Wall clock time and date at job start Tue Mar 31 2020 07:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35512 * 116.99937 * 2 1 4 4 C 1.39477 * 120.47264 * 179.97438 * 3 2 1 5 5 C 1.38258 * 118.51024 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.36922 * 179.97438 * 5 4 3 7 7 N 1.32416 * 119.26698 * 359.73255 * 5 4 3 8 8 C 1.32504 * 120.88685 * 0.53787 * 7 5 4 9 9 N 1.38435 * 119.18795 * 179.71842 * 8 7 5 10 10 C 1.36994 * 119.99594 * 1.49605 * 9 8 7 11 11 H 1.08002 * 119.99878 * 42.46953 * 10 9 8 12 12 C 1.38826 * 120.00116 * 222.19061 * 10 9 8 13 13 N 1.31540 * 120.00318 * 209.56931 * 12 10 9 14 14 Si 1.86798 * 119.99807 * 29.56936 * 12 10 9 15 15 H 1.48497 * 109.47590 * 55.00261 * 14 12 10 16 16 H 1.48503 * 109.47235 * 175.00519 * 14 12 10 17 17 H 1.48508 * 109.47047 * 295.00072 * 14 12 10 18 18 C 1.46493 * 120.00378 * 181.49965 * 9 8 7 19 19 C 1.50712 * 109.46796 * 275.49928 * 18 9 8 20 20 C 1.38230 * 119.99465 * 269.72578 * 19 18 9 21 21 C 1.38244 * 119.99575 * 179.77016 * 20 19 18 22 22 C 1.38230 * 119.99763 * 0.50128 * 21 20 19 23 23 C 1.38230 * 120.00115 * 359.75164 * 22 21 20 24 24 C 1.38230 * 120.00007 * 89.99725 * 19 18 9 25 25 N 1.32529 * 121.62905 * 359.45121 * 8 7 5 26 26 H 1.08990 * 109.47468 * 59.99982 * 1 2 3 27 27 H 1.09002 * 109.46865 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47207 * 299.99435 * 1 2 3 29 29 H 1.08003 * 120.74436 * 0.03855 * 4 3 2 30 30 H 1.09003 * 109.47214 * 94.75345 * 6 5 4 31 31 H 1.08997 * 109.47641 * 214.75766 * 6 5 4 32 32 H 1.09012 * 109.46984 * 334.76038 * 6 5 4 33 33 H 0.96997 * 120.00324 * 180.02562 * 13 12 10 34 34 H 1.09001 * 109.47271 * 35.49029 * 18 9 8 35 35 H 1.08990 * 109.47476 * 155.49986 * 18 9 8 36 36 H 1.08002 * 120.00512 * 359.97438 * 20 19 18 37 37 H 1.08000 * 119.99808 * 180.22733 * 21 20 19 38 38 H 1.08005 * 119.99881 * 179.72692 * 22 21 20 39 39 H 1.08004 * 120.00314 * 179.97438 * 23 22 21 40 40 H 1.08006 * 120.00297 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4364 1.2919 0.0005 5 6 4.0215 2.5446 0.0011 6 6 5.5220 2.6846 0.0022 7 7 3.2489 3.6200 -0.0044 8 6 1.9285 3.5089 0.0004 9 7 1.1545 4.6567 0.0004 10 6 1.7548 5.8876 -0.0354 11 1 2.5955 6.0594 -0.6913 12 6 1.2788 6.9156 0.7669 13 7 1.4011 8.1656 0.3759 14 14 0.4647 6.5239 2.4019 15 1 1.3837 5.7001 3.2277 16 1 0.1560 7.7884 3.1168 17 1 -0.7929 5.7718 2.1610 18 6 -0.3064 4.5550 0.0389 19 6 -0.8333 4.3604 -1.3596 20 6 -1.1663 5.4576 -2.1316 21 6 -1.6452 5.2793 -3.4161 22 6 -1.8008 4.0034 -3.9247 23 6 -1.4726 2.9060 -3.1508 24 6 -0.9889 3.0845 -1.8683 25 7 1.3305 2.3262 0.0000 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 4.0438 0.3988 0.0003 30 1 5.8767 2.8033 -1.0216 31 1 5.8049 3.5590 0.5883 32 1 5.9698 1.7927 0.4408 33 1 1.0688 8.8839 0.9367 34 1 -0.5953 3.7053 0.6575 35 1 -0.7233 5.4697 0.4602 36 1 -1.0493 6.4543 -1.7324 37 1 -1.9020 6.1366 -4.0205 38 1 -2.1790 3.8639 -4.9267 39 1 -1.5945 1.9091 -3.5481 40 1 -0.7332 2.2270 -1.2633 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166992247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:31 Heat of formation + Delta-G solvation = 62.809639 kcal Electronic energy + Delta-G solvation = -24591.242636 eV Core-core repulsion = 21179.499874 eV Total energy + Delta-G solvation = -3411.742763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.31423 -38.82310 -37.99573 -36.16270 -33.13721 -32.22007 -31.52008 -30.42936 -29.94487 -28.29459 -26.49588 -25.96540 -24.80640 -22.04990 -21.95829 -21.46627 -20.45929 -18.18568 -17.10703 -16.86756 -16.15462 -15.69831 -15.58754 -15.03418 -14.77199 -14.47805 -14.39045 -14.02704 -14.00748 -13.22937 -13.01578 -12.89852 -12.67763 -12.59419 -12.35140 -12.06119 -11.85163 -11.67401 -11.53021 -11.34394 -10.93658 -10.85293 -10.53582 -10.27644 -10.07548 -9.89406 -9.38034 -9.06019 -8.62230 -8.42875 -8.34750 -8.18352 -7.14940 -6.58042 -4.00550 1.77487 1.89589 2.04663 2.18970 3.04166 3.17896 3.26609 3.43971 3.88271 4.09686 4.38996 4.59912 4.92601 4.96136 5.28516 5.32574 5.40434 5.42532 5.46769 5.49572 5.62240 5.69701 5.80021 5.87206 5.96584 5.99772 6.05378 6.07794 6.15140 6.21808 6.33943 6.47449 6.50513 6.57346 6.91921 6.95566 6.97774 7.23247 7.32902 7.49632 7.64732 7.88636 8.27317 8.41808 8.93570 9.19326 9.61292 10.52130 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.009779 B = 0.008370 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.612177 B = 3344.494006 C = 5027.651735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.311 6.311 3 C 0.394 3.606 4 C -0.352 4.352 5 C 0.234 3.766 6 C -0.097 4.097 7 N -0.565 5.565 8 C 0.558 3.442 9 N -0.413 5.413 10 C -0.298 4.298 11 H 0.108 0.892 12 C 0.071 3.929 13 N -0.843 5.843 14 Si 0.857 3.143 15 H -0.268 1.268 16 H -0.283 1.283 17 H -0.262 1.262 18 C 0.153 3.847 19 C -0.086 4.086 20 C -0.090 4.090 21 C -0.130 4.130 22 C -0.128 4.128 23 C -0.136 4.136 24 C -0.102 4.102 25 N -0.642 5.642 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.128 0.872 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.277 0.723 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.525 -10.386 -2.585 11.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.216 6.216 3 C 0.204 3.796 4 C -0.382 4.382 5 C 0.083 3.917 6 C -0.154 4.154 7 N -0.292 5.292 8 C 0.206 3.794 9 N -0.110 5.110 10 C -0.426 4.426 11 H 0.125 0.875 12 C -0.138 4.138 13 N -0.476 5.476 14 Si 0.682 3.318 15 H -0.193 1.193 16 H -0.209 1.209 17 H -0.188 1.188 18 C 0.030 3.970 19 C -0.087 4.087 20 C -0.108 4.108 21 C -0.148 4.148 22 C -0.146 4.146 23 C -0.155 4.155 24 C -0.120 4.120 25 N -0.384 5.384 26 H 0.076 0.924 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.146 0.854 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.206 -9.322 -2.537 10.537 hybrid contribution -0.131 -0.762 0.804 1.115 sum -4.338 -10.084 -1.733 11.113 Atomic orbital electron populations 1.22855 0.78244 1.02137 1.02441 1.86180 1.22191 1.25394 1.87881 1.19611 0.89006 0.83831 0.87147 1.20898 0.92022 0.99300 1.25948 1.21050 0.96238 0.87192 0.87265 1.20631 0.88868 1.02928 1.02978 1.67854 1.04260 1.32095 1.24967 1.19221 0.85375 0.84611 0.90153 1.42269 1.02002 1.01875 1.64844 1.18920 1.17757 0.82448 1.23468 0.87457 1.25370 0.96277 0.94653 0.97468 1.69887 1.42284 0.99389 1.36037 0.87439 0.80299 0.78351 0.85676 1.19341 1.20914 1.18803 1.20838 0.81096 1.02432 0.92666 1.20321 0.97725 0.93110 0.97570 1.21207 0.96599 0.99171 0.93856 1.21072 1.00996 0.96810 0.95898 1.21017 1.01332 0.92988 0.99264 1.21036 1.01313 0.98195 0.94914 1.21362 0.97632 0.97495 0.95556 1.67368 1.40770 0.97969 1.32287 0.92374 0.89259 0.92468 0.85400 0.90464 0.90296 0.91059 0.91275 0.90802 0.89329 0.85545 0.86602 0.86967 0.87009 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.34 101.05 1.04 1.56 16 2 O -0.31 -5.23 10.49 -18.23 -0.19 -5.42 16 3 C 0.39 7.67 7.53 -16.71 -0.13 7.54 16 4 C -0.35 -6.50 9.78 -39.11 -0.38 -6.88 16 5 C 0.23 4.55 6.82 -82.33 -0.56 3.99 16 6 C -0.10 -1.41 10.23 36.01 0.37 -1.04 16 7 N -0.57 -13.31 9.43 -10.19 -0.10 -13.40 16 8 C 0.56 13.27 8.10 -322.71 -2.61 10.65 16 9 N -0.41 -10.01 2.14 -118.34 -0.25 -10.27 16 10 C -0.30 -7.95 9.13 -15.03 -0.14 -8.09 16 11 H 0.11 3.20 7.98 -52.49 -0.42 2.78 16 12 C 0.07 1.86 5.05 -17.46 -0.09 1.77 16 13 N -0.84 -22.76 13.96 55.49 0.77 -21.99 16 14 Si 0.86 19.88 26.61 -169.99 -4.52 15.36 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 17 H -0.26 -5.66 5.71 56.52 0.32 -5.34 16 18 C 0.15 3.29 4.06 -5.19 -0.02 3.27 16 19 C -0.09 -1.70 5.43 -104.62 -0.57 -2.27 16 20 C -0.09 -1.71 9.70 -39.58 -0.38 -2.10 16 21 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 22 C -0.13 -1.94 10.05 -39.59 -0.40 -2.34 16 23 C -0.14 -2.16 10.05 -39.59 -0.40 -2.56 16 24 C -0.10 -1.83 9.25 -39.59 -0.37 -2.20 16 25 N -0.64 -13.59 6.48 -13.96 -0.09 -13.68 16 26 H 0.06 0.79 5.87 -51.93 -0.30 0.49 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.79 8.12 -51.93 -0.42 0.36 16 29 H 0.13 2.00 8.06 -52.48 -0.42 1.58 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 0.83 8.06 -51.92 -0.42 0.41 16 33 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.07 1.52 7.49 -51.93 -0.39 1.13 16 35 H 0.09 1.94 4.36 -51.93 -0.23 1.72 16 36 H 0.13 2.51 8.06 -52.49 -0.42 2.09 16 37 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 38 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 39 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 40 H 0.13 2.26 4.48 -52.48 -0.24 2.03 16 LS Contribution 334.00 15.07 5.03 5.03 Total: -1.00 -29.49 334.00 -9.38 -38.88 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.01 Total: 6.70 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -5.03 Total: -1.21 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.34 Total: -59.34 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.19 Total: -5.42 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.52 Total: 15.36 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.49 -9.38 -38.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166992247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.687 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds