Wall clock time and date at job start Tue Mar 31 2020 08:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86801 * 120.00080 * 2 1 4 4 H 1.48498 * 109.47124 * 239.99922 * 3 2 1 5 5 H 1.48504 * 109.47295 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47308 * 119.99663 * 3 2 1 7 7 C 1.38756 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99936 * 179.97438 * 7 2 1 9 9 O 1.34920 * 119.99766 * 0.28468 * 7 2 1 10 10 C 1.34313 * 116.99765 * 179.71931 * 9 7 2 11 11 O 1.21205 * 119.99905 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99547 * 179.97438 * 10 9 7 13 13 C 1.50697 * 115.55088 * 65.52419 * 12 10 9 14 14 C 1.38327 * 120.01587 * 89.25031 * 13 12 10 15 15 Cl 1.73598 * 120.00457 * 359.97438 * 14 13 12 16 16 C 1.38362 * 119.98976 * 179.69710 * 14 13 12 17 17 C 1.38219 * 120.00796 * 0.59358 * 16 14 13 18 18 C 1.38227 * 120.02886 * 359.68288 * 17 16 14 19 19 C 1.38328 * 120.00989 * 269.51833 * 13 12 10 20 20 Cl 1.73598 * 120.00824 * 359.97438 * 19 13 12 21 21 C 1.53004 * 117.49675 * 279.84770 * 12 10 9 22 22 C 1.53001 * 117.49474 * 211.19118 * 12 10 9 23 23 H 0.97006 * 120.00161 * 0.02562 * 1 2 3 24 24 H 1.07997 * 119.99791 * 180.27210 * 16 14 13 25 25 H 1.07999 * 119.98563 * 179.69897 * 17 16 14 26 26 H 1.08001 * 119.99093 * 180.02562 * 18 17 16 27 27 H 1.09002 * 117.49953 * 0.02562 * 21 12 10 28 28 H 1.09002 * 117.49237 * 145.02522 * 21 12 10 29 29 H 1.09005 * 117.49865 * 214.97765 * 22 12 10 30 30 H 1.09001 * 117.50149 * 359.97438 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1021 1.6964 -1.2125 5 1 1.2834 2.7465 -0.0006 6 1 3.1021 1.6965 1.2126 7 6 2.0082 -1.2016 0.0005 8 1 3.0881 -1.2016 0.0001 9 8 1.3336 -2.3701 -0.0047 10 6 2.0651 -3.4965 -0.0098 11 8 3.2755 -3.4330 -0.0099 12 6 1.3809 -4.8392 -0.0152 13 6 0.5835 -5.1573 -1.2538 14 6 1.1923 -5.7823 -2.3272 15 17 2.8755 -6.1998 -2.2481 16 6 0.4582 -6.0797 -3.4616 17 6 -0.8804 -5.7415 -3.5272 18 6 -1.4879 -5.1118 -2.4571 19 6 -0.7563 -4.8194 -1.3198 20 17 -1.5197 -4.0294 0.0243 21 6 0.8538 -5.3689 1.3199 22 6 2.0948 -5.9986 0.6825 23 1 -0.4851 0.8401 -0.0004 24 1 0.9323 -6.5716 -4.2980 25 1 -1.4518 -5.9695 -4.4148 26 1 -2.5340 -4.8481 -2.5089 27 1 1.0015 -4.7460 2.2021 28 1 -0.0697 -5.9478 1.3023 29 1 1.9874 -6.9917 0.2460 30 1 3.0596 -5.7904 1.1451 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759440310.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:59 Heat of formation + Delta-G solvation = -35.863999 kcal Electronic energy + Delta-G solvation = -19988.033256 eV Core-core repulsion = 16608.610396 eV Total energy + Delta-G solvation = -3379.422860 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 300.011 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.01315 -38.65682 -36.52152 -36.40137 -35.84742 -34.71360 -32.05685 -30.62260 -30.47428 -25.92477 -24.11553 -23.04114 -22.14923 -21.70970 -19.21960 -17.68289 -17.39861 -16.42726 -15.65176 -15.36519 -14.96052 -14.58329 -14.31732 -14.12811 -13.82402 -13.51752 -13.12940 -12.39400 -12.03880 -11.78168 -11.72641 -11.51690 -11.18525 -11.16100 -11.03519 -10.75909 -10.51566 -10.44073 -10.35455 -10.07312 -9.89576 -9.61523 -9.18952 -8.54392 -8.50094 -8.45535 -6.33577 -4.00736 1.11272 1.14656 2.15686 2.62007 3.14634 3.21517 3.25036 3.42061 3.59949 3.86610 4.09617 4.51519 4.62197 4.86330 5.00113 5.15936 5.21378 5.33751 5.44979 5.48722 5.54828 5.83979 5.90504 6.13540 6.20464 6.24700 6.25891 6.42828 6.62344 6.87951 7.45166 8.01413 8.77742 9.14286 9.96074 10.83088 Molecular weight = 300.01amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.006589 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.314616 B = 4248.469005 C = 4782.438035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.046 3.954 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.383 4.383 8 H 0.093 0.907 9 O -0.195 6.195 10 C 0.436 3.564 11 O -0.544 6.544 12 C -0.083 4.083 13 C -0.028 4.028 14 C -0.014 4.014 15 Cl -0.048 7.048 16 C -0.117 4.117 17 C -0.099 4.099 18 C -0.113 4.113 19 C -0.002 4.002 20 Cl -0.026 7.026 21 C -0.144 4.144 22 C -0.136 4.136 23 H 0.268 0.732 24 H 0.137 0.863 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 -13.145 -4.248 14.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.159 4.159 3 Si 0.763 3.237 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.460 4.460 8 H 0.110 0.890 9 O -0.101 6.101 10 C 0.281 3.719 11 O -0.441 6.441 12 C -0.084 4.084 13 C -0.030 4.030 14 C -0.041 4.041 15 Cl -0.019 7.019 16 C -0.136 4.136 17 C -0.117 4.117 18 C -0.132 4.132 19 C -0.030 4.030 20 Cl 0.003 6.997 21 C -0.182 4.182 22 C -0.172 4.172 23 H 0.078 0.922 24 H 0.155 0.845 25 H 0.156 0.844 26 H 0.157 0.843 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.939 -12.901 -4.109 14.101 hybrid contribution 0.491 0.989 -0.057 1.105 sum -3.448 -11.912 -4.166 13.082 Atomic orbital electron populations 1.70005 1.05775 1.27447 1.46017 1.25261 0.95764 0.98555 0.96313 0.85826 0.78715 0.79827 0.79289 1.19598 1.20424 1.19558 1.21171 0.92280 0.80023 1.52498 0.88983 1.83916 1.38690 1.12710 1.74762 1.21573 0.85745 0.85460 0.79089 1.90550 1.15198 1.87470 1.50856 1.19226 1.03573 0.93175 0.92425 1.18551 0.91780 0.98465 0.94186 1.20701 0.86679 1.01477 0.95248 1.98386 1.13601 1.91647 1.98287 1.21056 0.94279 1.01425 0.96812 1.21014 0.94116 0.98190 0.98392 1.21144 1.00774 0.99368 0.91892 1.20774 0.92335 0.97971 0.91877 1.98432 1.80219 1.77567 1.43466 1.23150 0.98142 1.02287 0.94573 1.23104 0.97660 0.95236 1.01249 0.92233 0.84517 0.84384 0.84329 0.87695 0.88019 0.88135 0.87427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.91 13.67 55.48 0.76 -24.15 16 2 C 0.05 1.29 5.49 -17.53 -0.10 1.20 16 3 Si 0.94 21.64 29.55 -169.99 -5.02 16.62 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.38 -11.48 9.65 30.92 0.30 -11.18 16 8 H 0.09 2.79 6.86 -52.49 -0.36 2.43 16 9 O -0.19 -5.61 9.75 -20.71 -0.20 -5.81 16 10 C 0.44 11.16 7.15 36.01 0.26 11.42 16 11 O -0.54 -15.02 15.93 -19.05 -0.30 -15.33 16 12 C -0.08 -1.64 1.02 -156.81 -0.16 -1.80 16 13 C -0.03 -0.51 4.99 -104.56 -0.52 -1.03 16 14 C -0.01 -0.23 6.27 -39.50 -0.25 -0.47 16 15 Cl -0.05 -0.78 26.42 -51.86 -1.37 -2.15 16 16 C -0.12 -1.52 9.83 -39.54 -0.39 -1.91 16 17 C -0.10 -1.17 10.04 -39.59 -0.40 -1.56 16 18 C -0.11 -1.56 9.83 -39.54 -0.39 -1.95 16 19 C 0.00 -0.04 6.26 -39.50 -0.25 -0.29 16 20 Cl -0.03 -0.48 26.28 -51.86 -1.36 -1.85 16 21 C -0.14 -2.40 8.39 -26.69 -0.22 -2.62 16 22 C -0.14 -2.21 8.25 -26.69 -0.22 -2.43 16 23 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 25 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 26 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 28 H 0.10 1.47 7.65 -51.93 -0.40 1.07 16 29 H 0.10 1.41 7.76 -51.93 -0.40 1.00 16 30 H 0.11 1.82 8.00 -51.93 -0.42 1.41 16 LS Contribution 300.98 15.07 4.54 4.54 Total: -1.00 -33.26 300.98 -7.71 -40.97 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -2.40 Total: -0.21 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -2.34 Total: -12.63 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.76 Total: -24.15 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.51 Total: -21.13 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -2.73 Total: -4.00 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.26 -7.71 -40.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759440310.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.102 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds