Wall clock time and date at job start Tue Mar 31 2020 07:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 H 1.08994 * 115.56342 * 34.41271 * 16 14 13 18 18 C 1.53137 * 117.51312 * 248.66955 * 16 14 13 19 19 C 1.52405 * 117.51238 * 180.17028 * 16 14 13 20 20 C 1.53791 * 121.12455 * 218.07464 * 19 16 14 21 21 C 1.54482 * 102.20905 * 118.08319 * 20 19 16 22 22 C 1.51425 * 105.23330 * 25.72278 * 21 20 19 23 23 C 1.38474 * 130.36193 * 163.12731 * 22 21 20 24 24 C 1.38090 * 120.26468 * 179.97438 * 23 22 21 25 25 C 1.38249 * 119.91420 * 0.03362 * 24 23 22 26 26 C 1.38089 * 119.94107 * 0.02562 * 25 24 23 27 27 C 1.38380 * 109.80315 * 343.13830 * 22 21 20 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 35 35 H 1.09002 * 117.51165 * 0.02562 * 18 16 14 36 36 H 1.08996 * 117.51242 * 145.07051 * 18 16 14 37 37 H 1.08998 * 110.85175 * 236.25997 * 20 19 16 38 38 H 1.08994 * 110.85573 * 359.69893 * 20 19 16 39 39 H 1.08999 * 110.28811 * 144.65772 * 21 20 19 40 40 H 1.09000 * 110.28735 * 266.78330 * 21 20 19 41 41 H 1.08004 * 119.86316 * 359.94234 * 23 22 21 42 42 H 1.07998 * 120.04184 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.02804 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.86023 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 1 0.4278 2.8824 -3.5644 18 6 -0.1213 4.8609 -2.6374 19 6 -1.3517 3.9636 -2.7215 20 6 -2.1966 3.8887 -4.0043 21 6 -3.4329 3.0900 -3.5350 22 6 -3.5286 3.3440 -2.0453 23 6 -4.5830 3.1511 -1.1686 24 6 -4.4399 3.4575 0.1703 25 6 -3.2398 3.9595 0.6382 26 6 -2.1871 4.1541 -0.2341 27 6 -2.3273 3.8466 -1.5772 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8293 -0.0605 2.9503 34 1 2.2720 2.1232 -1.9977 35 1 0.0640 5.3755 -1.6945 36 1 0.1665 5.4071 -3.5356 37 1 -2.4830 4.8857 -4.3391 38 1 -1.6620 3.3558 -4.7905 39 1 -4.3296 3.4512 -4.0384 40 1 -3.2918 2.0267 -3.7288 41 1 -5.5212 2.7599 -1.5336 42 1 -5.2645 3.3052 0.8509 43 1 -3.1260 4.2002 1.6849 44 1 -1.2503 4.5467 0.1328 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183880630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:03 Heat of formation + Delta-G solvation = 9.992176 kcal Electronic energy + Delta-G solvation = -24777.797110 eV Core-core repulsion = 21467.304354 eV Total energy + Delta-G solvation = -3310.492756 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.56629 -38.64081 -36.68594 -34.94321 -33.50901 -32.32585 -30.90492 -30.20875 -28.66667 -27.11634 -24.97762 -23.83840 -22.67044 -22.38219 -20.77736 -20.25327 -19.32937 -18.96803 -17.23647 -16.06803 -15.82422 -15.19335 -15.06280 -14.71503 -14.65297 -14.46417 -14.06259 -13.70198 -13.32187 -12.78874 -12.65485 -12.55066 -12.19209 -12.04138 -11.92806 -11.60593 -11.47651 -11.41573 -11.22154 -10.97746 -10.88308 -10.81090 -10.44283 -10.29653 -10.28431 -10.13860 -10.06078 -9.59024 -9.05887 -8.99546 -8.48010 -8.26770 -7.92992 -7.72915 -6.11022 -4.20457 1.65135 1.81561 3.20536 3.25564 3.31002 3.32026 3.91817 4.06202 4.29355 4.35293 4.59021 4.67314 4.79004 4.96456 5.12668 5.20139 5.33562 5.36119 5.45655 5.52722 5.58554 5.67462 5.72556 5.79713 5.85627 5.97297 6.04850 6.08056 6.19213 6.32521 6.43193 6.50754 6.51077 6.71183 6.78743 6.92682 7.05592 7.08564 7.24091 7.37652 7.41285 7.52058 7.64506 7.77371 7.93178 8.20856 8.73523 8.81244 9.22488 9.47666 10.94109 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.004196 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.853538 B = 6671.402479 C = 7208.624794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.706 5.706 14 C 0.525 3.475 15 O -0.532 6.532 16 C -0.166 4.166 17 H 0.119 0.881 18 C -0.140 4.140 19 C -0.062 4.062 20 C -0.084 4.084 21 C -0.076 4.076 22 C -0.100 4.100 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.132 4.132 26 C -0.036 4.036 27 C -0.045 4.045 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.019 0.981 31 H 0.097 0.903 32 H 0.029 0.971 33 H 0.264 0.736 34 H 0.386 0.614 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.527 7.190 -10.924 17.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.172 3.828 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.309 3.691 15 O -0.411 6.411 16 C -0.188 4.188 17 H 0.137 0.863 18 C -0.178 4.178 19 C -0.063 4.063 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.100 4.100 23 C -0.142 4.142 24 C -0.138 4.138 25 C -0.150 4.150 26 C -0.054 4.054 27 C -0.045 4.045 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.116 0.884 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.218 0.782 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.044 7.037 -10.032 17.182 hybrid contribution 1.504 -0.304 -0.164 1.543 sum -10.540 6.734 -10.196 16.137 Atomic orbital electron populations 1.21811 0.98216 0.97842 1.01295 1.21924 0.92652 0.99889 1.02078 1.18726 0.93989 0.89080 0.81046 0.93437 1.21211 0.90843 1.38999 1.06225 0.92235 1.24878 0.98499 0.94830 0.95410 1.69889 1.35166 1.37605 1.09316 0.86537 0.85007 0.78286 0.77437 1.20210 1.21146 1.20194 1.46468 1.14511 1.55901 1.18436 1.19427 0.82715 0.79267 0.87671 1.90706 1.50781 1.59409 1.40173 1.22450 1.00015 0.96877 0.99430 0.86333 1.22937 1.00011 0.90990 1.03839 1.20265 0.87520 1.03752 0.94759 1.21816 0.94976 1.00563 0.94742 1.20982 0.97996 1.00575 0.91768 1.20420 0.94266 0.99900 0.95461 1.20376 0.97917 1.02803 0.93147 1.20904 0.97638 1.00150 0.95094 1.20958 0.93351 1.01386 0.99335 1.20507 0.97182 0.96116 0.91574 1.19329 0.92969 0.99256 0.92943 0.94154 0.93246 0.96160 0.88447 0.95236 0.92555 0.78162 0.88120 0.87811 0.90404 0.90602 0.91028 0.90464 0.87074 0.86653 0.86505 0.86426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.52 37.16 0.32 -2.76 16 2 C -0.13 -3.11 5.45 -26.74 -0.15 -3.25 16 3 C 0.27 6.82 2.24 -69.09 -0.15 6.67 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.76 11.29 55.43 0.63 -24.13 16 9 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.71 -14.45 5.02 -54.94 -0.28 -14.72 16 14 C 0.52 10.09 6.18 -10.98 -0.07 10.02 16 15 O -0.53 -11.64 8.96 5.56 0.05 -11.59 16 16 C -0.17 -2.42 6.04 -92.00 -0.56 -2.98 16 17 H 0.12 1.46 8.14 -51.93 -0.42 1.03 16 18 C -0.14 -1.76 9.95 -26.91 -0.27 -2.03 16 19 C -0.06 -0.85 2.34 -155.74 -0.36 -1.22 16 20 C -0.08 -0.89 6.85 -25.54 -0.17 -1.06 16 21 C -0.08 -0.87 6.77 -26.75 -0.18 -1.05 16 22 C -0.10 -1.46 6.14 -104.13 -0.64 -2.10 16 23 C -0.12 -1.73 10.03 -39.55 -0.40 -2.12 16 24 C -0.12 -1.69 10.05 -39.63 -0.40 -2.09 16 25 C -0.13 -2.07 10.04 -39.63 -0.40 -2.46 16 26 C -0.04 -0.61 7.45 -39.54 -0.29 -0.90 16 27 C -0.04 -0.72 4.86 -104.41 -0.51 -1.22 16 28 H 0.04 0.90 5.65 -51.93 -0.29 0.61 16 29 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.39 6.98 8.54 -40.82 -0.35 6.63 16 35 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 42 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.12 2.13 7.23 -52.49 -0.38 1.75 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -29.91 349.33 -10.73 -40.64 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.74 Total: 10.19 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -4.63 Total: -21.23 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.35 Total: -38.85 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.05 Total: -11.59 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.91 -10.73 -40.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183880630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.633 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds