Wall clock time and date at job start Tue Mar 31 2020 08:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 C 1.53004 * 109.46786 * 175.14218 * 3 2 1 5 5 C 1.52999 * 109.46721 * 188.30151 * 4 3 2 6 6 C 1.52993 * 109.47325 * 295.14401 * 3 2 1 7 7 N 1.46894 * 109.47491 * 171.43745 * 6 3 2 8 8 C 1.46902 * 111.00148 * 284.15491 * 7 6 3 9 9 C 1.50700 * 109.47261 * 76.68882 * 8 7 6 10 10 H 1.07995 * 119.99771 * 5.07781 * 9 8 7 11 11 C 1.37879 * 119.99962 * 185.07870 * 9 8 7 12 12 N 1.31513 * 119.99789 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99679 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47543 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47115 * 120.00522 * 13 11 9 16 16 H 1.48506 * 109.46823 * 239.99736 * 13 11 9 17 17 C 1.46897 * 111.00408 * 160.19718 * 7 6 3 18 18 C 1.52998 * 109.47322 * 284.61298 * 17 7 6 19 19 O 1.42905 * 110.45731 * 62.12912 * 18 17 7 20 20 C 1.42897 * 113.99801 * 184.87294 * 19 18 17 21 21 C 1.54510 * 110.51460 * 184.73899 * 18 17 7 22 22 C 1.54476 * 104.06514 * 118.64348 * 21 18 17 23 23 O 1.44430 * 104.80491 * 23.98002 * 22 21 18 24 24 C 1.44425 * 105.27297 * 319.49029 * 23 22 21 25 25 H 1.09003 * 109.47194 * 65.35891 * 1 2 3 26 26 H 1.09001 * 109.46812 * 185.35894 * 1 2 3 27 27 H 1.09001 * 109.47241 * 305.35984 * 1 2 3 28 28 H 1.09006 * 109.46839 * 239.99859 * 2 1 3 29 29 H 1.08999 * 109.46655 * 120.00024 * 2 1 3 30 30 H 1.09002 * 109.47327 * 55.14397 * 3 2 1 31 31 H 1.08994 * 109.47429 * 308.30536 * 4 3 2 32 32 H 1.09001 * 109.46885 * 68.30621 * 4 3 2 33 33 H 1.08995 * 109.47229 * 186.13638 * 5 4 3 34 34 H 1.08999 * 109.47716 * 306.14155 * 5 4 3 35 35 H 1.09008 * 109.47138 * 66.14320 * 5 4 3 36 36 H 1.09005 * 109.46905 * 51.43632 * 6 3 2 37 37 H 1.09002 * 109.47434 * 291.44260 * 6 3 2 38 38 H 1.08998 * 109.47071 * 196.68908 * 8 7 6 39 39 H 1.08999 * 109.46654 * 316.69061 * 8 7 6 40 40 H 0.97001 * 119.99562 * 179.97438 * 12 11 9 41 41 H 1.09002 * 109.47106 * 44.60765 * 17 7 6 42 42 H 1.09000 * 109.47722 * 164.61285 * 17 7 6 43 43 H 1.09005 * 109.46660 * 180.02562 * 20 19 18 44 44 H 1.09003 * 109.47734 * 300.00016 * 20 19 18 45 45 H 1.08990 * 109.47427 * 60.00336 * 20 19 18 46 46 H 1.09001 * 110.50780 * 237.29008 * 21 18 17 47 47 H 1.08999 * 110.50800 * 359.85875 * 21 18 17 48 48 H 1.09001 * 110.37024 * 142.80971 * 22 21 18 49 49 H 1.08996 * 110.37466 * 265.03829 * 22 21 18 50 50 H 1.09003 * 110.36897 * 281.68328 * 24 23 22 51 51 H 1.08995 * 110.37608 * 159.34110 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4441 0.1222 5 6 4.0585 2.8774 0.3301 6 6 1.6322 2.1276 -1.3057 7 7 1.9389 3.5618 -1.2228 8 6 0.9575 4.2625 -0.3838 9 6 1.2508 3.9874 1.0685 10 1 2.1296 3.4237 1.3446 11 6 0.3970 4.4554 2.0449 12 7 -0.6734 5.1413 1.7086 13 14 0.7610 4.1150 3.8451 14 1 2.0162 3.3293 3.9565 15 1 0.9167 5.4014 4.5705 16 1 -0.3605 3.3441 4.4397 17 6 2.0119 4.1629 -2.5612 18 6 3.3273 3.7595 -3.2305 19 8 3.3877 2.3417 -3.3990 20 6 4.6330 1.8707 -3.9179 21 6 3.4835 4.4737 -4.5917 22 6 4.7636 5.3222 -4.4257 23 8 5.5135 4.6591 -3.3846 24 6 4.5317 4.2610 -2.4031 25 1 -0.3634 0.4285 -0.9341 26 1 -0.3633 -1.0232 0.0960 27 1 -0.3634 0.5947 0.8381 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6074 1.9809 0.8433 31 1 3.8623 0.8306 0.9726 32 1 4.0031 1.0379 -0.7896 33 1 5.1481 2.8934 0.3082 34 1 3.6697 3.5145 -0.4643 35 1 3.7092 3.2456 1.2948 36 1 0.5626 1.9936 -1.4677 37 1 2.1835 1.6856 -2.1357 38 1 1.0197 5.3346 -0.5703 39 1 -0.0449 3.9091 -0.6254 40 1 -1.2742 5.4702 2.3954 41 1 1.1747 3.8106 -3.1638 42 1 1.9661 5.2485 -2.4750 43 1 4.5983 0.7857 -4.0168 44 1 4.8122 2.3187 -4.8954 45 1 5.4383 2.1484 -3.2380 46 1 3.6092 3.7454 -5.3928 47 1 2.6224 5.1122 -4.7889 48 1 5.3337 5.3347 -5.3547 49 1 4.5091 6.3381 -4.1239 50 1 4.2415 5.1137 -1.7893 51 1 4.9233 3.4584 -1.7784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602464708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:50 Heat of formation + Delta-G solvation = -77.757792 kcal Electronic energy + Delta-G solvation = -28179.233513 eV Core-core repulsion = 24693.459807 eV Total energy + Delta-G solvation = -3485.773706 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 299.225 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.29391 -37.84010 -36.39997 -34.58433 -32.66218 -31.49834 -31.23920 -29.31385 -27.58763 -26.49811 -26.31791 -24.84215 -23.38538 -22.69659 -21.17568 -20.56680 -19.90476 -19.11580 -17.00302 -16.47976 -15.85810 -15.73810 -15.07935 -14.82026 -14.66133 -14.53831 -14.17680 -13.85305 -13.59562 -13.24323 -13.07478 -12.61093 -12.39835 -12.28738 -11.95816 -11.85772 -11.65672 -11.58686 -11.31312 -11.25242 -11.21121 -11.12641 -10.89186 -10.75646 -10.70616 -10.55538 -10.29254 -10.13796 -9.97359 -9.76685 -9.59425 -9.56711 -9.31271 -8.99938 -8.58770 -8.30211 -7.01251 -6.00101 -3.97376 3.31173 3.39946 3.43859 3.87985 4.12841 4.40594 4.57649 4.89480 4.95447 5.07013 5.21935 5.33472 5.35935 5.50980 5.55180 5.60764 5.66386 5.69190 5.76697 5.82545 5.83607 5.88327 5.96941 5.99049 6.04160 6.17308 6.23179 6.24204 6.27557 6.39115 6.43741 6.59468 6.67390 6.69931 6.79369 6.85868 6.87748 6.97235 7.08709 7.13004 7.28896 7.35899 7.41859 7.59720 7.80002 7.96602 8.14423 8.24897 8.57647 9.11203 9.64108 11.10500 Molecular weight = 299.22amu Principal moments of inertia in cm(-1) A = 0.015553 B = 0.005914 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.918247 B = 4733.297375 C = 5414.064161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.110 4.110 4 C -0.094 4.094 5 C -0.184 4.184 6 C 0.066 3.934 7 N -0.524 5.524 8 C 0.189 3.811 9 C -0.508 4.508 10 H 0.093 0.907 11 C 0.054 3.946 12 N -0.899 5.899 13 Si 0.885 3.115 14 H -0.270 1.270 15 H -0.286 1.286 16 H -0.286 1.286 17 C 0.069 3.931 18 C 0.097 3.903 19 O -0.357 6.357 20 C 0.025 3.975 21 C -0.184 4.184 22 C 0.045 3.955 23 O -0.382 6.382 24 C 0.025 3.975 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.122 0.878 31 H 0.033 0.967 32 H 0.041 0.959 33 H 0.014 0.986 34 H 0.124 0.876 35 H 0.057 0.943 36 H 0.021 0.979 37 H 0.084 0.916 38 H 0.020 0.980 39 H -0.003 1.003 40 H 0.258 0.742 41 H 0.035 0.965 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.036 0.964 45 H 0.048 0.952 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.060 0.940 50 H 0.077 0.923 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.928 -4.463 -11.151 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.128 4.128 4 C -0.132 4.132 5 C -0.240 4.240 6 C -0.061 4.061 7 N -0.247 5.247 8 C 0.064 3.936 9 C -0.546 4.546 10 H 0.110 0.890 11 C -0.147 4.147 12 N -0.539 5.539 13 Si 0.713 3.287 14 H -0.194 1.194 15 H -0.212 1.212 16 H -0.212 1.212 17 C -0.060 4.060 18 C 0.057 3.943 19 O -0.276 6.276 20 C -0.071 4.071 21 C -0.223 4.223 22 C -0.032 4.032 23 O -0.302 6.302 24 C -0.052 4.052 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.140 0.860 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.141 0.859 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.102 0.898 38 H 0.038 0.962 39 H 0.015 0.985 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.055 0.945 45 H 0.067 0.933 46 H 0.099 0.901 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.078 0.922 50 H 0.095 0.905 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.295 -4.469 -10.791 14.326 hybrid contribution -0.802 -0.043 0.558 0.978 sum 7.493 -4.512 -10.233 13.462 Atomic orbital electron populations 1.21783 0.96474 1.00022 1.02373 1.21517 0.95511 0.97923 1.00249 1.21765 0.95406 0.94022 1.01571 1.21282 0.95791 0.97367 0.98759 1.22736 0.96742 0.98466 1.06066 1.22345 0.97675 0.88168 0.97925 1.62097 1.51052 1.03164 1.08423 1.19844 0.88315 0.93100 0.92330 1.21742 1.09360 1.33402 0.90083 0.88996 1.24998 0.95243 0.95571 0.98847 1.69974 1.13474 1.37377 1.33053 0.86628 0.78376 0.78007 0.85648 1.19450 1.21203 1.21235 1.22084 0.92829 0.99283 0.91830 1.22969 0.97164 0.81641 0.92553 1.88014 1.34722 1.20550 1.84346 1.22744 0.87476 0.99103 0.97774 1.23564 0.99284 1.00426 0.98988 1.23338 0.91954 0.95932 0.91968 1.89123 1.31208 1.76657 1.33170 1.24353 0.88140 1.01211 0.91450 0.92943 0.94221 0.92201 0.93459 0.93058 0.86015 0.94772 0.94045 0.96672 0.85854 0.92412 0.96058 0.89828 0.96154 0.98470 0.93211 0.94667 0.89969 0.90435 0.94496 0.93335 0.90057 0.89715 0.89600 0.92191 0.90475 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.54 37.16 0.35 -2.11 16 2 C -0.11 -1.88 5.40 -26.73 -0.14 -2.02 16 3 C -0.11 -2.05 1.84 -90.62 -0.17 -2.22 16 4 C -0.09 -1.67 5.38 -26.73 -0.14 -1.81 16 5 C -0.18 -3.42 7.25 37.16 0.27 -3.15 16 6 C 0.07 1.25 4.03 -3.83 -0.02 1.23 16 7 N -0.52 -10.15 1.10 -236.08 -0.26 -10.41 16 8 C 0.19 4.52 4.77 -4.97 -0.02 4.50 16 9 C -0.51 -13.00 6.94 -34.44 -0.24 -13.24 16 10 H 0.09 2.28 2.62 -52.49 -0.14 2.15 16 11 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 12 N -0.90 -25.76 13.29 55.43 0.74 -25.03 16 13 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 17 C 0.07 1.15 4.03 -3.83 -0.02 1.13 16 18 C 0.10 1.40 1.00 -89.05 -0.09 1.31 16 19 O -0.36 -5.32 7.30 -35.23 -0.26 -5.57 16 20 C 0.03 0.31 9.88 101.05 1.00 1.31 16 21 C -0.18 -2.17 5.95 -25.16 -0.15 -2.32 16 22 C 0.05 0.52 7.63 37.93 0.29 0.81 16 23 O -0.38 -5.50 10.81 -35.23 -0.38 -5.88 16 24 C 0.02 0.37 4.17 37.94 0.16 0.53 16 25 H 0.05 0.87 6.65 -51.93 -0.35 0.53 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 30 H 0.12 2.72 4.31 -51.93 -0.22 2.50 16 31 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 32 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.01 0.25 7.93 -51.93 -0.41 -0.17 16 34 H 0.12 2.32 2.21 -51.93 -0.12 2.21 16 35 H 0.06 1.21 6.02 -51.92 -0.31 0.89 16 36 H 0.02 0.43 5.89 -51.93 -0.31 0.13 16 37 H 0.08 1.51 4.70 -51.93 -0.24 1.27 16 38 H 0.02 0.52 7.58 -51.93 -0.39 0.13 16 39 H 0.00 -0.07 7.71 -51.93 -0.40 -0.47 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.04 0.59 8.00 -51.93 -0.42 0.18 16 42 H 0.08 1.34 7.60 -51.93 -0.39 0.95 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.42 6.56 -51.93 -0.34 0.08 16 45 H 0.05 0.63 6.32 -51.93 -0.33 0.30 16 46 H 0.08 0.91 6.66 -51.93 -0.35 0.56 16 47 H 0.08 0.92 7.73 -51.93 -0.40 0.51 16 48 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.08 1.24 7.72 -51.93 -0.40 0.84 16 51 H 0.11 1.80 4.94 -51.93 -0.26 1.55 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -27.53 359.31 -7.49 -35.02 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -8.71 Total: 5.07 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 0.99 Total: -14.68 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.48 Total: -35.44 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.64 Total: -11.45 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.53 -7.49 -35.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602464708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.734 kcal (2) G-P(sol) polarization free energy of solvation -27.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds