0808 0.0462 41 1 4.4999 2.6171 0.0368 42 1 4.7480 2.6283 1.8643 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190796283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:23 Heat of formation + Delta-G solvation = -24.284608 kcal Electronic energy + Delta-G solvation = -24133.849555 eV Core-core repulsion = 20821.481302 eV Total energy + Delta-G solvation = -3312.368252 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.30179 -37.90747 -37.12608 -35.80445 -33.95856 -33.42718 -31.24693 -30.60265 -27.61386 -25.96353 -22.95725 -22.84928 -22.44226 -21.87830 -19.84841 -19.56389 -18.31946 -17.30291 -17.09107 -16.68132 -15.90737 -15.17134 -14.75970 -14.50100 -14.18199 -13.82688 -13.76626 -13.62106 -13.17953 -13.11093 -12.83357 -12.51670 -12.25139 -12.16479 -11.91975 -11.77997 -11.65516 -11.60746 -11.29826 -11.16329 -11.05616 -10.72695 -10.49980 -10.32795 -10.19155 -10.03520 -9.75292 -9.38240 -9.24158 -9.11115 -8.57907 -8.44313 -6.11205 -4.10344 0.42318 2.27879 2.67429 3.21978 3.30948 3.34696 3.37078 3.97014 4.08399 4.36713 4.48810 4.55948 4.76452 4.92493 5.05890 5.16009 5.19214 5.34859 5.39532 5.50772 5.52791 5.65530 5.72837 5.76838 5.80939 5.84038 5.90573 5.95504 5.96812 6.11899 6.19369 6.34980 6.59751 6.63319 6.69192 6.77095 6.89932 6.94148 7.19426 7.48708 7.72576 8.48086 8.92882 9.51536 11.02042 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.005584 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.530523 B = 5013.081877 C = 5231.568374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.175 4.175 3 C -0.031 4.031 4 C -0.645 4.645 5 S 2.639 3.361 6 O -0.963 6.963 7 O -0.947 6.947 8 N -0.986 5.986 9 C 0.121 3.879 10 C -0.114 4.114 11 C 0.017 3.983 12 C -0.512 4.512 13 H 0.073 0.927 14 C 0.069 3.931 15 N -0.902 5.902 16 Si 0.883 3.117 17 H -0.278 1.278 18 H -0.298 1.298 19 H -0.264 1.264 20 C -0.136 4.136 21 C 0.117 3.883 22 C -0.129 4.129 23 C -0.112 4.112 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.537 -16.699 -1.642 16.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.193 4.193 3 C -0.069 4.069 4 C -0.733 4.733 5 S 2.730 3.270 6 O -0.954 6.954 7 O -0.938 6.938 8 N -0.825 5.825 9 C -0.004 4.004 10 C -0.153 4.153 11 C -0.002 4.002 12 C -0.550 4.550 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.540 5.540 16 Si 0.714 3.286 17 H -0.205 1.205 18 H -0.226 1.226 19 H -0.189 1.189 20 C -0.175 4.175 21 C -0.008 4.008 22 C -0.167 4.167 23 C -0.150 4.150 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.125 0.875 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.465 -17.237 -1.053 17.275 hybrid contribution 0.701 0.492 0.264 0.897 sum 1.167 -16.744 -0.789 16.803 Atomic orbital electron populations 1.23794 0.95745 1.02027 0.98079 1.22772 0.96182 0.97814 1.02536 1.19895 0.95823 0.96345 0.94801 1.32317 1.00703 1.17397 1.22863 1.04087 0.74324 0.73187 0.75384 1.93550 1.63697 1.83867 1.54256 1.93569 1.41690 1.71530 1.86964 1.57529 1.26142 1.28947 1.69874 1.21556 0.82932 0.97186 0.98722 1.21845 1.00834 0.94330 0.98247 1.19068 0.91082 0.93819 0.96199 1.21049 1.34030 0.97499 1.02408 0.90915 1.25032 0.95828 0.95219 0.97183 1.69902 1.41079 1.05732 1.37288 0.86907 0.79707 0.76342 0.85650 1.20520 1.22562 1.18875 1.22392 1.01345 0.94749 0.98984 1.21587 0.92292 0.91482 0.95456 1.22903 0.93188 0.95893 1.04758 1.22858 0.92782 0.93963 1.05400 0.88398 0.88430 0.87537 0.89983 0.90042 0.91437 0.90468 0.91501 0.92285 0.95398 0.92698 0.91561 0.92599 0.91522 0.90360 0.87261 0.87191 0.86781 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 13.83 29.01 0.40 -1.37 16 2 C -0.17 -1.96 8.20 -36.03 -0.30 -2.26 16 3 C -0.03 -0.35 5.54 -27.88 -0.15 -0.50 16 4 C -0.64 -7.77 2.16 -90.61 -0.20 -7.97 16 5 S 2.64 39.92 5.48 -107.50 -0.59 39.33 16 6 O -0.96 -16.59 16.18 -57.54 -0.93 -17.52 16 7 O -0.95 -15.74 14.98 -57.54 -0.86 -16.60 16 8 N -0.99 -15.69 3.22 -113.51 -0.37 -16.05 16 9 C 0.12 1.87 6.29 -3.71 -0.02 1.85 16 10 C -0.11 -2.01 5.30 -26.61 -0.14 -2.15 16 11 C 0.02 0.37 1.66 -91.73 -0.15 0.22 16 12 C -0.51 -13.50 9.14 -34.44 -0.31 -13.82 16 13 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 14 C 0.07 1.90 5.45 -17.82 -0.10 1.80 16 15 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 16 Si 0.88 21.04 24.38 -169.99 -4.14 16.90 16 17 H -0.28 -6.39 6.86 56.52 0.39 -6.00 16 18 H -0.30 -7.24 7.11 56.52 0.40 -6.83 16 19 H -0.26 -5.97 6.53 56.52 0.37 -5.60 16 20 C -0.14 -2.66 4.85 -26.61 -0.13 -2.79 16 21 C 0.12 1.98 6.33 -3.71 -0.02 1.95 16 22 C -0.13 -1.28 9.89 -26.73 -0.26 -1.55 16 23 C -0.11 -1.25 9.98 -26.73 -0.27 -1.52 16 24 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 25 H 0.10 1.04 7.86 -52.48 -0.41 0.63 16 26 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 27 H 0.08 0.96 7.64 -51.93 -0.40 0.56 16 28 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.06 7.11 -51.93 -0.37 0.69 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 33 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.18 3.24 -51.93 -0.17 1.01 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.08 1.21 6.99 -51.93 -0.36 0.85 16 39 H 0.11 1.07 7.91 -51.93 -0.41 0.66 16 40 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 340.81 15.07 5.14 5.14 Total: -1.00 -31.56 340.81 -9.38 -40.94 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.74 Total: 1.97 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: -1.66 Total: -28.10 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.41 Total: -42.05 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -1.79 Total: -34.12 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.14 Total: 16.90 kcal Atomic # 16 Polarization: 39.92 SS G_CDS: -0.59 Total: 39.33 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.56 -9.38 -40.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190796283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.655 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds