Wall clock time and date at job start Tue Mar 31 2020 07:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99914 * 2 1 4 4 C 1.53002 * 109.46973 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.46698 * 65.00380 * 4 3 2 6 6 C 1.42901 * 113.99881 * 179.97438 * 5 4 3 7 7 H 1.09001 * 110.88510 * 333.88589 * 6 5 4 8 8 C 1.55160 * 111.03398 * 97.78263 * 6 5 4 9 9 C 1.54339 * 103.01630 * 153.39668 * 8 6 5 10 10 N 1.47016 * 107.26923 * 338.14195 * 9 8 6 11 11 C 1.34774 * 125.65072 * 178.85088 * 10 9 8 12 12 O 1.21284 * 120.00066 * 179.69194 * 11 10 9 13 13 C 1.50706 * 119.99833 * 359.69262 * 11 10 9 14 14 C 1.53002 * 109.46994 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46891 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.46947 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47238 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99515 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00176 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99883 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00043 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47216 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 119.99848 * 21 19 17 24 24 H 1.48501 * 109.47057 * 239.99829 * 21 19 17 25 25 C 1.47428 * 108.70086 * 358.58324 * 10 9 8 26 26 H 1.09000 * 109.47184 * 299.99768 * 1 2 3 27 27 H 1.08998 * 109.47329 * 59.99927 * 1 2 3 28 28 H 1.09005 * 109.47492 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47079 * 60.00119 * 3 2 1 30 30 H 1.08998 * 109.47282 * 300.00247 * 3 2 1 31 31 H 1.08995 * 109.47360 * 304.99914 * 4 3 2 32 32 H 1.09001 * 109.46899 * 184.99939 * 4 3 2 33 33 H 1.08999 * 110.72078 * 271.95554 * 8 6 5 34 34 H 1.08993 * 110.72246 * 35.05244 * 8 6 5 35 35 H 1.09007 * 109.98638 * 218.65987 * 9 8 6 36 36 H 1.09002 * 109.78000 * 97.50208 * 9 8 6 37 37 H 1.08998 * 109.46836 * 59.99586 * 13 11 10 38 38 H 1.09001 * 109.46547 * 299.99940 * 13 11 10 39 39 H 1.08992 * 109.47056 * 59.99637 * 14 13 11 40 40 H 1.08996 * 109.46698 * 299.99753 * 14 13 11 41 41 H 1.09001 * 109.47372 * 59.99964 * 15 14 13 42 42 H 1.09004 * 109.47108 * 299.99708 * 15 14 13 43 43 H 1.09001 * 109.46832 * 59.99979 * 16 15 14 44 44 H 1.09000 * 109.47611 * 300.00276 * 16 15 14 45 45 H 0.97004 * 119.99507 * 180.02562 * 20 19 17 46 46 H 1.09002 * 110.36534 * 143.19244 * 25 10 9 47 47 H 1.08993 * 110.37196 * 265.40777 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9657 0.5793 -1.2202 6 6 5.3821 0.4197 -1.3222 7 1 5.9014 1.1599 -0.7133 8 6 5.8099 -1.0199 -0.9324 9 6 7.1230 -1.2174 -1.7190 10 7 7.1109 -0.2610 -2.8355 11 6 8.0927 -0.1032 -3.7453 12 8 7.9726 0.7166 -4.6310 13 6 9.3397 -0.9454 -3.6620 14 6 10.2862 -0.5695 -4.8038 15 6 11.5524 -1.4241 -4.7188 16 6 12.4986 -1.0487 -5.8610 17 6 13.7461 -1.8900 -5.7770 18 1 13.8531 -2.6198 -4.9880 19 6 14.7508 -1.7281 -6.7072 20 7 14.6207 -0.8390 -7.6676 21 14 16.2968 -2.7714 -6.6034 22 1 16.1977 -3.6888 -5.4399 23 1 16.4426 -3.5657 -7.8496 24 1 17.4795 -1.8887 -6.4379 25 6 5.8442 0.4923 -2.7989 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.8508 0.5685 0.8427 32 1 3.9784 2.1765 0.0902 33 1 5.9858 -1.0927 0.1409 34 1 5.0593 -1.7442 -1.2486 35 1 7.1773 -2.2359 -2.1037 36 1 7.9755 -1.0184 -1.0696 37 1 9.0725 -1.9991 -3.7428 38 1 9.8345 -0.7683 -2.7070 39 1 10.5532 0.4840 -4.7225 40 1 9.7915 -0.7463 -5.7588 41 1 11.2857 -2.4779 -4.7999 42 1 12.0469 -1.2469 -3.7637 43 1 12.7653 0.0051 -5.7803 44 1 12.0039 -1.2261 -6.8159 45 1 15.3274 -0.7254 -8.3222 46 1 6.0104 1.5285 -3.0938 47 1 5.1067 0.0264 -3.4523 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588164708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:10 Heat of formation + Delta-G solvation = -169.605878 kcal Electronic energy + Delta-G solvation = -23553.949678 eV Core-core repulsion = 19928.360046 eV Total energy + Delta-G solvation = -3625.589632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.22511 -39.67423 -38.67153 -37.27473 -36.60501 -34.61603 -32.58930 -31.39157 -30.95871 -29.50468 -27.40750 -27.07923 -24.91672 -23.66239 -23.38558 -22.19422 -21.69616 -20.19755 -18.46217 -18.38768 -18.09508 -17.60664 -17.09913 -16.76425 -16.50755 -16.35056 -16.14794 -15.74705 -15.57035 -15.13002 -14.75412 -14.52792 -14.35783 -14.05079 -13.75594 -13.51060 -13.32787 -13.27327 -13.22201 -12.84098 -12.72182 -12.64466 -12.32757 -12.29145 -12.15185 -12.13916 -12.03261 -11.64113 -11.37368 -11.35374 -11.15442 -10.82826 -10.64515 -10.54915 -10.53229 -9.74087 -8.17925 -6.30148 1.41192 1.42215 1.55730 1.56775 1.76493 2.42695 2.70446 2.87109 3.14916 3.36610 3.59130 3.81456 3.92321 4.03282 4.10455 4.11936 4.20967 4.25131 4.31100 4.44210 4.51718 4.55512 4.59254 4.61609 4.64352 4.68160 4.70324 4.78344 4.82951 4.85107 4.86380 4.87978 5.00108 5.11308 5.19093 5.25145 5.34649 5.37976 5.57526 5.78733 5.88827 6.15536 6.26062 6.28240 6.41477 6.88509 7.09974 7.39593 8.94532 Molecular weight = 299.19amu Principal moments of inertia in cm(-1) A = 0.053980 B = 0.001792 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.588152 B =15619.958664 C =15880.295238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.057 3.943 4 C 0.057 3.943 5 O -0.387 6.387 6 C 0.084 3.916 7 H 0.096 0.904 8 C -0.142 4.142 9 C 0.095 3.905 10 N -0.620 5.620 11 C 0.525 3.475 12 O -0.589 6.589 13 C -0.120 4.120 14 C -0.096 4.096 15 C -0.095 4.095 16 C 0.017 3.983 17 C -0.541 4.541 18 H 0.067 0.933 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.970 3.030 22 H -0.257 1.257 23 H -0.280 1.280 24 H -0.279 1.279 25 C 0.104 3.896 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.043 0.957 40 H 0.041 0.959 41 H 0.061 0.939 42 H 0.063 0.937 43 H -0.015 1.015 44 H -0.016 1.016 45 H 0.262 0.738 46 H 0.067 0.933 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.790 1.177 23.798 36.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.019 4.019 4 C -0.019 4.019 5 O -0.306 6.306 6 C 0.025 3.975 7 H 0.114 0.886 8 C -0.180 4.180 9 C -0.027 4.027 10 N -0.355 5.355 11 C 0.316 3.684 12 O -0.469 6.469 13 C -0.159 4.159 14 C -0.135 4.135 15 C -0.132 4.132 16 C -0.020 4.020 17 C -0.579 4.579 18 H 0.085 0.915 19 C -0.204 4.204 20 N -0.579 5.579 21 Si 0.795 3.205 22 H -0.180 1.180 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.020 4.020 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.003 0.997 44 H 0.002 0.998 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -27.747 1.453 23.014 36.078 hybrid contribution 0.659 0.275 -0.667 0.977 sum -27.088 1.728 22.347 35.159 Atomic orbital electron populations 1.22890 0.79758 1.03612 1.00768 1.87909 1.21203 1.28627 1.95597 1.22732 0.92178 0.85043 1.01962 1.22828 0.93675 0.98548 0.86822 1.87940 1.20911 1.82140 1.39593 1.23124 0.81981 0.97903 0.94513 0.88633 1.23097 0.96179 0.96750 1.02004 1.22340 0.99670 0.93366 0.87319 1.48467 1.17592 1.39698 1.29774 1.20997 0.84575 0.83179 0.79667 1.90698 1.81001 1.38739 1.36479 1.21644 0.91682 1.00813 1.01781 1.21263 0.95247 0.99392 0.97566 1.21440 0.94080 0.98904 0.98784 1.19074 0.94155 0.94940 0.93826 1.21793 1.02869 1.20848 1.12389 0.91472 1.26098 1.02565 0.96836 0.94915 1.70150 1.34978 1.36267 1.16462 0.85319 0.78285 0.78486 0.78450 1.18028 1.20533 1.20482 1.22074 0.85495 0.96960 0.97442 0.92604 0.93770 0.89068 0.89296 0.92743 0.91359 0.89613 0.87198 0.90022 0.89521 0.88683 0.86513 0.86164 0.93774 0.93997 0.92026 0.91850 0.99653 0.99755 0.92895 0.91488 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -6.49 10.67 -144.34 -1.54 -8.03 16 3 C 0.06 0.61 6.32 71.98 0.45 1.07 16 4 C 0.06 0.61 6.16 71.98 0.44 1.05 16 5 O -0.39 -6.54 10.12 -144.34 -1.46 -8.00 16 6 C 0.08 1.22 3.55 31.99 0.11 1.33 16 7 H 0.10 1.08 7.83 -2.39 -0.02 1.06 16 8 C -0.14 -1.58 6.69 31.79 0.21 -1.37 16 9 C 0.09 1.24 6.49 86.74 0.56 1.80 16 10 N -0.62 -13.80 3.33 -811.76 -2.70 -16.50 16 11 C 0.52 15.72 7.85 87.66 0.69 16.41 16 12 O -0.59 -23.75 16.24 -3.04 -0.05 -23.80 16 13 C -0.12 -3.14 4.89 29.85 0.15 -3.00 16 14 C -0.10 -3.60 4.50 30.59 0.14 -3.47 16 15 C -0.09 -3.92 5.15 30.59 0.16 -3.76 16 16 C 0.02 0.96 4.97 29.85 0.15 1.10 16 17 C -0.54 -31.64 9.11 25.60 0.23 -31.41 16 18 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 19 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 20 N -0.94 -59.51 13.29 21.45 0.28 -59.23 16 21 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 C 0.10 2.23 6.64 86.85 0.58 2.80 16 26 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 0.56 8.12 -2.39 -0.02 0.54 16 33 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 35 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.04 1.79 8.10 -2.39 -0.02 1.77 16 40 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 41 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 43 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 44 H -0.02 -0.98 8.14 -2.39 -0.02 -0.99 16 45 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.07 1.63 8.04 -2.39 -0.02 1.62 16 47 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -80.75 387.93 3.05 -77.70 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 0.90 Total: 6.64 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 5.58 Total: -15.90 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -2.41 Total: -75.72 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -3.05 Total: -39.83 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -80.75 3.05 -77.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.902 kcal (2) G-P(sol) polarization free energy of solvation -80.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds