Wall clock time and date at job start Tue Mar 31 2020 07:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46753 * 2 1 4 4 C 1.46498 * 119.99981 * 95.15380 * 3 2 1 5 5 C 1.50692 * 109.47390 * 94.96982 * 4 3 2 6 6 H 1.08000 * 120.00269 * 0.02562 * 5 4 3 7 7 C 1.37884 * 120.00200 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99443 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00154 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47420 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47250 * 120.00147 * 9 7 5 12 12 H 1.48504 * 109.47057 * 239.99704 * 9 7 5 13 13 C 1.34780 * 119.99751 * 275.14746 * 3 2 1 14 14 O 1.21696 * 120.00051 * 4.90960 * 13 3 2 15 15 C 1.46667 * 119.99746 * 184.91273 * 13 3 2 16 16 C 1.37891 * 126.22308 * 186.70849 * 15 13 3 17 17 C 1.39878 * 107.08994 * 179.84937 * 16 15 13 18 18 Br 1.89098 * 126.07326 * 180.16328 * 17 16 15 19 19 C 1.35506 * 107.85221 * 0.41647 * 17 16 15 20 20 N 1.35593 * 108.85878 * 359.74357 * 19 17 16 21 21 H 0.97003 * 125.67809 * 179.97438 * 20 19 17 22 22 H 1.09005 * 109.46866 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47368 * 299.99745 * 1 2 3 24 24 H 1.08994 * 109.47683 * 60.00111 * 1 2 3 25 25 H 1.09003 * 109.47145 * 119.99684 * 2 1 3 26 26 H 1.08993 * 109.47199 * 239.99781 * 2 1 3 27 27 H 1.09007 * 109.46443 * 214.97312 * 4 3 2 28 28 H 1.09001 * 109.47180 * 334.96564 * 4 3 2 29 29 H 0.96998 * 119.99537 * 180.02562 * 8 7 5 30 30 H 1.07994 * 126.45159 * 0.02562 * 16 15 13 31 31 H 1.08004 * 125.56572 * 179.75840 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3698 2.0339 1.2636 5 6 3.8497 1.8903 1.5085 6 1 4.4669 1.3657 0.7941 7 6 4.4162 2.4295 2.6440 8 7 3.6649 3.0696 3.5132 9 14 6.2508 2.2520 2.9472 10 1 6.8669 1.4965 1.8270 11 1 6.8705 3.5986 3.0353 12 1 6.4737 1.5204 4.2202 13 6 2.1441 2.0515 -1.1626 14 8 1.7687 1.5423 -2.2022 15 6 2.7335 3.3945 -1.1746 16 6 2.8058 4.2429 -2.2593 17 6 3.4389 5.4122 -1.8250 18 35 3.8102 6.9356 -2.8819 19 6 3.7439 5.2570 -0.5139 20 7 3.3204 4.0349 -0.1070 21 1 3.4155 3.6721 0.7876 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 2.1112 3.0915 1.2104 28 1 1.8193 1.5659 2.0797 29 1 4.0634 3.4492 4.3119 30 1 2.4398 4.0433 -3.2555 31 1 4.2427 5.9876 0.1058 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037846331.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:09 Heat of formation + Delta-G solvation = 15.278038 kcal Electronic energy + Delta-G solvation = -17128.269893 eV Core-core repulsion = 14264.053713 eV Total energy + Delta-G solvation = -2864.216180 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 300.021 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.90364 -38.53548 -35.56948 -33.34764 -31.79861 -30.66098 -29.50601 -27.90890 -27.38681 -23.56562 -23.35340 -20.98184 -19.57602 -19.35764 -17.19653 -16.71794 -15.72632 -15.41840 -14.78394 -14.46665 -13.49101 -13.42966 -13.42507 -12.93014 -12.63649 -12.33142 -12.23414 -11.99948 -11.73880 -11.46966 -11.20801 -11.01923 -10.65393 -10.62152 -10.37006 -10.09455 -9.86742 -9.37065 -9.00957 -8.31060 -8.01406 -7.66369 -6.62319 -4.77224 2.10903 2.21138 2.91461 2.98407 3.09318 3.14401 3.68123 3.96638 4.00473 4.18864 4.68522 5.27591 5.53137 5.65227 5.71957 5.78347 5.80589 6.14453 6.14817 6.33562 6.37528 6.39563 6.56999 6.76940 7.01860 7.18999 7.33122 7.43120 7.54450 8.06571 8.19995 8.41645 8.82770 8.95669 10.39326 Molecular weight = 300.02amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.006372 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.077778 B = 4393.012337 C = 6000.287244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.119 3.881 3 N -0.597 5.597 4 C 0.217 3.783 5 C -0.563 4.563 6 H 0.073 0.927 7 C 0.065 3.935 8 N -0.878 5.878 9 Si 0.899 3.101 10 H -0.267 1.267 11 H -0.276 1.276 12 H -0.276 1.276 13 C 0.588 3.412 14 O -0.558 6.558 15 C -0.028 4.028 16 C -0.105 4.105 17 C -0.190 4.190 18 Br -0.052 7.052 19 C 0.044 3.956 20 N -0.498 5.498 21 H 0.454 0.546 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.274 0.726 30 H 0.146 0.854 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 4.633 -5.491 7.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.004 4.004 3 N -0.327 5.327 4 C 0.096 3.904 5 C -0.602 4.602 6 H 0.091 0.909 7 C -0.141 4.141 8 N -0.514 5.514 9 Si 0.725 3.275 10 H -0.191 1.191 11 H -0.202 1.202 12 H -0.201 1.201 13 C 0.378 3.622 14 O -0.439 6.439 15 C -0.145 4.145 16 C -0.133 4.133 17 C -0.276 4.276 18 Br 0.031 6.969 19 C -0.100 4.100 20 N -0.108 5.108 21 H 0.315 0.685 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.164 0.836 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.829 4.838 -5.946 7.710 hybrid contribution 1.028 -0.429 1.098 1.564 sum 0.199 4.409 -4.848 6.556 Atomic orbital electron populations 1.22127 0.96625 1.01416 1.02209 1.21273 0.93668 0.82883 1.02557 1.48088 1.63320 1.13694 1.07642 1.19771 0.96102 0.93461 0.81026 1.21736 0.93102 1.37951 1.07375 0.90914 1.25139 0.99643 0.94383 0.94980 1.69941 1.36185 1.34176 1.11076 0.86368 0.83488 0.78679 0.78948 1.19103 1.20194 1.20144 1.17032 0.78082 0.83544 0.83572 1.90731 1.51962 1.68868 1.32297 1.20353 1.09533 0.95815 0.88815 1.20942 1.02675 0.91494 0.98170 1.20802 1.16146 0.95744 0.94907 1.96459 1.94922 1.36198 1.69324 1.21907 1.03375 0.90005 0.94709 1.44567 1.39724 1.11880 1.14663 0.68462 0.92258 0.92724 0.92304 0.90259 0.91060 0.94621 0.93238 0.91571 0.83586 0.81313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.20 37.16 0.38 -2.18 16 2 C 0.12 2.12 6.02 -4.04 -0.02 2.09 16 3 N -0.60 -12.39 2.48 -176.61 -0.44 -12.83 16 4 C 0.22 4.81 4.68 -5.20 -0.02 4.78 16 5 C -0.56 -13.22 7.11 -34.44 -0.24 -13.47 16 6 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 7 C 0.07 1.53 5.01 -17.82 -0.09 1.44 16 8 N -0.88 -21.27 13.29 55.43 0.74 -20.53 16 9 Si 0.90 18.71 29.54 -169.99 -5.02 13.69 16 10 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 11 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 13 C 0.59 12.89 7.56 -12.86 -0.10 12.79 16 14 O -0.56 -12.94 16.55 5.19 0.09 -12.85 16 15 C -0.03 -0.60 6.61 -81.98 -0.54 -1.14 16 16 C -0.11 -2.03 10.64 -39.10 -0.42 -2.44 16 17 C -0.19 -3.37 6.53 -39.94 -0.26 -3.63 16 18 Br -0.05 -0.77 34.08 -68.01 -2.32 -3.09 16 19 C 0.04 0.79 11.86 -16.87 -0.20 0.59 16 20 N -0.50 -10.16 4.77 -9.36 -0.04 -10.20 16 21 H 0.45 9.82 3.14 -40.82 -0.13 9.69 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 25 H 0.08 1.33 8.03 -51.93 -0.42 0.92 16 26 H 0.07 1.27 7.66 -51.93 -0.40 0.87 16 27 H 0.04 0.83 5.42 -51.93 -0.28 0.54 16 28 H 0.05 1.13 8.03 -51.93 -0.42 0.71 16 29 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 30 H 0.15 2.65 8.06 -52.49 -0.42 2.23 16 31 H 0.17 2.56 8.06 -52.48 -0.42 2.14 16 LS Contribution 287.13 15.07 4.33 4.33 Total: -1.00 -25.27 287.13 -7.49 -32.76 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -3.30 Total: 9.88 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.52 Total: -1.15 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.25 Total: -43.57 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -2.32 Total: -3.09 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -25.27 -7.49 -32.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037846331.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.034 kcal (2) G-P(sol) polarization free energy of solvation -25.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds