Wall clock time and date at job start Tue Mar 31 2020 09:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47385 * 2 1 4 4 C 1.50704 * 109.46960 * 120.00270 * 2 1 3 5 5 H 1.07993 * 120.00284 * 119.99789 * 4 2 1 6 6 C 1.37876 * 119.99653 * 300.00051 * 4 2 1 7 7 N 1.31514 * 120.00450 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00077 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.46821 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47550 * 119.99381 * 8 6 4 11 11 H 1.48499 * 109.47156 * 240.00026 * 8 6 4 12 12 N 1.46894 * 109.46821 * 239.99799 * 2 1 3 13 13 C 1.46903 * 110.99829 * 159.47453 * 12 2 1 14 14 H 1.08999 * 110.53652 * 40.67994 * 13 12 2 15 15 C 1.54628 * 110.48736 * 163.28629 * 13 12 2 16 16 C 1.54665 * 101.68203 * 93.67051 * 15 13 12 17 17 N 1.46767 * 105.38238 * 25.76318 * 16 15 13 18 18 C 1.39544 * 124.34629 * 162.85501 * 17 16 15 19 19 C 1.39107 * 119.92073 * 354.05222 * 18 17 16 20 20 C 1.37700 * 120.07769 * 180.22919 * 19 18 17 21 21 C 1.39775 * 119.91709 * 359.50353 * 20 19 18 22 22 C 1.43199 * 120.07320 * 180.23122 * 21 20 19 23 23 N 9.66890 * 115.54022 * 110.03123 * 3 1 2 24 24 C 1.39765 * 119.84401 * 0.24620 * 21 20 19 25 25 C 1.37700 * 119.92099 * 0.02562 * 24 21 20 26 26 C 1.34420 * 111.29969 * 342.59168 * 17 16 15 27 27 O 1.21278 * 124.93555 * 180.64822 * 26 17 16 28 28 H 1.09002 * 109.47004 * 55.16906 * 1 2 3 29 29 H 1.08994 * 109.47839 * 175.16923 * 1 2 3 30 30 H 1.09009 * 109.47192 * 295.17512 * 1 2 3 31 31 H 0.96997 * 120.00795 * 180.02562 * 7 6 4 32 32 H 1.00900 * 111.00512 * 283.42575 * 12 2 1 33 33 H 1.08998 * 110.97291 * 211.99683 * 15 13 12 34 34 H 1.08994 * 110.97116 * 335.73024 * 15 13 12 35 35 H 1.09004 * 110.39494 * 266.74000 * 16 15 13 36 36 H 1.08991 * 110.18521 * 144.68230 * 16 15 13 37 37 H 1.07997 * 119.95920 * 359.97438 * 19 18 17 38 38 H 1.07998 * 120.03988 * 179.77215 * 20 19 18 39 39 H 1.07993 * 120.04320 * 180.02562 * 24 21 20 40 40 H 1.07993 * 119.96560 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.1472 -2.2864 3.6038 10 1 3.1471 -0.1859 4.8162 11 1 1.1675 -1.5866 4.8165 12 7 2.0196 -0.6925 -1.1994 13 6 3.4060 -0.3102 -1.4989 14 1 3.9909 -0.2432 -0.5816 15 6 4.0472 -1.3220 -2.4768 16 6 3.7788 -0.6497 -3.8436 17 7 3.6618 0.7847 -3.5556 18 6 3.7593 1.7912 -4.5171 19 6 4.1043 1.4696 -5.8258 20 6 4.2061 2.4609 -6.7762 21 6 3.9522 3.7903 -6.4268 22 6 4.0522 4.8232 -7.4136 23 7 4.1317 5.6426 -8.1963 24 6 3.6008 4.1090 -5.1122 25 6 3.5063 3.1132 -4.1658 26 6 3.4429 1.0038 -2.2476 27 8 3.2967 2.0961 -1.7413 28 1 -0.3633 0.5870 -0.8436 29 1 -0.3634 -1.0239 -0.0865 30 1 -0.3634 0.4372 0.9301 31 1 0.7094 1.1618 3.4844 32 1 1.9339 -1.6929 -1.0997 33 1 5.1164 -1.4214 -2.2898 34 1 3.5510 -2.2906 -2.4167 35 1 2.8510 -1.0246 -4.2757 36 1 4.6122 -0.8314 -4.5221 37 1 4.2965 0.4418 -6.0958 38 1 4.4775 2.2110 -7.7912 39 1 3.4035 5.1350 -4.8389 40 1 3.2345 3.3586 -3.1499 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870451.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:58 Heat of formation + Delta-G solvation = 32.845628 kcal Electronic energy + Delta-G solvation = -23434.192660 eV Core-core repulsion = 20021.150560 eV Total energy + Delta-G solvation = -3413.042100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.09929 -39.04135 -36.66257 -36.50888 -35.59004 -33.23055 -31.60300 -31.28354 -29.50990 -28.25063 -25.93592 -25.11827 -24.06918 -23.14315 -21.26090 -20.29536 -19.66716 -19.02903 -17.59399 -16.64108 -16.47300 -15.76098 -15.06957 -14.84521 -14.55809 -14.34328 -14.31646 -14.08917 -13.74871 -13.61836 -13.45516 -13.20237 -12.84657 -12.70346 -12.49981 -12.36598 -12.14311 -11.76138 -11.60259 -11.34293 -11.18197 -11.03441 -10.85422 -10.28651 -10.25841 -10.18092 -9.93739 -9.38964 -9.24090 -9.22577 -8.43943 -8.00834 -7.58542 -6.05035 -4.18774 0.62541 1.18661 2.54821 2.56164 2.75681 3.06219 3.22601 3.31348 3.32379 3.78848 3.82004 4.34121 4.34651 4.46306 4.66472 4.78528 4.82909 4.92243 5.04958 5.22193 5.28396 5.32330 5.42219 5.50508 5.75692 5.84108 5.87833 5.91714 6.02534 6.15819 6.21723 6.35924 6.83072 6.89809 7.03462 7.07986 7.15517 7.38392 7.42235 7.66322 7.86214 8.05834 8.15743 8.26199 8.45874 8.90695 9.49338 10.96540 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.026659 B = 0.003284 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.052801 B = 8524.182244 C = 9049.182473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.202 3.798 3 H 0.048 0.952 4 C -0.550 4.550 5 H 0.054 0.946 6 C 0.069 3.931 7 N -0.881 5.881 8 Si 0.890 3.110 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.671 5.671 13 C 0.063 3.937 14 H 0.091 0.909 15 C -0.134 4.134 16 C 0.104 3.896 17 N -0.561 5.561 18 C 0.215 3.785 19 C -0.171 4.171 20 C -0.038 4.038 21 C -0.077 4.077 22 C 0.265 3.735 23 N -0.436 5.436 24 C -0.035 4.035 25 C -0.166 4.166 26 C 0.536 3.464 27 O -0.490 6.490 28 H 0.012 0.988 29 H 0.023 0.977 30 H 0.085 0.915 31 H 0.262 0.738 32 H 0.339 0.661 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.056 -3.832 -15.058 17.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.094 3.906 3 H 0.066 0.934 4 C -0.589 4.589 5 H 0.073 0.927 6 C -0.135 4.135 7 N -0.518 5.518 8 Si 0.718 3.282 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.305 5.305 13 C -0.051 4.051 14 H 0.108 0.892 15 C -0.172 4.172 16 C -0.018 4.018 17 N -0.283 5.283 18 C 0.117 3.883 19 C -0.192 4.192 20 C -0.059 4.059 21 C -0.082 4.082 22 C -0.050 4.050 23 N -0.112 5.112 24 C -0.056 4.056 25 C -0.186 4.186 26 C 0.324 3.676 27 O -0.361 6.361 28 H 0.031 0.969 29 H 0.042 0.958 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.158 0.842 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.728 -1.414 -16.212 17.609 hybrid contribution 0.706 -1.316 1.895 2.413 sum 7.434 -2.731 -14.316 16.361 Atomic orbital electron populations 1.21677 0.97536 0.98303 1.00845 1.19337 0.92515 0.95052 0.83672 0.93361 1.21793 1.32347 1.12890 0.91880 0.92745 1.24927 0.94767 0.94776 0.98996 1.69889 1.35993 1.22458 1.23491 0.86591 0.78699 0.79632 0.83327 1.19923 1.20981 1.20946 1.60894 1.14339 1.12387 1.42861 1.22011 0.94438 0.91082 0.97553 0.89159 1.22847 1.01825 0.99452 0.93093 1.22250 1.02689 0.78179 0.98658 1.45999 1.67706 1.06957 1.07630 1.18127 0.93495 0.88194 0.88480 1.20660 1.06965 1.00232 0.91349 1.20847 0.95512 0.90262 0.99301 1.15953 1.11808 0.89658 0.90802 1.25735 0.93116 0.93074 0.93038 1.81236 1.10028 1.09877 1.10033 1.21058 0.94333 0.99895 0.90292 1.21700 1.03443 0.90470 1.03002 1.21377 0.73396 0.91759 0.81026 1.90602 1.46104 1.27972 1.71395 0.96896 0.95783 0.89609 0.92811 0.84193 0.89713 0.88415 0.89664 0.90033 0.84688 0.84883 0.84750 0.81595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.36 37.16 0.35 -2.65 16 2 C 0.20 4.82 2.46 -68.87 -0.17 4.65 16 3 H 0.05 1.34 6.90 -51.93 -0.36 0.98 16 4 C -0.55 -14.08 8.07 -34.44 -0.28 -14.36 16 5 H 0.05 1.35 7.80 -52.49 -0.41 0.94 16 6 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 7 N -0.88 -24.67 11.29 55.43 0.63 -24.05 16 8 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.67 -12.53 6.05 -100.97 -0.61 -13.14 16 13 C 0.06 1.02 3.06 -67.72 -0.21 0.81 16 14 H 0.09 1.68 7.60 -51.93 -0.39 1.28 16 15 C -0.13 -1.38 6.86 -25.00 -0.17 -1.55 16 16 C 0.10 0.96 6.51 -3.02 -0.02 0.94 16 17 N -0.56 -7.33 3.13 -112.14 -0.35 -7.68 16 18 C 0.21 2.62 6.60 -83.70 -0.55 2.07 16 19 C -0.17 -1.53 9.39 -39.46 -0.37 -1.90 16 20 C -0.04 -0.32 9.75 -39.20 -0.38 -0.70 16 21 C -0.08 -0.78 5.74 -106.83 -0.61 -1.40 16 22 C 0.26 3.04 15.33 -22.47 -0.34 2.69 16 23 N -0.44 -5.91 18.54 41.84 0.78 -5.14 16 24 C -0.03 -0.38 9.75 -39.21 -0.38 -0.76 16 25 C -0.17 -2.18 9.26 -39.46 -0.37 -2.55 16 26 C 0.54 9.21 7.31 -10.86 -0.08 9.14 16 27 O -0.49 -10.22 13.93 5.56 0.08 -10.14 16 28 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 2.27 5.96 -51.92 -0.31 1.96 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.34 5.82 8.03 -39.29 -0.32 5.51 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.86 7.68 -51.93 -0.40 0.47 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.51 7.21 -51.93 -0.37 0.13 16 37 H 0.14 0.86 6.71 -52.49 -0.35 0.51 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.17 2.64 5.22 -52.49 -0.27 2.36 16 LS Contribution 338.62 15.07 5.10 5.10 Total: -1.00 -30.95 338.62 -7.94 -38.89 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.86 Total: 4.55 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -3.68 Total: -3.82 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.44 Total: -50.01 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.95 -7.94 -38.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870451.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.738 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds