Wall clock time and date at job start Tue Mar 31 2020 07:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38199 * 119.54958 * 2 1 4 4 C 1.38598 * 119.24564 * 179.73214 * 3 2 1 5 5 C 1.39057 * 118.38900 * 0.52674 * 4 3 2 6 6 O 1.35933 * 120.47755 * 179.75426 * 5 4 3 7 7 C 1.42897 * 116.99928 * 5.71779 * 6 5 4 8 8 H 1.08995 * 109.47365 * 33.84142 * 7 6 5 9 9 C 1.50704 * 109.47047 * 273.84248 * 7 6 5 10 10 H 1.08002 * 119.99921 * 120.00357 * 9 7 6 11 11 C 1.37874 * 119.99960 * 299.99934 * 9 7 6 12 12 N 1.31513 * 120.00114 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00028 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47443 * 59.99509 * 13 11 9 15 15 H 1.48506 * 109.47307 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46909 * 299.99640 * 13 11 9 17 17 C 1.53002 * 109.47291 * 153.84223 * 7 6 5 18 18 N 1.46900 * 109.47091 * 294.49009 * 17 7 6 19 19 C 1.46896 * 109.47432 * 64.90285 * 18 17 7 20 20 C 1.46904 * 109.47130 * 184.90551 * 18 17 7 21 21 C 1.46900 * 109.46690 * 304.90072 * 18 17 7 22 22 C 1.38864 * 119.04482 * 359.73776 * 5 4 3 23 23 Cl 1.73605 * 119.67148 * 180.02562 * 22 5 4 24 24 N 1.31887 * 119.54711 * 180.27259 * 2 1 3 25 25 H 1.08997 * 109.46817 * 269.73053 * 1 2 3 26 26 H 1.08999 * 109.47191 * 149.73047 * 1 2 3 27 27 H 1.08999 * 109.47035 * 29.72596 * 1 2 3 28 28 H 1.08001 * 120.37914 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.80745 * 180.23886 * 4 3 2 30 30 H 0.97006 * 120.00450 * 180.02562 * 12 11 9 31 31 H 1.09007 * 109.47038 * 54.48586 * 17 7 6 32 32 H 1.09002 * 109.47465 * 174.48433 * 17 7 6 33 33 H 1.08998 * 109.46974 * 52.37287 * 19 18 17 34 34 H 1.08998 * 109.47438 * 172.38050 * 19 18 17 35 35 H 1.09005 * 109.46827 * 292.37571 * 19 18 17 36 36 H 1.09000 * 109.47086 * 59.99338 * 20 18 17 37 37 H 1.08996 * 109.47190 * 179.97438 * 20 18 17 38 38 H 1.09002 * 109.46794 * 299.99831 * 20 18 17 39 39 H 1.09006 * 109.47276 * 60.00525 * 21 18 17 40 40 H 1.08996 * 109.47069 * 180.02562 * 21 18 17 41 41 H 1.08998 * 109.47538 * 300.00045 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1886 1.2022 0.0000 4 6 3.5746 1.1949 0.0057 5 6 4.2293 -0.0319 -0.0001 6 8 5.5874 -0.0886 0.0001 7 6 6.2884 1.1495 0.1332 8 1 5.7203 1.8213 0.7766 9 6 6.4582 1.7792 -1.2254 10 1 6.0392 2.7545 -1.4247 11 6 7.1484 1.1103 -2.2139 12 7 7.6582 -0.0775 -1.9713 13 14 7.3595 1.8911 -3.8977 14 1 8.0882 3.1775 -3.7590 15 1 8.1329 0.9755 -4.7745 16 1 6.0245 2.1407 -4.4984 17 6 7.6640 0.8928 0.7519 18 7 7.4988 0.4022 2.1266 19 6 6.8310 -0.9060 2.1028 20 6 8.8173 0.2675 2.7603 21 6 6.6829 1.3547 2.8916 22 6 3.4756 -1.1982 -0.0057 23 17 4.2762 -2.7387 -0.0122 24 7 2.1574 -1.1473 -0.0055 25 1 -0.3633 -0.0048 1.0276 26 1 -0.3633 -0.8875 -0.5180 27 1 -0.3633 0.8924 -0.5096 28 1 1.6475 2.1369 -0.0004 29 1 4.1326 2.1195 0.0097 30 1 8.1441 -0.5481 -2.6666 31 1 8.1946 0.1461 0.1610 32 1 8.2361 1.8206 0.7634 33 1 7.3640 -1.5737 1.4260 34 1 6.8292 -1.3314 3.1064 35 1 5.8040 -0.7834 1.7584 36 1 9.3128 1.2382 2.7779 37 1 8.6947 -0.0961 3.7805 38 1 9.4226 -0.4392 2.1926 39 1 5.7046 1.4547 2.4215 40 1 6.5607 0.9910 3.9118 41 1 7.1785 2.3254 2.9093 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229430299.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:51 Heat of formation + Delta-G solvation = 97.193583 kcal Electronic energy + Delta-G solvation = -23836.842240 eV Core-core repulsion = 20475.927800 eV Total energy + Delta-G solvation = -3360.914441 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.44789 -41.31326 -38.97924 -37.26470 -34.92313 -33.01564 -32.87159 -31.68565 -30.46143 -30.27282 -28.15244 -27.65272 -25.14195 -24.61180 -23.43096 -22.11581 -19.49824 -19.07139 -18.65126 -18.30671 -17.81763 -17.55122 -16.87891 -16.32600 -15.94872 -15.37747 -15.06210 -15.04860 -14.85390 -14.68179 -14.33992 -14.17918 -14.04560 -13.96613 -13.80848 -13.62596 -13.54822 -13.25365 -12.92043 -12.78904 -12.54858 -12.21283 -12.14970 -11.88177 -11.84591 -11.34194 -11.03617 -10.50128 -10.38765 -10.22612 -8.86135 -7.86440 -6.10603 0.17131 0.24681 0.41948 1.17864 2.03677 2.14225 2.18204 2.22149 2.26947 2.30736 2.49862 2.80855 2.93725 3.08350 3.14103 3.34386 3.43443 3.57078 3.61514 3.62351 3.64923 3.70889 3.75523 3.90316 3.97577 4.04304 4.08789 4.20069 4.24912 4.44090 4.49190 4.77918 4.79192 4.92823 5.09996 5.22730 5.22891 5.59952 5.95533 6.13761 6.52974 6.98382 7.07817 7.75496 9.15637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.092 3.908 3 C -0.128 4.128 4 C -0.148 4.148 5 C 0.117 3.883 6 O -0.287 6.287 7 C 0.189 3.811 8 H 0.048 0.952 9 C -0.571 4.571 10 H 0.079 0.921 11 C 0.094 3.906 12 N -0.854 5.854 13 Si 0.903 3.097 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.268 1.268 17 C -0.001 4.001 18 N -0.273 5.273 19 C -0.044 4.044 20 C -0.040 4.040 21 C -0.047 4.047 22 C 0.132 3.868 23 Cl -0.028 7.028 24 N -0.445 5.445 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.140 0.860 29 H 0.153 0.847 30 H 0.282 0.718 31 H 0.161 0.839 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.206 2.791 16.075 16.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.046 4.046 3 C -0.148 4.148 4 C -0.175 4.175 5 C 0.066 3.934 6 O -0.199 6.199 7 C 0.135 3.865 8 H 0.065 0.935 9 C -0.607 4.607 10 H 0.097 0.903 11 C -0.117 4.117 12 N -0.487 5.487 13 Si 0.729 3.271 14 H -0.193 1.193 15 H -0.202 1.202 16 H -0.193 1.193 17 C -0.119 4.119 18 N 0.068 4.932 19 C -0.185 4.185 20 C -0.182 4.182 21 C -0.189 4.189 22 C -0.033 4.033 23 Cl 0.001 6.999 24 N -0.157 5.157 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.158 0.842 29 H 0.170 0.830 30 H 0.092 0.908 31 H 0.178 0.822 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.119 0.881 35 H 0.148 0.852 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.097 1.550 15.975 16.346 hybrid contribution 0.693 1.110 -1.172 1.757 sum 3.790 2.660 14.802 15.510 Atomic orbital electron populations 1.20648 0.88245 1.03664 1.03007 1.20978 0.96926 0.87069 0.99598 1.21921 0.94162 0.99350 0.99375 1.21790 0.94912 0.97761 1.03026 1.19425 0.85550 0.92344 0.96081 1.86403 1.12219 1.36247 1.85079 1.20430 0.86175 0.81888 0.97974 0.93484 1.21148 1.39373 1.05518 0.94632 0.90277 1.25026 0.92631 0.94048 1.00043 1.69593 1.31831 1.11486 1.35771 0.86381 0.79559 0.79561 0.81616 1.19290 1.20237 1.19269 1.24870 1.04791 1.06335 0.75915 1.46398 1.14162 1.15368 1.17228 1.24375 1.04522 0.83015 1.06610 1.24007 0.83885 1.08283 1.02029 1.24061 0.99969 0.95643 0.99228 1.20905 0.88900 0.86424 1.07115 1.98395 1.76989 1.27846 1.96702 1.66801 1.06943 1.30301 1.11686 0.90583 0.90453 0.90576 0.84235 0.82959 0.90812 0.82161 0.85716 0.85942 0.88086 0.85220 0.86790 0.87161 0.86425 0.86622 0.87051 0.86483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.02 10.17 36.01 0.37 0.35 16 2 C 0.09 0.25 6.78 -82.58 -0.56 -0.31 16 3 C -0.13 -0.16 9.73 -39.46 -0.38 -0.54 16 4 C -0.15 -0.25 8.83 -39.15 -0.35 -0.59 16 5 C 0.12 0.34 6.04 -39.05 -0.24 0.10 16 6 O -0.29 -0.50 5.60 -19.53 -0.11 -0.61 16 7 C 0.19 -0.02 1.35 -27.88 -0.04 -0.06 16 8 H 0.05 -0.13 4.04 -51.93 -0.21 -0.34 16 9 C -0.57 -3.18 8.15 -34.44 -0.28 -3.46 16 10 H 0.08 0.51 7.81 -52.49 -0.41 0.10 16 11 C 0.09 0.75 5.24 -17.82 -0.09 0.65 16 12 N -0.85 -6.81 10.93 55.43 0.61 -6.20 16 13 Si 0.90 7.68 29.54 -169.99 -5.02 2.66 16 14 H -0.27 -2.29 7.11 56.52 0.40 -1.89 16 15 H -0.28 -2.68 7.11 56.52 0.40 -2.28 16 16 H -0.27 -2.67 7.11 56.52 0.40 -2.27 16 17 C 0.00 0.00 3.56 -3.82 -0.01 -0.01 16 18 N -0.27 2.70 0.05 -395.62 -0.02 2.68 16 19 C -0.04 0.36 7.21 60.06 0.43 0.79 16 20 C -0.04 0.51 8.00 60.07 0.48 0.99 16 21 C -0.05 0.54 7.53 60.06 0.45 0.99 16 22 C 0.13 0.58 7.29 -17.28 -0.13 0.46 16 23 Cl -0.03 -0.11 28.66 -51.86 -1.49 -1.59 16 24 N -0.45 -2.22 10.25 -6.50 -0.07 -2.29 16 25 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 26 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 27 H 0.08 -0.11 8.07 -51.93 -0.42 -0.53 16 28 H 0.14 -0.20 8.06 -52.49 -0.42 -0.62 16 29 H 0.15 0.05 5.87 -52.49 -0.31 -0.25 16 30 H 0.28 2.51 8.31 -40.82 -0.34 2.18 16 31 H 0.16 -0.23 6.09 -51.92 -0.32 -0.55 16 32 H 0.12 -0.72 8.09 -51.93 -0.42 -1.14 16 33 H 0.12 -0.80 7.97 -51.93 -0.41 -1.21 16 34 H 0.10 -1.11 8.04 -51.93 -0.42 -1.53 16 35 H 0.13 -0.67 4.98 -51.93 -0.26 -0.93 16 36 H 0.11 -1.53 8.11 -51.93 -0.42 -1.95 16 37 H 0.11 -1.58 8.09 -51.93 -0.42 -2.00 16 38 H 0.12 -1.41 8.14 -51.93 -0.42 -1.83 16 39 H 0.12 -1.11 5.89 -51.93 -0.31 -1.42 16 40 H 0.11 -1.51 8.14 -51.93 -0.42 -1.93 16 41 H 0.12 -1.48 8.14 -51.93 -0.42 -1.91 16 LS Contribution 336.38 15.07 5.07 5.07 Total: 0.00 -16.69 336.38 -7.36 -24.05 By element: Atomic # 1 Polarization: -17.15 SS G_CDS: -5.99 Total: -23.14 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -0.34 Total: -0.63 kcal Atomic # 7 Polarization: -6.33 SS G_CDS: 0.52 Total: -5.81 kcal Atomic # 8 Polarization: -0.50 SS G_CDS: -0.11 Total: -0.61 kcal Atomic # 14 Polarization: 7.68 SS G_CDS: -5.02 Total: 2.66 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.49 Total: -1.59 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -16.69 -7.36 -24.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229430299.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.247 kcal (2) G-P(sol) polarization free energy of solvation -16.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds