Wall clock time and date at job start Tue Mar 31 2020 08:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 C 1.53004 * 109.46786 * 175.14218 * 3 2 1 5 5 C 1.52999 * 109.46721 * 188.30151 * 4 3 2 6 6 C 1.52993 * 109.47325 * 295.14401 * 3 2 1 7 7 N 1.46894 * 109.47491 * 171.43745 * 6 3 2 8 8 C 1.46902 * 111.00148 * 284.15491 * 7 6 3 9 9 C 1.50700 * 109.47261 * 76.68882 * 8 7 6 10 10 H 1.07995 * 119.99771 * 5.07781 * 9 8 7 11 11 C 1.37879 * 119.99962 * 185.07870 * 9 8 7 12 12 N 1.31513 * 119.99789 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99679 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47543 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47115 * 120.00522 * 13 11 9 16 16 H 1.48506 * 109.46823 * 239.99736 * 13 11 9 17 17 C 1.46897 * 111.00408 * 160.19718 * 7 6 3 18 18 C 1.52998 * 109.47322 * 284.61298 * 17 7 6 19 19 O 1.42905 * 110.45731 * 62.12912 * 18 17 7 20 20 C 1.42897 * 113.99801 * 184.87294 * 19 18 17 21 21 C 1.54510 * 110.51460 * 184.73899 * 18 17 7 22 22 C 1.54476 * 104.06514 * 118.64348 * 21 18 17 23 23 O 1.44430 * 104.80491 * 23.98002 * 22 21 18 24 24 C 1.44425 * 105.27297 * 319.49029 * 23 22 21 25 25 H 1.09003 * 109.47194 * 65.35891 * 1 2 3 26 26 H 1.09001 * 109.46812 * 185.35894 * 1 2 3 27 27 H 1.09001 * 109.47241 * 305.35984 * 1 2 3 28 28 H 1.09006 * 109.46839 * 239.99859 * 2 1 3 29 29 H 1.08999 * 109.46655 * 120.00024 * 2 1 3 30 30 H 1.09002 * 109.47327 * 55.14397 * 3 2 1 31 31 H 1.08994 * 109.47429 * 308.30536 * 4 3 2 32 32 H 1.09001 * 109.46885 * 68.30621 * 4 3 2 33 33 H 1.08995 * 109.47229 * 186.13638 * 5 4 3 34 34 H 1.08999 * 109.47716 * 306.14155 * 5 4 3 35 35 H 1.09008 * 109.47138 * 66.14320 * 5 4 3 36 36 H 1.09005 * 109.46905 * 51.43632 * 6 3 2 37 37 H 1.09002 * 109.47434 * 291.44260 * 6 3 2 38 38 H 1.08998 * 109.47071 * 196.68908 * 8 7 6 39 39 H 1.08999 * 109.46654 * 316.69061 * 8 7 6 40 40 H 0.97001 * 119.99562 * 179.97438 * 12 11 9 41 41 H 1.09002 * 109.47106 * 44.60765 * 17 7 6 42 42 H 1.09000 * 109.47722 * 164.61285 * 17 7 6 43 43 H 1.09005 * 109.46660 * 180.02562 * 20 19 18 44 44 H 1.09003 * 109.47734 * 300.00016 * 20 19 18 45 45 H 1.08990 * 109.47427 * 60.00336 * 20 19 18 46 46 H 1.09001 * 110.50780 * 237.29008 * 21 18 17 47 47 H 1.08999 * 110.50800 * 359.85875 * 21 18 17 48 48 H 1.09001 * 110.37024 * 142.80971 * 22 21 18 49 49 H 1.08996 * 110.37466 * 265.03829 * 22 21 18 50 50 H 1.09003 * 110.36897 * 281.68328 * 24 23 22 51 51 H 1.08995 * 110.37608 * 159.34110 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4441 0.1222 5 6 4.0585 2.8774 0.3301 6 6 1.6322 2.1276 -1.3057 7 7 1.9389 3.5618 -1.2228 8 6 0.9575 4.2625 -0.3838 9 6 1.2508 3.9874 1.0685 10 1 2.1296 3.4237 1.3446 11 6 0.3970 4.4554 2.0449 12 7 -0.6734 5.1413 1.7086 13 14 0.7610 4.1150 3.8451 14 1 2.0162 3.3293 3.9565 15 1 0.9167 5.4014 4.5705 16 1 -0.3605 3.3441 4.4397 17 6 2.0119 4.1629 -2.5612 18 6 3.3273 3.7595 -3.2305 19 8 3.3877 2.3417 -3.3990 20 6 4.6330 1.8707 -3.9179 21 6 3.4835 4.4737 -4.5917 22 6 4.7636 5.3222 -4.4257 23 8 5.5135 4.6591 -3.3846 24 6 4.5317 4.2610 -2.4031 25 1 -0.3634 0.4285 -0.9341 26 1 -0.3633 -1.0232 0.0960 27 1 -0.3634 0.5947 0.8381 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6074 1.9809 0.8433 31 1 3.8623 0.8306 0.9726 32 1 4.0031 1.0379 -0.7896 33 1 5.1481 2.8934 0.3082 34 1 3.6697 3.5145 -0.4643 35 1 3.7092 3.2456 1.2948 36 1 0.5626 1.9936 -1.4677 37 1 2.1835 1.6856 -2.1357 38 1 1.0197 5.3346 -0.5703 39 1 -0.0449 3.9091 -0.6254 40 1 -1.2742 5.4702 2.3954 41 1 1.1747 3.8106 -3.1638 42 1 1.9661 5.2485 -2.4750 43 1 4.5983 0.7857 -4.0168 44 1 4.8122 2.3187 -4.8954 45 1 5.4383 2.1484 -3.2380 46 1 3.6092 3.7454 -5.3928 47 1 2.6224 5.1122 -4.7889 48 1 5.3337 5.3347 -5.3547 49 1 4.5091 6.3381 -4.1239 50 1 4.2415 5.1137 -1.7893 51 1 4.9233 3.4584 -1.7784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602464708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:49 Heat of formation + Delta-G solvation = -92.257464 kcal Electronic energy + Delta-G solvation = -28179.862266 eV Core-core repulsion = 24693.459807 eV Total energy + Delta-G solvation = -3486.402459 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 299.225 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.45485 -39.32622 -37.51536 -36.08391 -34.61233 -32.83946 -32.55119 -30.50569 -29.34107 -27.81576 -27.56801 -26.23880 -25.10073 -23.80134 -22.56426 -22.19788 -21.07196 -20.68570 -18.31628 -18.08776 -17.21181 -17.00045 -16.51030 -16.18107 -16.12469 -15.85249 -15.56272 -15.05126 -14.93124 -14.70489 -14.56249 -14.28825 -13.88618 -13.45608 -13.38937 -13.21730 -13.17889 -12.91556 -12.83701 -12.75883 -12.58040 -12.40263 -12.35724 -12.26235 -12.13482 -12.04421 -11.94253 -11.65700 -11.39115 -11.17331 -11.09469 -10.94992 -10.71851 -10.53339 -10.29289 -10.11970 -8.67297 -8.08592 -6.10360 1.39486 1.42792 1.53324 2.44733 2.77443 3.06730 3.23652 3.24827 3.76599 3.79212 3.98372 4.12415 4.15359 4.25853 4.32949 4.42198 4.50281 4.56290 4.59954 4.65169 4.68689 4.74897 4.80013 4.81601 4.82480 4.86993 4.92708 4.99063 5.00801 5.04290 5.10472 5.12542 5.19549 5.24327 5.33899 5.36396 5.40460 5.46773 5.49275 5.57572 5.68419 5.82700 5.87984 6.04667 6.25674 6.27974 6.33266 6.51082 6.74957 7.06882 7.54615 9.02141 Molecular weight = 299.22amu Principal moments of inertia in cm(-1) A = 0.015553 B = 0.005914 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.918247 B = 4733.297375 C = 5414.064161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.110 4.110 4 C -0.088 4.088 5 C -0.181 4.181 6 C 0.073 3.927 7 N -0.517 5.517 8 C 0.206 3.794 9 C -0.501 4.501 10 H 0.102 0.898 11 C 0.001 3.999 12 N -0.939 5.939 13 Si 0.943 3.057 14 H -0.261 1.261 15 H -0.285 1.285 16 H -0.286 1.286 17 C 0.066 3.934 18 C 0.102 3.898 19 O -0.374 6.374 20 C 0.024 3.976 21 C -0.177 4.177 22 C 0.041 3.959 23 O -0.392 6.392 24 C 0.031 3.969 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.031 0.969 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.031 0.969 34 H 0.120 0.880 35 H 0.029 0.971 36 H 0.001 0.999 37 H 0.101 0.899 38 H -0.001 1.001 39 H -0.038 1.038 40 H 0.257 0.743 41 H 0.033 0.967 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.050 0.950 45 H 0.041 0.959 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.112 0.888 49 H 0.065 0.935 50 H 0.060 0.940 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.850 -5.933 -12.438 16.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.128 4.128 4 C -0.126 4.126 5 C -0.238 4.238 6 C -0.054 4.054 7 N -0.240 5.240 8 C 0.080 3.920 9 C -0.539 4.539 10 H 0.119 0.881 11 C -0.196 4.196 12 N -0.581 5.581 13 Si 0.769 3.231 14 H -0.185 1.185 15 H -0.211 1.211 16 H -0.213 1.213 17 C -0.063 4.063 18 C 0.062 3.938 19 O -0.294 6.294 20 C -0.071 4.071 21 C -0.215 4.215 22 C -0.035 4.035 23 O -0.311 6.311 24 C -0.045 4.045 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.138 0.862 35 H 0.048 0.952 36 H 0.019 0.981 37 H 0.119 0.881 38 H 0.017 0.983 39 H -0.020 1.020 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.099 0.901 43 H 0.113 0.887 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.112 0.888 47 H 0.112 0.888 48 H 0.130 0.870 49 H 0.083 0.917 50 H 0.078 0.922 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.243 -5.949 -12.091 16.926 hybrid contribution -1.360 0.407 0.855 1.657 sum 8.883 -5.542 -11.236 15.358 Atomic orbital electron populations 1.21743 0.96809 1.01030 1.00754 1.21482 0.95159 0.96406 1.01682 1.21656 0.96265 0.95191 0.99700 1.21227 0.94684 0.96793 0.99859 1.22673 0.97787 0.99125 1.04218 1.22344 0.96655 0.87666 0.98760 1.62071 1.48778 1.03403 1.09722 1.19496 0.87615 0.92069 0.92863 1.22135 1.09052 1.31919 0.90834 0.88060 1.25740 0.95315 0.95850 1.02707 1.70102 1.14721 1.39197 1.34071 0.85716 0.78362 0.77770 0.81229 1.18458 1.21145 1.21269 1.22169 0.94542 0.99196 0.90405 1.22782 0.95073 0.82120 0.93827 1.87927 1.36186 1.20449 1.84803 1.22875 0.86021 1.00194 0.98051 1.23530 0.99933 1.00607 0.97434 1.23556 0.91887 0.95808 0.92240 1.89113 1.31443 1.77000 1.33590 1.24133 0.88529 1.00233 0.91617 0.93726 0.91582 0.94944 0.91468 0.92009 0.89835 0.93939 0.92420 0.95032 0.86245 0.95173 0.98075 0.88129 0.98268 1.02033 0.93440 0.94835 0.90124 0.88703 0.93186 0.94045 0.88751 0.88790 0.86983 0.91676 0.92164 0.87816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.54 71.98 0.69 -4.04 16 2 C -0.11 -3.41 5.40 30.60 0.17 -3.25 16 3 C -0.11 -4.05 1.84 -10.79 -0.02 -4.07 16 4 C -0.09 -2.95 5.38 30.60 0.16 -2.79 16 5 C -0.18 -6.61 7.25 71.98 0.52 -6.08 16 6 C 0.07 2.73 4.03 86.30 0.35 3.08 16 7 N -0.52 -20.37 1.10 -900.82 -0.99 -21.37 16 8 C 0.21 10.30 4.77 85.56 0.41 10.71 16 9 C -0.50 -26.49 6.94 25.60 0.18 -26.31 16 10 H 0.10 5.13 2.62 -2.91 -0.01 5.13 16 11 C 0.00 0.04 5.46 84.66 0.46 0.50 16 12 N -0.94 -55.88 13.29 21.45 0.28 -55.60 16 13 Si 0.94 44.22 29.54 68.60 2.03 46.25 16 14 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 15 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 16 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 17 C 0.07 2.19 4.03 86.30 0.35 2.53 16 18 C 0.10 2.80 1.00 -9.78 -0.01 2.79 16 19 O -0.37 -10.25 7.30 -148.98 -1.09 -11.33 16 20 C 0.02 0.53 9.88 113.37 1.12 1.65 16 21 C -0.18 -3.70 5.95 31.61 0.19 -3.51 16 22 C 0.04 0.83 7.63 72.48 0.55 1.39 16 23 O -0.39 -10.44 10.81 -148.98 -1.61 -12.05 16 24 C 0.03 0.91 4.17 72.49 0.30 1.21 16 25 H 0.04 1.48 6.65 -2.39 -0.02 1.47 16 26 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 30 H 0.08 3.78 4.31 -2.39 -0.01 3.77 16 31 H 0.04 1.35 8.12 -2.39 -0.02 1.33 16 32 H 0.06 1.76 8.08 -2.39 -0.02 1.74 16 33 H 0.03 1.01 7.93 -2.39 -0.02 0.99 16 34 H 0.12 4.46 2.21 -2.39 -0.01 4.46 16 35 H 0.03 1.24 6.02 -2.38 -0.01 1.23 16 36 H 0.00 0.04 5.89 -2.38 -0.01 0.03 16 37 H 0.10 3.48 4.70 -2.39 -0.01 3.47 16 38 H 0.00 -0.04 7.58 -2.39 -0.02 -0.06 16 39 H -0.04 -2.16 7.71 -2.39 -0.02 -2.18 16 40 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.03 1.13 8.00 -2.39 -0.02 1.11 16 42 H 0.08 2.69 7.60 -2.39 -0.02 2.67 16 43 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.05 0.95 6.56 -2.39 -0.02 0.94 16 45 H 0.04 0.96 6.32 -2.39 -0.02 0.95 16 46 H 0.09 1.76 6.66 -2.39 -0.02 1.75 16 47 H 0.09 1.81 7.73 -2.39 -0.02 1.79 16 48 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.06 1.93 7.72 -2.39 -0.02 1.91 16 51 H 0.10 3.18 4.94 -2.39 -0.01 3.17 16 Total: -1.00 -60.80 359.31 4.95 -55.85 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.91 Total: 24.45 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 5.42 Total: -26.20 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -0.71 Total: -76.96 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -2.70 Total: -23.38 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -60.80 4.95 -55.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602464708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.406 kcal (2) G-P(sol) polarization free energy of solvation -60.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds