Wall clock time and date at job start Tue Mar 31 2020 07:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 119.99866 * 2 1 4 4 O 1.21600 * 119.99960 * 185.52586 * 3 2 1 5 5 C 1.47511 * 120.00059 * 5.53186 * 3 2 1 6 6 C 1.39340 * 120.20556 * 42.60162 * 5 3 2 7 7 C 1.38326 * 120.49801 * 180.02562 * 6 5 3 8 8 C 1.37905 * 120.58666 * 359.95869 * 7 6 5 9 9 C 1.39535 * 119.99354 * 0.02562 * 8 7 6 10 10 C 1.46572 * 133.95576 * 179.97438 * 9 8 7 11 11 C 1.34210 * 106.89500 * 180.02562 * 10 9 8 12 12 N 1.36910 * 109.87913 * 0.02562 * 11 10 9 13 13 H 0.97005 * 125.01077 * 180.02562 * 12 11 10 14 14 C 1.37121 * 109.97342 * 359.76092 * 12 11 10 15 15 C 1.46500 * 120.00022 * 180.02562 * 2 1 3 16 16 C 1.53497 * 114.20864 * 59.99940 * 15 2 1 17 17 N 1.47061 * 87.98624 * 220.14640 * 16 15 2 18 18 C 1.36933 * 136.06077 * 207.08709 * 17 16 15 19 19 H 1.08004 * 119.99738 * 353.35475 * 18 17 16 20 20 C 1.38806 * 120.00483 * 173.36481 * 18 17 16 21 21 N 1.31619 * 120.00145 * 178.17399 * 20 18 17 22 22 Si 1.86805 * 119.99825 * 358.17204 * 20 18 17 23 23 H 1.48503 * 109.47315 * 174.20119 * 22 20 18 24 24 H 1.48503 * 109.46797 * 294.19694 * 22 20 18 25 25 H 1.48495 * 109.47302 * 54.19793 * 22 20 18 26 26 C 1.47074 * 87.88658 * 27.33925 * 17 16 15 27 27 H 1.09004 * 109.47147 * 275.07858 * 1 2 3 28 28 H 1.08997 * 109.47304 * 35.08203 * 1 2 3 29 29 H 1.09004 * 109.47236 * 155.08440 * 1 2 3 30 30 H 1.07998 * 119.75522 * 0.02562 * 6 5 3 31 31 H 1.08003 * 119.70533 * 179.97438 * 7 6 5 32 32 H 1.07998 * 120.00436 * 179.97438 * 8 7 6 33 33 H 1.07997 * 126.55117 * 0.02773 * 10 9 8 34 34 H 1.07999 * 125.06400 * 179.97438 * 11 10 9 35 35 H 1.09002 * 113.27701 * 193.06260 * 15 2 1 36 36 H 1.08998 * 113.46787 * 105.36490 * 16 15 2 37 37 H 1.09002 * 113.46275 * 334.92872 * 16 15 2 38 38 H 0.96998 * 120.00155 * 5.04514 * 21 20 18 39 39 H 1.09000 * 113.46426 * 87.43185 * 26 17 16 40 40 H 1.08994 * 113.47292 * 217.87670 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3506 1.1697 -0.1014 5 6 1.4064 2.4417 0.1231 6 6 0.3605 2.5639 1.0357 7 6 -0.3307 3.7560 1.1558 8 6 0.0039 4.8428 0.3757 9 6 1.0476 4.7455 -0.5452 10 6 1.6484 5.6771 -1.5042 11 6 2.6348 5.0135 -2.1271 12 7 2.7124 3.7346 -1.6446 13 1 3.3489 3.0654 -1.9415 14 6 1.7618 3.5410 -0.6756 15 6 2.1974 -1.2687 -0.0006 16 6 1.9059 -2.1633 -1.2134 17 7 1.9169 -3.3161 -0.3003 18 6 2.1885 -4.6541 -0.4048 19 1 2.3729 -5.0936 -1.3740 20 6 2.2266 -5.4457 0.7348 21 7 2.4521 -6.7383 0.6310 22 14 1.9580 -4.6765 2.4157 23 1 1.9076 -5.7443 3.4465 24 1 3.0763 -3.7478 2.7195 25 1 0.6767 -3.9258 2.4176 26 6 1.5015 -2.4006 0.7732 27 1 -0.3633 0.0910 1.0237 28 1 -0.3634 0.8409 -0.5906 29 1 -0.3634 -0.9320 -0.4329 30 1 0.0875 1.7215 1.6540 31 1 -1.1395 3.8364 1.8671 32 1 -0.5424 5.7690 0.4770 33 1 1.3536 6.7016 -1.6766 34 1 3.2718 5.4265 -2.8951 35 1 3.2575 -1.1542 0.2258 36 1 2.7144 -2.1807 -1.9442 37 1 0.9319 -1.9771 -1.6659 38 1 2.6640 -7.1259 -0.2326 39 1 0.4209 -2.2770 0.8443 40 1 1.9654 -2.6202 1.7347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043947607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:42 Heat of formation + Delta-G solvation = 104.476533 kcal Electronic energy + Delta-G solvation = -23811.007347 eV Core-core repulsion = 20401.071397 eV Total energy + Delta-G solvation = -3409.935950 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.57369 -40.00076 -38.14256 -36.92351 -34.71510 -32.47732 -31.96682 -29.72180 -29.13690 -27.91461 -26.92353 -25.45877 -24.37037 -22.47436 -21.96361 -21.15494 -20.03420 -19.03256 -17.93174 -17.63536 -17.18368 -16.51573 -16.05972 -15.47773 -15.39973 -15.03357 -14.57339 -14.26949 -13.93910 -13.72126 -13.34002 -13.25261 -13.15818 -12.65023 -12.35721 -12.15546 -11.99364 -11.96332 -11.74228 -11.58639 -11.46805 -11.34464 -10.58924 -10.52476 -10.00674 -9.74365 -9.36617 -9.13330 -9.01356 -8.46082 -8.36125 -7.94177 -7.24025 -6.36042 -3.30807 0.62306 1.42756 2.34328 2.81444 2.99425 3.05038 3.37149 3.42129 3.62860 3.70464 4.37055 4.52024 4.54766 4.73576 4.77466 4.81645 4.99763 5.02758 5.16215 5.19577 5.32311 5.35962 5.47532 5.54947 5.62576 5.69080 5.72315 5.80154 5.83388 6.09537 6.12947 6.14529 6.29884 6.30772 6.42033 6.45177 6.50269 6.86272 6.91605 7.01354 7.30328 7.48674 8.17807 8.18177 8.91551 9.43034 10.26690 11.15456 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.030040 B = 0.003603 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.852308 B = 7768.544071 C = 8269.781288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.593 5.593 3 C 0.558 3.442 4 O -0.545 6.545 5 C -0.139 4.139 6 C -0.063 4.063 7 C -0.156 4.156 8 C -0.050 4.050 9 C -0.119 4.119 10 C -0.205 4.205 11 C 0.051 3.949 12 N -0.585 5.585 13 H 0.422 0.578 14 C 0.143 3.857 15 C 0.099 3.901 16 C 0.112 3.888 17 N -0.620 5.620 18 C -0.304 4.304 19 H 0.084 0.916 20 C -0.022 4.022 21 N -0.932 5.932 22 Si 1.073 2.927 23 H -0.294 1.294 24 H -0.292 1.292 25 H -0.289 1.289 26 C 0.093 3.907 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.148 0.852 34 H 0.172 0.828 35 H 0.125 0.875 36 H 0.050 0.950 37 H 0.041 0.959 38 H 0.261 0.739 39 H 0.049 0.951 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.378 26.465 -2.526 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.324 5.324 3 C 0.347 3.653 4 O -0.424 6.424 5 C -0.145 4.145 6 C -0.083 4.083 7 C -0.175 4.175 8 C -0.069 4.069 9 C -0.124 4.124 10 C -0.230 4.230 11 C -0.075 4.075 12 N -0.187 5.187 13 H 0.260 0.740 14 C 0.032 3.968 15 C -0.005 4.005 16 C -0.015 4.015 17 N -0.348 5.348 18 C -0.430 4.430 19 H 0.102 0.898 20 C -0.221 4.221 21 N -0.574 5.574 22 Si 0.907 3.093 23 H -0.222 1.222 24 H -0.220 1.220 25 H -0.216 1.216 26 C -0.034 4.034 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.189 0.811 35 H 0.143 0.857 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.720 25.716 -1.081 26.366 hybrid contribution 0.299 0.004 -1.866 1.890 sum -5.420 25.720 -2.947 26.449 Atomic orbital electron populations 1.22015 0.79513 1.03645 1.01895 1.47828 1.07097 1.05694 1.71794 1.18357 0.87016 0.83537 0.76381 1.90765 1.13766 1.87414 1.50465 1.18870 1.00966 0.92462 1.02161 1.21215 0.92523 0.98425 0.96134 1.20808 1.01930 0.92910 1.01847 1.20666 0.94524 0.98454 0.93226 1.19191 0.99087 0.93398 1.00704 1.21680 1.00417 0.99762 1.01165 1.21917 1.00694 0.84089 1.00780 1.41863 1.30838 1.12883 1.33104 0.73957 1.17938 0.91795 0.94653 0.92366 1.23638 0.97801 0.79645 0.99389 1.22750 0.98772 0.86142 0.93878 1.45741 1.79127 1.03960 1.06013 1.20140 1.46767 0.80117 0.95975 0.89832 1.25747 0.99255 0.95046 1.02073 1.70923 1.49392 1.09704 1.27384 0.83657 0.76203 0.73619 0.75870 1.22162 1.22010 1.21599 1.23200 0.97638 0.88151 0.94368 0.92160 0.90990 0.90075 0.84699 0.85323 0.85687 0.83418 0.81118 0.85747 0.93188 0.94172 0.92838 0.93307 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 7.77 59.84 0.46 1.32 16 2 N -0.59 -9.12 3.11 -174.80 -0.54 -9.66 16 3 C 0.56 8.87 7.27 -12.48 -0.09 8.78 16 4 O -0.55 -10.30 16.15 5.28 0.09 -10.22 16 5 C -0.14 -1.84 4.94 -104.88 -0.52 -2.36 16 6 C -0.06 -0.68 7.93 -39.14 -0.31 -0.99 16 7 C -0.16 -1.40 10.00 -39.67 -0.40 -1.80 16 8 C -0.05 -0.47 10.09 -39.22 -0.40 -0.86 16 9 C -0.12 -1.33 6.37 -105.15 -0.67 -1.99 16 10 C -0.21 -1.87 11.09 -37.64 -0.42 -2.29 16 11 C 0.05 0.44 11.82 -16.70 -0.20 0.25 16 12 N -0.59 -6.56 6.02 -10.45 -0.06 -6.62 16 13 H 0.42 4.64 8.63 -40.82 -0.35 4.28 16 14 C 0.14 1.83 6.89 -83.76 -0.58 1.25 16 15 C 0.10 1.86 4.55 -67.68 -0.31 1.55 16 16 C 0.11 2.26 8.23 -8.50 -0.07 2.19 16 17 N -0.62 -15.35 3.67 -184.61 -0.68 -16.03 16 18 C -0.30 -8.81 11.09 -15.06 -0.17 -8.98 16 19 H 0.08 2.54 8.05 -52.48 -0.42 2.12 16 20 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 21 N -0.93 -29.49 13.70 55.49 0.76 -28.73 16 22 Si 1.07 26.94 24.99 -169.99 -4.25 22.70 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.29 -7.06 6.80 56.52 0.38 -6.68 16 25 H -0.29 -6.63 6.33 56.52 0.36 -6.27 16 26 C 0.09 1.95 5.36 -8.36 -0.04 1.91 16 27 H 0.06 0.60 6.61 -51.93 -0.34 0.26 16 28 H 0.07 0.74 6.76 -51.93 -0.35 0.39 16 29 H 0.08 1.01 5.97 -51.93 -0.31 0.70 16 30 H 0.14 1.27 5.98 -52.49 -0.31 0.96 16 31 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.12 2.54 7.33 -51.93 -0.38 2.15 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.04 0.75 7.04 -51.93 -0.37 0.39 16 38 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 39 H 0.05 0.95 6.43 -51.93 -0.33 0.62 16 40 H 0.05 1.15 3.94 -51.93 -0.20 0.95 16 LS Contribution 322.64 15.07 4.86 4.86 Total: -1.00 -35.21 322.64 -8.33 -43.54 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.71 Total: 2.95 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -3.79 Total: -2.78 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -0.53 Total: -61.05 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 26.94 SS G_CDS: -4.25 Total: 22.70 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.21 -8.33 -43.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043947607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.013 kcal (2) G-P(sol) polarization free energy of solvation -35.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds