Wall clock time and date at job start Tue Mar 31 2020 07:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47037 * 2 1 4 4 C 1.52995 * 109.46940 * 240.00527 * 2 1 3 5 5 C 1.53002 * 109.47325 * 120.00381 * 2 1 3 6 6 N 1.46497 * 109.46946 * 64.33443 * 5 2 1 7 7 C 1.46501 * 119.99655 * 270.61952 * 6 5 2 8 8 C 1.50699 * 109.47379 * 274.90685 * 7 6 5 9 9 H 1.07997 * 119.99795 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99985 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99819 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99979 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47188 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47051 * 120.00146 * 12 10 8 15 15 H 1.48499 * 109.46993 * 240.00120 * 12 10 8 16 16 C 1.34773 * 120.00207 * 90.35170 * 6 5 2 17 17 O 1.21288 * 119.99923 * 355.61880 * 16 6 5 18 18 C 1.50703 * 120.00203 * 175.62235 * 16 6 5 19 19 H 1.08999 * 109.38599 * 313.72615 * 18 16 6 20 20 C 1.52574 * 109.38892 * 193.92339 * 18 16 6 21 21 C 1.52635 * 110.70191 * 169.07511 * 20 18 16 22 22 C 1.53096 * 109.86861 * 70.81753 * 21 20 18 23 23 S 1.81742 * 108.84396 * 296.93877 * 22 21 20 24 24 C 1.53092 * 109.39152 * 73.52413 * 18 16 6 25 25 H 1.08996 * 109.46930 * 299.99090 * 1 2 3 26 26 H 1.09001 * 109.47201 * 59.99564 * 1 2 3 27 27 H 1.09000 * 109.46384 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47305 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46998 * 300.00480 * 3 2 1 30 30 H 1.09003 * 109.46647 * 60.00252 * 3 2 1 31 31 H 1.08999 * 109.47175 * 305.07613 * 4 2 1 32 32 H 1.08999 * 109.47400 * 65.07627 * 4 2 1 33 33 H 1.09002 * 109.47346 * 185.08121 * 4 2 1 34 34 H 1.08999 * 109.47022 * 304.33416 * 5 2 1 35 35 H 1.09000 * 109.46895 * 184.33504 * 5 2 1 36 36 H 1.09003 * 109.46981 * 34.91264 * 7 6 5 37 37 H 1.09004 * 109.46759 * 154.90724 * 7 6 5 38 38 H 0.96994 * 119.99795 * 179.97438 * 11 10 8 39 39 H 1.08997 * 109.23253 * 289.49667 * 20 18 16 40 40 H 1.09006 * 109.23058 * 48.85833 * 20 18 16 41 41 H 1.09002 * 109.45918 * 310.68030 * 21 20 18 42 42 H 1.09000 * 109.31934 * 190.87270 * 21 20 18 43 43 H 1.08996 * 109.57270 * 177.12981 * 22 21 20 44 44 H 1.09003 * 109.68426 * 56.81077 * 22 21 20 45 45 H 1.09005 * 109.57822 * 302.98863 * 24 18 16 46 46 H 1.09002 * 109.57207 * 63.23616 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2492 6 7 1.6389 -2.1294 1.1980 7 6 0.3540 -2.5459 1.7653 8 6 0.5148 -2.7972 3.2424 9 1 1.4777 -2.6600 3.7118 10 6 -0.5674 -3.2024 3.9947 11 7 -1.7399 -3.3700 3.4229 12 14 -0.3682 -3.5132 5.8258 13 1 1.0397 -3.2557 6.2213 14 1 -1.2692 -2.6073 6.5825 15 1 -0.7168 -4.9245 6.1290 16 6 2.4493 -3.0406 0.6243 17 8 3.4732 -2.6844 0.0802 18 6 2.0835 -4.5022 0.6587 19 1 1.7699 -4.7730 1.6668 20 6 3.2976 -5.3376 0.2640 21 6 3.0491 -6.8171 0.5455 22 6 2.0215 -7.3699 -0.4457 23 16 0.4417 -6.5067 -0.1960 24 6 0.9335 -4.7613 -0.3181 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6043 -1.7192 -1.2960 32 1 1.7528 -0.1574 -2.1369 33 1 3.1262 -0.8007 -1.2050 34 1 1.6148 -0.2544 2.1375 35 1 3.1273 -0.6545 1.2888 36 1 -0.3843 -1.7594 1.6087 37 1 0.0200 -3.4605 1.2753 38 1 -2.5011 -3.6554 3.9520 39 1 3.4970 -5.2014 -0.7989 40 1 4.1636 -5.0052 0.8365 41 1 2.6719 -6.9351 1.5613 42 1 3.9848 -7.3663 0.4407 43 1 1.8856 -8.4375 -0.2734 44 1 2.3700 -7.2060 -1.4655 45 1 0.0865 -4.1245 -0.0624 46 1 1.2612 -4.5425 -1.3344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355355449.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:05 Heat of formation + Delta-G solvation = -71.531141 kcal Electronic energy + Delta-G solvation = -24370.786787 eV Core-core repulsion = 21192.202865 eV Total energy + Delta-G solvation = -3178.583921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.166 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40681 -38.52865 -37.01725 -36.06077 -34.26327 -32.66457 -29.50046 -28.32419 -28.10458 -28.03843 -27.36450 -25.21041 -23.98116 -22.09742 -20.25526 -19.47401 -18.72830 -18.03174 -17.47240 -16.99599 -16.58824 -16.21332 -15.97791 -15.44068 -15.20812 -14.92819 -14.65940 -14.46159 -14.24841 -14.08990 -13.92170 -13.64625 -13.47835 -13.12450 -13.03600 -12.74269 -12.62376 -12.54595 -12.44917 -12.42144 -12.34124 -12.13786 -11.97511 -11.87475 -11.85222 -11.59794 -11.49987 -11.39645 -10.80966 -10.53892 -10.29680 -9.32557 -8.66234 -8.16613 -6.29616 0.78412 1.38799 1.42560 1.50381 1.52189 1.84100 2.34385 2.47860 3.13494 3.64437 3.70359 3.74330 3.90550 3.92430 3.96005 4.08224 4.12703 4.19930 4.44457 4.55470 4.58466 4.60832 4.63637 4.76123 4.78932 4.84573 4.90043 4.93645 4.94651 4.98504 5.02724 5.06904 5.09890 5.11900 5.23620 5.27072 5.32578 5.37637 5.51550 5.54421 5.69979 5.90843 6.11418 6.63306 6.85901 7.33956 7.45493 8.88083 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.009137 B = 0.008223 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.870479 B = 3404.177449 C = 5438.612765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 C -0.130 4.130 4 C -0.119 4.119 5 C 0.127 3.873 6 N -0.589 5.589 7 C 0.238 3.762 8 C -0.545 4.545 9 H 0.048 0.952 10 C 0.026 3.974 11 N -0.914 5.914 12 Si 0.948 3.052 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.280 1.280 16 C 0.519 3.481 17 O -0.579 6.579 18 C -0.100 4.100 19 H 0.091 0.909 20 C -0.100 4.100 21 C -0.116 4.116 22 C -0.072 4.072 23 S -0.294 6.294 24 C -0.060 4.060 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.028 0.972 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.042 0.958 38 H 0.266 0.734 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.124 0.876 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.745 -0.983 -8.106 10.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.081 4.081 3 C -0.188 4.188 4 C -0.176 4.176 5 C 0.004 3.996 6 N -0.317 5.317 7 C 0.117 3.883 8 C -0.583 4.583 9 H 0.066 0.934 10 C -0.175 4.175 11 N -0.553 5.553 12 Si 0.774 3.226 13 H -0.197 1.197 14 H -0.205 1.205 15 H -0.205 1.205 16 C 0.306 3.694 17 O -0.461 6.461 18 C -0.123 4.123 19 H 0.110 0.890 20 C -0.138 4.138 21 C -0.154 4.154 22 C -0.219 4.219 23 S -0.067 6.067 24 C -0.208 4.208 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.123 0.877 43 H 0.142 0.858 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.023 -1.294 -8.166 10.229 hybrid contribution 0.659 0.419 1.138 1.380 sum 6.682 -0.875 -7.028 9.737 Atomic orbital electron populations 1.21915 0.94595 1.01266 1.01570 1.20927 0.95826 0.96451 0.94916 1.21737 1.00975 0.93480 1.02559 1.21715 1.00653 0.98706 0.96549 1.21484 0.99340 0.80959 0.97832 1.48110 1.20544 1.07423 1.55655 1.19510 0.80071 0.96245 0.92467 1.21681 0.95484 1.46467 0.94698 0.93359 1.25539 0.94822 0.94946 1.02162 1.69998 1.00855 1.47012 1.37426 0.85654 0.78102 0.77885 0.80933 1.19660 1.20488 1.20528 1.20568 0.82949 0.88332 0.77509 1.90560 1.27119 1.81975 1.46486 1.21420 0.97060 0.92383 1.01397 0.89049 1.21290 0.95744 0.94474 1.02290 1.21724 0.99988 0.94489 0.99241 1.23571 0.92711 1.02601 1.03062 1.87122 1.19237 1.04390 1.95923 1.23401 1.00780 0.95299 1.01361 0.93173 0.91563 0.94022 0.92458 0.91159 0.92173 0.95268 0.92112 0.93014 0.91369 0.91697 0.95027 0.94061 0.92511 0.91095 0.91475 0.91525 0.87721 0.85831 0.88471 0.88318 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 7.45 71.98 0.54 -3.75 16 2 C -0.08 -2.46 0.85 -52.18 -0.04 -2.50 16 3 C -0.13 -3.16 8.47 71.98 0.61 -2.55 16 4 C -0.12 -3.72 7.00 71.98 0.50 -3.21 16 5 C 0.13 4.65 4.60 86.38 0.40 5.05 16 6 N -0.59 -24.03 1.99 -826.14 -1.65 -25.67 16 7 C 0.24 11.06 3.89 85.63 0.33 11.39 16 8 C -0.54 -28.17 9.14 25.60 0.23 -27.94 16 9 H 0.05 2.56 7.81 -2.91 -0.02 2.54 16 10 C 0.03 1.37 5.46 84.66 0.46 1.83 16 11 N -0.91 -50.26 13.29 21.45 0.28 -49.98 16 12 Si 0.95 42.21 29.54 68.60 2.03 44.23 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 14 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 15 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 16 C 0.52 20.63 5.42 87.66 0.47 21.11 16 17 O -0.58 -23.98 13.37 -3.05 -0.04 -24.02 16 18 C -0.10 -3.59 1.56 -11.65 -0.02 -3.61 16 19 H 0.09 3.81 7.37 -2.39 -0.02 3.79 16 20 C -0.10 -2.93 4.29 30.33 0.13 -2.80 16 21 C -0.12 -2.72 5.76 30.51 0.18 -2.54 16 22 C -0.07 -1.62 6.45 72.01 0.46 -1.15 16 23 S -0.29 -9.42 22.33 -56.49 -1.26 -10.68 16 24 C -0.06 -2.07 5.36 72.01 0.39 -1.68 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.04 1.51 5.76 -2.39 -0.01 1.50 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.03 1.01 6.64 -2.39 -0.02 0.99 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.74 7.04 -2.39 -0.02 1.72 16 34 H 0.07 2.58 8.08 -2.39 -0.02 2.56 16 35 H 0.06 2.41 7.48 -2.39 -0.02 2.39 16 36 H 0.03 1.56 5.71 -2.39 -0.01 1.55 16 37 H 0.04 2.01 4.02 -2.38 -0.01 2.00 16 38 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 39 H 0.07 2.01 8.08 -2.39 -0.02 1.99 16 40 H 0.07 2.07 7.94 -2.38 -0.02 2.05 16 41 H 0.07 1.76 8.05 -2.39 -0.02 1.74 16 42 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.10 3.88 5.44 -2.38 -0.01 3.87 16 46 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -58.03 356.64 4.95 -53.09 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.94 Total: 25.39 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 4.65 Total: -12.36 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -1.36 Total: -75.65 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.04 Total: -24.02 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: -9.42 SS G_CDS: -1.26 Total: -10.68 kcal Total: -58.03 4.95 -53.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355355449.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.446 kcal (2) G-P(sol) polarization free energy of solvation -58.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds