Wall clock time and date at job start Tue Mar 31 2020 07:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46753 * 2 1 4 4 C 1.46498 * 119.99981 * 95.15380 * 3 2 1 5 5 C 1.50692 * 109.47390 * 94.96982 * 4 3 2 6 6 H 1.08000 * 120.00269 * 0.02562 * 5 4 3 7 7 C 1.37884 * 120.00200 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99443 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00154 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47420 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47250 * 120.00147 * 9 7 5 12 12 H 1.48504 * 109.47057 * 239.99704 * 9 7 5 13 13 C 1.34780 * 119.99751 * 275.14746 * 3 2 1 14 14 O 1.21696 * 120.00051 * 4.90960 * 13 3 2 15 15 C 1.46667 * 119.99746 * 184.91273 * 13 3 2 16 16 C 1.37891 * 126.22308 * 186.70849 * 15 13 3 17 17 C 1.39878 * 107.08994 * 179.84937 * 16 15 13 18 18 Br 1.89098 * 126.07326 * 180.16328 * 17 16 15 19 19 C 1.35506 * 107.85221 * 0.41647 * 17 16 15 20 20 N 1.35593 * 108.85878 * 359.74357 * 19 17 16 21 21 H 0.97003 * 125.67809 * 179.97438 * 20 19 17 22 22 H 1.09005 * 109.46866 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47368 * 299.99745 * 1 2 3 24 24 H 1.08994 * 109.47683 * 60.00111 * 1 2 3 25 25 H 1.09003 * 109.47145 * 119.99684 * 2 1 3 26 26 H 1.08993 * 109.47199 * 239.99781 * 2 1 3 27 27 H 1.09007 * 109.46443 * 214.97312 * 4 3 2 28 28 H 1.09001 * 109.47180 * 334.96564 * 4 3 2 29 29 H 0.96998 * 119.99537 * 180.02562 * 8 7 5 30 30 H 1.07994 * 126.45159 * 0.02562 * 16 15 13 31 31 H 1.08004 * 125.56572 * 179.75840 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3698 2.0339 1.2636 5 6 3.8497 1.8903 1.5085 6 1 4.4669 1.3657 0.7941 7 6 4.4162 2.4295 2.6440 8 7 3.6649 3.0696 3.5132 9 14 6.2508 2.2520 2.9472 10 1 6.8669 1.4965 1.8270 11 1 6.8705 3.5986 3.0353 12 1 6.4737 1.5204 4.2202 13 6 2.1441 2.0515 -1.1626 14 8 1.7687 1.5423 -2.2022 15 6 2.7335 3.3945 -1.1746 16 6 2.8058 4.2429 -2.2593 17 6 3.4389 5.4122 -1.8250 18 35 3.8102 6.9356 -2.8819 19 6 3.7439 5.2570 -0.5139 20 7 3.3204 4.0349 -0.1070 21 1 3.4155 3.6721 0.7876 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 2.1112 3.0915 1.2104 28 1 1.8193 1.5659 2.0797 29 1 4.0634 3.4492 4.3119 30 1 2.4398 4.0433 -3.2555 31 1 4.2427 5.9876 0.1058 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037846331.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:09 Heat of formation + Delta-G solvation = 2.740323 kcal Electronic energy + Delta-G solvation = -17128.813569 eV Core-core repulsion = 14264.053713 eV Total energy + Delta-G solvation = -2864.759856 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 300.021 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.43570 -40.15735 -37.26475 -35.06695 -33.25759 -32.11641 -31.00508 -29.38691 -29.07959 -25.27077 -24.88102 -22.49580 -21.05652 -20.91166 -18.94407 -18.42601 -17.34188 -16.99002 -16.48486 -16.09402 -15.01997 -14.93868 -14.87654 -14.48377 -14.36717 -13.76207 -13.65832 -13.47590 -13.25556 -13.11019 -12.77578 -12.65966 -12.31196 -11.95511 -11.86276 -11.85087 -11.21381 -10.98919 -10.79604 -9.85095 -9.61033 -9.15564 -8.42135 -6.62991 0.52635 0.84272 1.33436 1.40728 1.48090 1.49795 2.10201 2.27828 2.36178 2.61772 2.88021 3.71601 4.14750 4.22818 4.29843 4.35560 4.47378 4.61547 4.66864 4.86027 4.90922 4.96284 5.00669 5.27953 5.47682 5.54369 5.64358 5.74056 5.88559 6.34211 6.60347 6.62139 7.08634 7.20174 8.59316 Molecular weight = 300.02amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.006372 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.077778 B = 4393.012337 C = 6000.287244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.111 3.889 3 N -0.599 5.599 4 C 0.230 3.770 5 C -0.567 4.567 6 H 0.056 0.944 7 C 0.038 3.962 8 N -0.898 5.898 9 Si 0.950 3.050 10 H -0.275 1.275 11 H -0.268 1.268 12 H -0.273 1.273 13 C 0.581 3.419 14 O -0.580 6.580 15 C -0.060 4.060 16 C -0.103 4.103 17 C -0.194 4.194 18 Br -0.020 7.020 19 C 0.049 3.951 20 N -0.511 5.511 21 H 0.448 0.552 22 H 0.091 0.909 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.029 0.971 28 H 0.040 0.960 29 H 0.279 0.721 30 H 0.153 0.847 31 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 5.308 -5.416 7.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.011 4.011 3 N -0.328 5.328 4 C 0.109 3.891 5 C -0.605 4.605 6 H 0.074 0.926 7 C -0.167 4.167 8 N -0.534 5.534 9 Si 0.774 3.226 10 H -0.200 1.200 11 H -0.193 1.193 12 H -0.199 1.199 13 C 0.371 3.629 14 O -0.462 6.462 15 C -0.176 4.176 16 C -0.130 4.130 17 C -0.280 4.280 18 Br 0.064 6.936 19 C -0.095 4.095 20 N -0.120 5.120 21 H 0.308 0.692 22 H 0.109 0.891 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.106 0.894 26 H 0.087 0.913 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.170 0.830 31 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -0.254 5.512 -5.874 8.059 hybrid contribution 0.851 -0.576 1.030 1.455 sum 0.597 4.935 -4.844 6.941 Atomic orbital electron populations 1.22034 0.94654 1.03260 1.01333 1.21506 0.95324 0.81478 1.02805 1.48165 1.63072 1.14645 1.06946 1.19535 0.95372 0.93058 0.81184 1.21673 0.93499 1.38060 1.07281 0.92553 1.25621 1.02462 0.93968 0.94654 1.69986 1.37433 1.34572 1.11434 0.85604 0.79849 0.78762 0.78357 1.20015 1.19318 1.19851 1.17262 0.77999 0.84073 0.83521 1.90698 1.53172 1.69554 1.32793 1.20412 1.11312 0.96085 0.89793 1.21139 1.02099 0.91775 0.98024 1.20991 1.15338 0.96426 0.95223 1.96486 1.94705 1.34007 1.68443 1.22457 1.02331 0.89448 0.95232 1.44513 1.40439 1.12786 1.14254 0.69212 0.89071 0.92789 0.93841 0.89437 0.91306 0.95358 0.94181 0.91151 0.82974 0.78565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 10.20 71.98 0.73 -3.92 16 2 C 0.11 3.92 6.02 86.38 0.52 4.44 16 3 N -0.60 -25.11 2.48 -830.88 -2.06 -27.17 16 4 C 0.23 10.27 4.68 85.63 0.40 10.67 16 5 C -0.57 -26.64 7.11 25.60 0.18 -26.46 16 6 H 0.06 2.81 7.81 -2.91 -0.02 2.79 16 7 C 0.04 1.74 5.01 84.66 0.42 2.17 16 8 N -0.90 -42.87 13.29 21.45 0.28 -42.58 16 9 Si 0.95 37.60 29.54 68.60 2.03 39.63 16 10 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 12 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 13 C 0.58 25.81 7.56 86.44 0.65 26.47 16 14 O -0.58 -27.23 16.55 -4.34 -0.07 -27.30 16 15 C -0.06 -2.54 6.61 40.35 0.27 -2.27 16 16 C -0.10 -3.88 10.64 22.58 0.24 -3.64 16 17 C -0.19 -6.56 6.53 22.03 0.14 -6.42 16 18 Br -0.02 -0.54 34.08 -20.37 -0.69 -1.24 16 19 C 0.05 1.68 11.86 83.48 0.99 2.67 16 20 N -0.51 -20.65 4.77 -183.54 -0.88 -21.53 16 21 H 0.45 19.35 3.14 -92.71 -0.29 19.06 16 22 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 23 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 24 H 0.04 1.43 8.09 -2.39 -0.02 1.41 16 25 H 0.09 2.91 8.03 -2.39 -0.02 2.89 16 26 H 0.07 2.45 7.66 -2.39 -0.02 2.43 16 27 H 0.03 1.33 5.42 -2.38 -0.01 1.32 16 28 H 0.04 1.85 8.03 -2.39 -0.02 1.83 16 29 H 0.28 12.53 8.31 -92.71 -0.77 11.76 16 30 H 0.15 5.44 8.06 -2.91 -0.02 5.42 16 31 H 0.20 5.46 8.06 -2.91 -0.02 5.44 16 Total: -1.00 -52.42 287.13 4.03 -48.39 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.86 Total: 28.08 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 4.55 Total: 3.72 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -2.65 Total: -91.28 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.07 Total: -27.30 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -0.69 Total: -1.24 kcal Total: -52.42 4.03 -48.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037846331.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.131 kcal (2) G-P(sol) polarization free energy of solvation -52.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds