Wall clock time and date at job start Tue Mar 31 2020 09:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47385 * 2 1 4 4 C 1.50704 * 109.46960 * 120.00270 * 2 1 3 5 5 H 1.07993 * 120.00284 * 119.99789 * 4 2 1 6 6 C 1.37876 * 119.99653 * 300.00051 * 4 2 1 7 7 N 1.31514 * 120.00450 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00077 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.46821 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47550 * 119.99381 * 8 6 4 11 11 H 1.48499 * 109.47156 * 240.00026 * 8 6 4 12 12 N 1.46894 * 109.46821 * 239.99799 * 2 1 3 13 13 C 1.46903 * 110.99829 * 159.47453 * 12 2 1 14 14 H 1.08999 * 110.53652 * 40.67994 * 13 12 2 15 15 C 1.54628 * 110.48736 * 163.28629 * 13 12 2 16 16 C 1.54665 * 101.68203 * 93.67051 * 15 13 12 17 17 N 1.46767 * 105.38238 * 25.76318 * 16 15 13 18 18 C 1.39544 * 124.34629 * 162.85501 * 17 16 15 19 19 C 1.39107 * 119.92073 * 354.05222 * 18 17 16 20 20 C 1.37700 * 120.07769 * 180.22919 * 19 18 17 21 21 C 1.39775 * 119.91709 * 359.50353 * 20 19 18 22 22 C 1.43199 * 120.07320 * 180.23122 * 21 20 19 23 23 N 9.66890 * 115.54022 * 110.03123 * 3 1 2 24 24 C 1.39765 * 119.84401 * 0.24620 * 21 20 19 25 25 C 1.37700 * 119.92099 * 0.02562 * 24 21 20 26 26 C 1.34420 * 111.29969 * 342.59168 * 17 16 15 27 27 O 1.21278 * 124.93555 * 180.64822 * 26 17 16 28 28 H 1.09002 * 109.47004 * 55.16906 * 1 2 3 29 29 H 1.08994 * 109.47839 * 175.16923 * 1 2 3 30 30 H 1.09009 * 109.47192 * 295.17512 * 1 2 3 31 31 H 0.96997 * 120.00795 * 180.02562 * 7 6 4 32 32 H 1.00900 * 111.00512 * 283.42575 * 12 2 1 33 33 H 1.08998 * 110.97291 * 211.99683 * 15 13 12 34 34 H 1.08994 * 110.97116 * 335.73024 * 15 13 12 35 35 H 1.09004 * 110.39494 * 266.74000 * 16 15 13 36 36 H 1.08991 * 110.18521 * 144.68230 * 16 15 13 37 37 H 1.07997 * 119.95920 * 359.97438 * 19 18 17 38 38 H 1.07998 * 120.03988 * 179.77215 * 20 19 18 39 39 H 1.07993 * 120.04320 * 180.02562 * 24 21 20 40 40 H 1.07993 * 119.96560 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.1472 -2.2864 3.6038 10 1 3.1471 -0.1859 4.8162 11 1 1.1675 -1.5866 4.8165 12 7 2.0196 -0.6925 -1.1994 13 6 3.4060 -0.3102 -1.4989 14 1 3.9909 -0.2432 -0.5816 15 6 4.0472 -1.3220 -2.4768 16 6 3.7788 -0.6497 -3.8436 17 7 3.6618 0.7847 -3.5556 18 6 3.7593 1.7912 -4.5171 19 6 4.1043 1.4696 -5.8258 20 6 4.2061 2.4609 -6.7762 21 6 3.9522 3.7903 -6.4268 22 6 4.0522 4.8232 -7.4136 23 7 4.1317 5.6426 -8.1963 24 6 3.6008 4.1090 -5.1122 25 6 3.5063 3.1132 -4.1658 26 6 3.4429 1.0038 -2.2476 27 8 3.2967 2.0961 -1.7413 28 1 -0.3633 0.5870 -0.8436 29 1 -0.3634 -1.0239 -0.0865 30 1 -0.3634 0.4372 0.9301 31 1 0.7094 1.1618 3.4844 32 1 1.9339 -1.6929 -1.0997 33 1 5.1164 -1.4214 -2.2898 34 1 3.5510 -2.2906 -2.4167 35 1 2.8510 -1.0246 -4.2757 36 1 4.6122 -0.8314 -4.5221 37 1 4.2965 0.4418 -6.0958 38 1 4.4775 2.2110 -7.7912 39 1 3.4035 5.1350 -4.8389 40 1 3.2345 3.3586 -3.1499 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870451.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:55 Heat of formation + Delta-G solvation = 12.774795 kcal Electronic energy + Delta-G solvation = -23435.062997 eV Core-core repulsion = 20021.150560 eV Total energy + Delta-G solvation = -3413.912436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.16740 -39.99488 -37.88544 -37.72968 -36.97660 -34.74032 -33.08197 -32.11380 -30.73845 -29.50378 -27.26679 -27.12238 -24.97695 -24.05669 -22.33908 -21.98997 -20.81676 -19.90805 -18.71864 -18.50571 -17.63085 -16.79368 -16.73221 -15.99045 -15.75652 -15.49036 -15.39702 -15.13741 -14.96122 -14.65679 -14.58627 -14.35272 -14.16838 -13.85504 -13.77525 -13.52276 -13.33061 -13.07983 -12.98713 -12.86086 -12.62374 -12.39184 -12.21267 -12.16243 -11.98003 -11.61178 -11.19201 -11.08645 -10.69826 -10.47364 -10.04475 -9.23639 -8.94669 -8.06223 -6.28491 -0.27587 0.38573 1.38484 1.39974 1.41938 1.51991 1.63815 1.79788 2.06009 2.41077 2.91951 2.93082 3.16806 3.33023 3.50514 3.73176 3.91728 3.95975 4.04930 4.22010 4.36905 4.47511 4.60687 4.69958 4.76228 4.86908 5.00494 5.05993 5.09586 5.10411 5.15492 5.19738 5.24619 5.36724 5.48421 5.50763 5.66879 5.92445 6.02464 6.05953 6.11078 6.25980 6.47516 6.76663 6.97453 7.04843 7.43862 8.93258 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.026659 B = 0.003284 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.052801 B = 8524.182244 C = 9049.182473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.210 3.790 3 H -0.001 1.001 4 C -0.553 4.553 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.956 3.044 9 H -0.260 1.260 10 H -0.288 1.288 11 H -0.281 1.281 12 N -0.661 5.661 13 C 0.054 3.946 14 H 0.057 0.943 15 C -0.118 4.118 16 C 0.099 3.901 17 N -0.554 5.554 18 C 0.193 3.807 19 C -0.149 4.149 20 C -0.022 4.022 21 C -0.076 4.076 22 C 0.287 3.713 23 N -0.473 5.473 24 C -0.035 4.035 25 C -0.192 4.192 26 C 0.522 3.478 27 O -0.546 6.546 28 H 0.015 0.985 29 H 0.038 0.962 30 H 0.056 0.944 31 H 0.260 0.740 32 H 0.351 0.649 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.176 0.824 38 H 0.171 0.829 39 H 0.139 0.861 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.608 -7.058 -17.830 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.101 3.899 3 H 0.017 0.983 4 C -0.592 4.592 5 H 0.082 0.918 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.782 3.218 9 H -0.183 1.183 10 H -0.215 1.215 11 H -0.207 1.207 12 N -0.295 5.295 13 C -0.060 4.060 14 H 0.075 0.925 15 C -0.156 4.156 16 C -0.021 4.021 17 N -0.275 5.275 18 C 0.096 3.904 19 C -0.169 4.169 20 C -0.043 4.043 21 C -0.081 4.081 22 C -0.027 4.027 23 N -0.149 5.149 24 C -0.056 4.056 25 C -0.213 4.213 26 C 0.311 3.689 27 O -0.422 6.422 28 H 0.034 0.966 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.171 0.829 33 H 0.125 0.875 34 H 0.138 0.862 35 H 0.117 0.883 36 H 0.146 0.854 37 H 0.194 0.806 38 H 0.188 0.812 39 H 0.156 0.844 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.298 -4.690 -19.047 21.299 hybrid contribution 0.246 -0.260 2.665 2.689 sum 8.544 -4.949 -16.382 19.127 Atomic orbital electron populations 1.21520 0.97705 0.98846 0.99384 1.18981 0.92396 0.92975 0.85542 0.98272 1.22143 1.31724 1.12856 0.92495 0.91792 1.25781 0.95136 0.95519 1.02255 1.70053 1.37523 1.24124 1.23933 0.85546 0.78126 0.78688 0.79474 1.18347 1.21482 1.20685 1.60661 1.16410 1.12643 1.39804 1.22079 0.92734 0.93185 0.97999 0.92491 1.22895 1.02756 0.98515 0.91415 1.22659 1.05357 0.75326 0.98724 1.45985 1.66396 1.08906 1.06216 1.18379 0.94792 0.87426 0.89762 1.21011 1.04529 1.02250 0.89146 1.21268 0.93271 0.88885 1.00853 1.16003 1.11886 0.90418 0.89763 1.25788 0.91992 0.92509 0.92398 1.81267 1.11411 1.10813 1.11419 1.21037 0.94286 0.99763 0.90547 1.21468 1.05663 0.92286 1.01880 1.21621 0.73246 0.91196 0.82840 1.90584 1.48794 1.29879 1.72965 0.96608 0.94279 0.92538 0.93050 0.82905 0.87485 0.86192 0.88275 0.85391 0.80633 0.81179 0.84350 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 9.36 71.98 0.67 -5.06 16 2 C 0.21 10.45 2.46 44.17 0.11 10.56 16 3 H 0.00 -0.04 6.90 -2.39 -0.02 -0.06 16 4 C -0.55 -28.85 8.07 25.60 0.21 -28.65 16 5 H 0.06 3.14 7.80 -2.91 -0.02 3.11 16 6 C 0.01 0.69 5.29 84.65 0.45 1.14 16 7 N -0.92 -53.65 11.29 21.45 0.24 -53.41 16 8 Si 0.96 42.53 29.54 68.60 2.03 44.55 16 9 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.66 -24.76 6.05 -473.35 -2.86 -27.62 16 13 C 0.05 1.76 3.06 44.91 0.14 1.89 16 14 H 0.06 2.22 7.60 -2.39 -0.02 2.20 16 15 C -0.12 -2.02 6.86 31.72 0.22 -1.80 16 16 C 0.10 1.39 6.51 86.90 0.57 1.95 16 17 N -0.55 -13.65 3.13 -627.28 -1.96 -15.61 16 18 C 0.19 4.41 6.60 38.33 0.25 4.66 16 19 C -0.15 -1.98 9.39 22.35 0.21 -1.77 16 20 C -0.02 -0.27 9.75 22.51 0.22 -0.05 16 21 C -0.08 -1.37 5.74 -21.29 -0.12 -1.49 16 22 C 0.29 6.07 15.33 88.33 1.35 7.43 16 23 N -0.47 -12.26 18.54 19.00 0.35 -11.91 16 24 C -0.04 -0.77 9.75 22.51 0.22 -0.55 16 25 C -0.19 -5.28 9.26 22.35 0.21 -5.07 16 26 C 0.52 18.64 7.31 87.90 0.64 19.28 16 27 O -0.55 -25.06 13.93 -3.02 -0.04 -25.10 16 28 H 0.01 0.71 8.14 -2.39 -0.02 0.70 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 3.13 5.96 -2.38 -0.01 3.11 16 31 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.35 11.54 8.03 -89.69 -0.72 10.82 16 33 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.12 1.57 7.68 -2.39 -0.02 1.55 16 35 H 0.10 1.19 8.14 -2.38 -0.02 1.18 16 36 H 0.13 0.69 7.21 -2.39 -0.02 0.67 16 37 H 0.18 0.94 6.71 -2.91 -0.02 0.92 16 38 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 39 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.13 4.60 5.22 -2.91 -0.02 4.58 16 Total: -1.00 -74.74 338.62 3.46 -71.28 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.36 Total: 15.36 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 5.34 Total: 2.46 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -4.23 Total: -108.55 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.04 Total: -25.10 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -74.74 3.46 -71.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870451.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.056 kcal (2) G-P(sol) polarization free energy of solvation -74.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds