Wall clock time and date at job start Tue Mar 31 2020 07:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00430 * 2 1 4 4 C 1.53000 * 109.46983 * 125.61677 * 3 2 1 5 5 S 1.81398 * 115.55260 * 294.63359 * 4 3 2 6 6 O 1.42102 * 110.54364 * 167.29560 * 5 4 3 7 7 O 1.42102 * 110.54015 * 30.54843 * 5 4 3 8 8 N 1.65592 * 104.45204 * 278.92405 * 5 4 3 9 9 C 1.46923 * 120.63297 * 86.30899 * 8 5 4 10 10 C 1.53194 * 108.77771 * 233.63103 * 9 8 5 11 11 C 1.53044 * 109.31024 * 305.36653 * 10 9 8 12 12 C 1.50699 * 109.45978 * 181.38547 * 11 10 9 13 13 H 1.08005 * 120.00005 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00132 * 180.02562 * 12 11 10 15 15 N 1.31522 * 120.00175 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00030 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46924 * 90.00344 * 16 14 12 18 18 H 1.48504 * 109.47124 * 210.00225 * 16 14 12 19 19 H 1.48496 * 109.47127 * 330.00539 * 16 14 12 20 20 C 1.53037 * 109.54101 * 61.36427 * 11 10 9 21 21 C 1.46929 * 120.62937 * 266.33022 * 8 5 4 22 22 C 1.53003 * 117.51767 * 80.34274 * 4 3 2 23 23 C 1.52998 * 60.00315 * 107.48005 * 22 4 3 24 24 H 1.07999 * 120.00521 * 185.05499 * 1 2 3 25 25 H 1.08009 * 119.99359 * 5.05005 * 1 2 3 26 26 H 1.08001 * 119.99722 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47083 * 5.61646 * 3 2 1 28 28 H 1.09003 * 109.47439 * 245.61886 * 3 2 1 29 29 H 1.09007 * 109.58673 * 113.84491 * 9 8 5 30 30 H 1.08997 * 109.70737 * 353.49056 * 9 8 5 31 31 H 1.08999 * 109.49787 * 185.41401 * 10 9 8 32 32 H 1.09000 * 109.49993 * 65.30974 * 10 9 8 33 33 H 1.09002 * 109.45906 * 301.34273 * 11 10 9 34 34 H 0.97003 * 120.00013 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.49753 * 58.58374 * 20 11 10 36 36 H 1.08994 * 109.50089 * 178.68475 * 20 11 10 37 37 H 1.08998 * 109.58969 * 246.15466 * 21 8 5 38 38 H 1.09001 * 109.58573 * 6.58252 * 21 8 5 39 39 H 1.09004 * 117.49661 * 214.97272 * 22 4 3 40 40 H 1.09000 * 117.49614 * 359.97438 * 22 4 3 41 41 H 1.09003 * 117.49595 * 252.51475 * 23 22 4 42 42 H 1.08997 * 117.50145 * 107.49118 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0461 1.3266 1.1727 5 16 2.2943 1.3192 2.8235 6 8 3.2740 1.0473 3.8163 7 8 1.0569 0.6208 2.8047 8 7 1.8687 2.8970 3.0909 9 6 0.5752 3.4130 2.6229 10 6 0.8215 4.6638 1.7733 11 6 1.6447 5.6700 2.5808 12 6 1.8601 6.9158 1.7606 13 1 1.4513 6.9830 0.7632 14 6 2.5800 7.9693 2.2829 15 7 2.7684 9.0562 1.5669 16 14 3.2877 7.8528 4.0077 17 1 4.6541 7.2747 3.9441 18 1 3.3516 9.2091 4.6092 19 1 2.4202 6.9820 4.8410 20 6 2.9995 5.0540 2.9376 21 6 2.7778 3.8076 3.8003 22 6 4.3727 0.5848 0.9971 23 6 4.3451 2.1145 0.9916 24 1 -0.5401 -0.9316 0.0824 25 1 -0.5399 0.9318 -0.0823 26 1 1.8500 -0.9353 -0.0004 27 1 1.3596 2.1311 0.1006 28 1 2.6127 1.4076 -0.9360 29 1 -0.0473 3.6702 3.4799 30 1 0.0733 2.6556 2.0209 31 1 -0.1338 5.1117 1.4997 32 1 1.3670 4.3889 0.8706 33 1 1.1100 5.9258 3.4956 34 1 3.2745 9.7976 1.9345 35 1 3.5243 4.7753 2.0238 36 1 3.5943 5.7794 3.4925 37 1 2.3349 4.0969 4.7533 38 1 3.7315 3.3094 3.9745 39 1 4.7937 0.0921 1.8736 40 1 4.5455 0.0808 0.0462 41 1 4.4999 2.6171 0.0368 42 1 4.7480 2.6283 1.8643 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190796283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:22 Heat of formation + Delta-G solvation = -44.672114 kcal Electronic energy + Delta-G solvation = -24134.733623 eV Core-core repulsion = 20821.481302 eV Total energy + Delta-G solvation = -3313.252321 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.56868 -38.96086 -38.33653 -37.03414 -35.23139 -34.79666 -33.06079 -31.99868 -28.46213 -27.74502 -24.35172 -23.96862 -23.57482 -23.10890 -21.04545 -20.66779 -19.59353 -18.84176 -18.44993 -18.01917 -17.08666 -16.61413 -16.09777 -15.57417 -15.32398 -15.19541 -14.89165 -14.83138 -14.63428 -14.48202 -14.31042 -14.12426 -13.66113 -13.26964 -13.04801 -12.94406 -12.78904 -12.70388 -12.55240 -12.49338 -12.22356 -12.09742 -12.04963 -11.70011 -11.54494 -11.35350 -11.22292 -10.97943 -10.90002 -10.61027 -10.11230 -9.80797 -8.24883 -6.27377 -0.71488 1.32697 1.40037 1.42592 1.48895 1.57752 2.36248 2.37815 2.88483 3.02844 3.11322 3.54974 3.65248 3.77624 3.80111 4.14502 4.19671 4.27415 4.33808 4.34346 4.51465 4.56405 4.59374 4.61987 4.70416 4.70915 4.80116 4.87864 4.93978 4.97186 5.05819 5.07509 5.13236 5.21218 5.43278 5.49637 5.69219 5.74100 5.78890 5.82839 5.94626 6.37401 6.80453 7.38312 8.91764 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.005584 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.530523 B = 5013.081877 C = 5231.568374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.182 4.182 3 C -0.032 4.032 4 C -0.643 4.643 5 S 2.639 3.361 6 O -0.987 6.987 7 O -0.966 6.966 8 N -0.992 5.992 9 C 0.126 3.874 10 C -0.107 4.107 11 C 0.014 3.986 12 C -0.509 4.509 13 H 0.035 0.965 14 C 0.012 3.988 15 N -0.953 5.953 16 Si 0.940 3.060 17 H -0.262 1.262 18 H -0.306 1.306 19 H -0.244 1.244 20 C -0.132 4.132 21 C 0.120 3.880 22 C -0.112 4.112 23 C -0.118 4.118 24 H 0.106 0.894 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.022 0.978 34 H 0.263 0.737 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.137 0.863 41 H 0.125 0.875 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 -18.964 -1.315 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.200 4.200 3 C -0.070 4.070 4 C -0.735 4.735 5 S 2.735 3.265 6 O -0.978 6.978 7 O -0.957 6.957 8 N -0.829 5.829 9 C 0.001 3.999 10 C -0.146 4.146 11 C -0.005 4.005 12 C -0.547 4.547 13 H 0.053 0.947 14 C -0.185 4.185 15 N -0.594 5.594 16 Si 0.768 3.232 17 H -0.188 1.188 18 H -0.235 1.235 19 H -0.168 1.168 20 C -0.171 4.171 21 C -0.005 4.005 22 C -0.151 4.151 23 C -0.156 4.156 24 H 0.125 0.875 25 H 0.116 0.884 26 H 0.137 0.863 27 H 0.093 0.907 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.130 0.870 40 H 0.155 0.845 41 H 0.144 0.856 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.204 -19.532 -0.683 19.581 hybrid contribution 0.426 1.179 0.028 1.254 sum 1.630 -18.352 -0.656 18.436 Atomic orbital electron populations 1.23976 0.96101 1.02566 0.98224 1.22941 0.96331 0.98299 1.02387 1.19949 0.95731 0.96198 0.95119 1.31981 1.01446 1.19741 1.20342 1.03904 0.73821 0.72501 0.76233 1.93517 1.63982 1.84025 1.56256 1.93542 1.42730 1.71690 1.87694 1.57524 1.26152 1.28911 1.70287 1.21521 0.83149 0.96510 0.98755 1.21733 1.00115 0.94492 0.98242 1.19053 0.93017 0.92878 0.95542 1.21386 1.32510 0.99509 1.01327 0.94665 1.25840 0.96588 0.94840 1.01212 1.70058 1.42942 1.06868 1.39491 0.85976 0.80068 0.76168 0.81012 1.18802 1.23486 1.16818 1.22257 0.99546 0.95627 0.99698 1.21506 0.93454 0.90578 0.94962 1.23146 0.90395 0.95234 1.06286 1.23005 0.91708 0.95098 1.05831 0.87546 0.88448 0.86333 0.90735 0.88270 0.90975 0.88496 0.91677 0.91984 0.96035 0.92836 0.91034 0.93814 0.91225 0.88698 0.86956 0.84495 0.85647 0.87796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.50 13.83 67.78 0.94 -2.56 16 2 C -0.18 -3.60 8.20 25.64 0.21 -3.39 16 3 C -0.03 -0.63 5.54 29.85 0.17 -0.47 16 4 C -0.64 -13.66 2.16 -10.79 -0.02 -13.69 16 5 S 2.64 74.09 5.48 -56.49 -0.31 73.78 16 6 O -0.99 -31.97 16.18 -127.65 -2.06 -34.03 16 7 O -0.97 -30.25 14.98 -127.65 -1.91 -32.16 16 8 N -0.99 -29.43 3.22 -513.05 -1.65 -31.08 16 9 C 0.13 3.65 6.29 86.36 0.54 4.19 16 10 C -0.11 -3.68 5.30 30.67 0.16 -3.52 16 11 C 0.01 0.59 1.66 -11.51 -0.02 0.58 16 12 C -0.51 -27.31 9.14 25.60 0.23 -27.07 16 13 H 0.04 2.10 7.99 -2.91 -0.02 2.07 16 14 C 0.01 0.65 5.45 84.65 0.46 1.12 16 15 N -0.95 -58.18 13.96 21.45 0.30 -57.88 16 16 Si 0.94 43.21 24.38 68.60 1.67 44.88 16 17 H -0.26 -11.28 6.86 99.48 0.68 -10.60 16 18 H -0.31 -14.42 7.11 99.48 0.71 -13.71 16 19 H -0.24 -10.34 6.53 99.48 0.65 -9.69 16 20 C -0.13 -4.96 4.85 30.67 0.15 -4.81 16 21 C 0.12 3.79 6.33 86.36 0.55 4.34 16 22 C -0.11 -1.83 9.89 30.59 0.30 -1.52 16 23 C -0.12 -2.28 9.98 30.60 0.31 -1.98 16 24 H 0.11 1.92 8.06 -2.91 -0.02 1.90 16 25 H 0.10 1.93 7.86 -2.91 -0.02 1.90 16 26 H 0.12 2.03 8.06 -2.91 -0.02 2.00 16 27 H 0.07 1.58 7.64 -2.39 -0.02 1.56 16 28 H 0.10 1.63 8.09 -2.39 -0.02 1.61 16 29 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.10 2.46 7.11 -2.39 -0.02 2.44 16 31 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.06 2.08 8.09 -2.39 -0.02 2.06 16 33 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 34 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.07 2.56 8.14 -2.39 -0.02 2.55 16 36 H 0.04 1.75 3.24 -2.39 -0.01 1.74 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.09 2.69 6.99 -2.39 -0.02 2.68 16 39 H 0.11 1.82 7.91 -2.38 -0.02 1.80 16 40 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.10 2.13 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -68.43 340.81 0.91 -67.52 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.90 Total: 17.75 kcal Atomic # 6 Polarization: -52.76 SS G_CDS: 3.98 Total: -48.78 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -1.35 Total: -88.95 kcal Atomic # 8 Polarization: -62.21 SS G_CDS: -3.98 Total: -66.19 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.67 Total: 44.88 kcal Atomic # 16 Polarization: 74.09 SS G_CDS: -0.31 Total: 73.78 kcal Total: -68.43 0.91 -67.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190796283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.843 kcal (2) G-P(sol) polarization free energy of solvation -68.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds