Wall clock time and date at job start Tue Mar 31 2020 07:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38199 * 119.54958 * 2 1 4 4 C 1.38598 * 119.24564 * 179.73214 * 3 2 1 5 5 C 1.39057 * 118.38900 * 0.52674 * 4 3 2 6 6 O 1.35933 * 120.47755 * 179.75426 * 5 4 3 7 7 C 1.42897 * 116.99928 * 5.71779 * 6 5 4 8 8 H 1.08995 * 109.47365 * 33.84142 * 7 6 5 9 9 C 1.50704 * 109.47047 * 273.84248 * 7 6 5 10 10 H 1.08002 * 119.99921 * 120.00357 * 9 7 6 11 11 C 1.37874 * 119.99960 * 299.99934 * 9 7 6 12 12 N 1.31513 * 120.00114 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00028 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47443 * 59.99509 * 13 11 9 15 15 H 1.48506 * 109.47307 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46909 * 299.99640 * 13 11 9 17 17 C 1.53002 * 109.47291 * 153.84223 * 7 6 5 18 18 N 1.46900 * 109.47091 * 294.49009 * 17 7 6 19 19 C 1.46896 * 109.47432 * 64.90285 * 18 17 7 20 20 C 1.46904 * 109.47130 * 184.90551 * 18 17 7 21 21 C 1.46900 * 109.46690 * 304.90072 * 18 17 7 22 22 C 1.38864 * 119.04482 * 359.73776 * 5 4 3 23 23 Cl 1.73605 * 119.67148 * 180.02562 * 22 5 4 24 24 N 1.31887 * 119.54711 * 180.27259 * 2 1 3 25 25 H 1.08997 * 109.46817 * 269.73053 * 1 2 3 26 26 H 1.08999 * 109.47191 * 149.73047 * 1 2 3 27 27 H 1.08999 * 109.47035 * 29.72596 * 1 2 3 28 28 H 1.08001 * 120.37914 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.80745 * 180.23886 * 4 3 2 30 30 H 0.97006 * 120.00450 * 180.02562 * 12 11 9 31 31 H 1.09007 * 109.47038 * 54.48586 * 17 7 6 32 32 H 1.09002 * 109.47465 * 174.48433 * 17 7 6 33 33 H 1.08998 * 109.46974 * 52.37287 * 19 18 17 34 34 H 1.08998 * 109.47438 * 172.38050 * 19 18 17 35 35 H 1.09005 * 109.46827 * 292.37571 * 19 18 17 36 36 H 1.09000 * 109.47086 * 59.99338 * 20 18 17 37 37 H 1.08996 * 109.47190 * 179.97438 * 20 18 17 38 38 H 1.09002 * 109.46794 * 299.99831 * 20 18 17 39 39 H 1.09006 * 109.47276 * 60.00525 * 21 18 17 40 40 H 1.08996 * 109.47069 * 180.02562 * 21 18 17 41 41 H 1.08998 * 109.47538 * 300.00045 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1886 1.2022 0.0000 4 6 3.5746 1.1949 0.0057 5 6 4.2293 -0.0319 -0.0001 6 8 5.5874 -0.0886 0.0001 7 6 6.2884 1.1495 0.1332 8 1 5.7203 1.8213 0.7766 9 6 6.4582 1.7792 -1.2254 10 1 6.0392 2.7545 -1.4247 11 6 7.1484 1.1103 -2.2139 12 7 7.6582 -0.0775 -1.9713 13 14 7.3595 1.8911 -3.8977 14 1 8.0882 3.1775 -3.7590 15 1 8.1329 0.9755 -4.7745 16 1 6.0245 2.1407 -4.4984 17 6 7.6640 0.8928 0.7519 18 7 7.4988 0.4022 2.1266 19 6 6.8310 -0.9060 2.1028 20 6 8.8173 0.2675 2.7603 21 6 6.6829 1.3547 2.8916 22 6 3.4756 -1.1982 -0.0057 23 17 4.2762 -2.7387 -0.0122 24 7 2.1574 -1.1473 -0.0055 25 1 -0.3633 -0.0048 1.0276 26 1 -0.3633 -0.8875 -0.5180 27 1 -0.3633 0.8924 -0.5096 28 1 1.6475 2.1369 -0.0004 29 1 4.1326 2.1195 0.0097 30 1 8.1441 -0.5481 -2.6666 31 1 8.1946 0.1461 0.1610 32 1 8.2361 1.8206 0.7634 33 1 7.3640 -1.5737 1.4260 34 1 6.8292 -1.3314 3.1064 35 1 5.8040 -0.7834 1.7584 36 1 9.3128 1.2382 2.7779 37 1 8.6947 -0.0961 3.7805 38 1 9.4226 -0.4392 2.1926 39 1 5.7046 1.4547 2.4215 40 1 6.5607 0.9910 3.9118 41 1 7.1785 2.3254 2.9093 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229430299.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:50 Heat of formation + Delta-G solvation = 93.794707 kcal Electronic energy + Delta-G solvation = -23836.989627 eV Core-core repulsion = 20475.927800 eV Total energy + Delta-G solvation = -3361.061827 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.84814 -41.38714 -39.03952 -37.49957 -35.27044 -33.17233 -32.99995 -31.62829 -29.56690 -29.48684 -28.04795 -27.80396 -25.06333 -24.52635 -23.35469 -22.08380 -19.65856 -18.76934 -18.21419 -17.82856 -17.68383 -17.47768 -16.86021 -16.61505 -16.22205 -15.35717 -15.11959 -14.92185 -14.49804 -14.35730 -13.99932 -13.74269 -13.53612 -13.35352 -13.27070 -13.23241 -13.18128 -13.15748 -12.97243 -12.92507 -12.83369 -12.67953 -12.52047 -12.24616 -12.12195 -11.44514 -11.34878 -10.89570 -10.62267 -10.54823 -9.03383 -8.41307 -6.59159 0.01033 0.26319 0.96224 0.99038 1.32141 1.41963 1.49511 2.22410 2.28362 2.64767 2.82805 3.04868 3.09166 3.22580 3.50896 3.78516 3.88362 3.98962 4.00797 4.12771 4.20821 4.28923 4.32520 4.36594 4.40529 4.47621 4.59203 4.66031 4.74058 4.78865 4.80537 4.82872 4.90342 5.00736 5.09057 5.15066 5.23711 5.51561 5.57265 5.72689 6.29983 6.65273 6.84953 7.24215 8.56114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.078 3.922 3 C -0.121 4.121 4 C -0.150 4.150 5 C 0.113 3.887 6 O -0.286 6.286 7 C 0.182 3.818 8 H 0.079 0.921 9 C -0.567 4.567 10 H 0.068 0.932 11 C 0.075 3.925 12 N -0.861 5.861 13 Si 0.913 3.087 14 H -0.267 1.267 15 H -0.299 1.299 16 H -0.292 1.292 17 C 0.016 3.984 18 N -0.259 5.259 19 C -0.044 4.044 20 C -0.043 4.043 21 C -0.054 4.054 22 C 0.109 3.891 23 Cl -0.037 7.037 24 N -0.475 5.475 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.170 0.830 29 H 0.167 0.833 30 H 0.268 0.732 31 H 0.131 0.869 32 H 0.144 0.856 33 H 0.101 0.899 34 H 0.137 0.863 35 H 0.102 0.898 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.141 0.859 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.232 4.228 19.096 19.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.061 4.061 3 C -0.141 4.141 4 C -0.177 4.177 5 C 0.062 3.938 6 O -0.198 6.198 7 C 0.128 3.872 8 H 0.097 0.903 9 C -0.604 4.604 10 H 0.086 0.914 11 C -0.134 4.134 12 N -0.496 5.496 13 Si 0.743 3.257 14 H -0.192 1.192 15 H -0.225 1.225 16 H -0.218 1.218 17 C -0.105 4.105 18 N 0.083 4.917 19 C -0.186 4.186 20 C -0.183 4.183 21 C -0.195 4.195 22 C -0.056 4.056 23 Cl -0.009 7.009 24 N -0.188 5.188 25 H 0.108 0.892 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.188 0.812 29 H 0.184 0.816 30 H 0.078 0.922 31 H 0.149 0.851 32 H 0.162 0.838 33 H 0.120 0.880 34 H 0.155 0.845 35 H 0.120 0.880 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.160 0.840 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.137 2.997 19.007 19.496 hybrid contribution 0.602 0.737 -2.074 2.282 sum 3.739 3.734 16.933 17.739 Atomic orbital electron populations 1.20717 0.86679 1.03982 1.03959 1.21485 0.98124 0.87083 0.99390 1.22254 0.94093 1.00048 0.97698 1.22013 0.95383 0.97681 1.02595 1.19510 0.86087 0.92365 0.95865 1.86449 1.11792 1.36584 1.85004 1.20607 0.88588 0.81897 0.96104 0.90327 1.21441 1.37034 1.04836 0.97095 0.91357 1.25122 0.94141 0.94476 0.99635 1.69686 1.33547 1.11679 1.34656 0.86317 0.77623 0.79155 0.82631 1.19161 1.22533 1.21832 1.24174 1.01140 1.06512 0.78663 1.46020 1.15910 1.14841 1.14925 1.24276 1.02521 0.83614 1.08162 1.24216 0.81933 1.09252 1.02885 1.24287 0.98793 0.96293 1.00083 1.21010 0.89152 0.86607 1.08782 1.98376 1.77144 1.28555 1.96850 1.66765 1.07435 1.31770 1.12784 0.89243 0.91727 0.88632 0.81210 0.81586 0.92226 0.85097 0.83848 0.88041 0.84472 0.87972 0.85192 0.84281 0.87342 0.88519 0.84048 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.01 10.17 71.24 0.72 0.74 16 2 C 0.08 0.43 6.78 42.54 0.29 0.71 16 3 C -0.12 -0.17 9.73 22.35 0.22 0.04 16 4 C -0.15 -0.42 8.83 22.55 0.20 -0.22 16 5 C 0.11 0.72 6.04 22.62 0.14 0.85 16 6 O -0.29 -1.20 5.60 -92.80 -0.52 -1.72 16 7 C 0.18 -0.08 1.35 29.85 0.04 -0.04 16 8 H 0.08 -0.55 4.04 -2.39 -0.01 -0.56 16 9 C -0.57 -6.62 8.15 25.60 0.21 -6.41 16 10 H 0.07 0.90 7.81 -2.91 -0.02 0.88 16 11 C 0.07 1.32 5.24 84.65 0.44 1.76 16 12 N -0.86 -15.57 10.93 21.45 0.23 -15.34 16 13 Si 0.91 17.77 29.54 68.60 2.03 19.80 16 14 H -0.27 -4.96 7.11 99.48 0.71 -4.26 16 15 H -0.30 -6.76 7.11 99.48 0.71 -6.06 16 16 H -0.29 -6.67 7.11 99.48 0.71 -5.96 16 17 C 0.02 -0.15 3.56 86.30 0.31 0.16 16 18 N -0.26 5.57 0.05 ******* -0.07 5.50 16 19 C -0.04 0.74 7.21 127.69 0.92 1.66 16 20 C -0.04 1.18 8.00 127.69 1.02 2.20 16 21 C -0.05 1.38 7.53 127.69 0.96 2.34 16 22 C 0.11 1.11 7.29 84.83 0.62 1.73 16 23 Cl -0.04 -0.36 28.66 -2.72 -0.08 -0.44 16 24 N -0.47 -5.26 10.25 -174.48 -1.79 -7.05 16 25 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 26 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 27 H 0.09 -0.41 8.07 -2.39 -0.02 -0.43 16 28 H 0.17 -0.89 8.06 -2.91 -0.02 -0.91 16 29 H 0.17 -0.10 5.87 -2.91 -0.02 -0.12 16 30 H 0.27 5.55 8.31 -92.70 -0.77 4.78 16 31 H 0.13 -0.28 6.09 -2.38 -0.01 -0.29 16 32 H 0.14 -1.90 8.09 -2.39 -0.02 -1.92 16 33 H 0.10 -1.21 7.97 -2.39 -0.02 -1.23 16 34 H 0.14 -3.31 8.04 -2.39 -0.02 -3.33 16 35 H 0.10 -1.03 4.98 -2.38 -0.01 -1.04 16 36 H 0.13 -3.92 8.11 -2.39 -0.02 -3.94 16 37 H 0.14 -4.54 8.09 -2.39 -0.02 -4.55 16 38 H 0.11 -2.70 8.14 -2.39 -0.02 -2.72 16 39 H 0.10 -2.05 5.89 -2.38 -0.01 -2.06 16 40 H 0.14 -4.39 8.14 -2.39 -0.02 -4.41 16 41 H 0.14 -3.98 8.14 -2.39 -0.02 -4.00 16 Total: 0.00 -42.93 336.38 6.92 -36.01 By element: Atomic # 1 Polarization: -43.31 SS G_CDS: 1.02 Total: -42.29 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 6.09 Total: 5.52 kcal Atomic # 7 Polarization: -15.26 SS G_CDS: -1.62 Total: -16.88 kcal Atomic # 8 Polarization: -1.20 SS G_CDS: -0.52 Total: -1.72 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: 2.03 Total: 19.80 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -0.08 Total: -0.44 kcal Total: -42.93 6.92 -36.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229430299.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.808 kcal (2) G-P(sol) polarization free energy of solvation -42.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds