Wall clock time and date at job start Tue Mar 31 2020 07:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30522 * 1 3 3 Si 1.86792 * 120.00214 * 2 1 4 4 H 1.48509 * 109.47199 * 270.00490 * 3 2 1 5 5 H 1.48499 * 109.47017 * 30.00220 * 3 2 1 6 6 H 1.48493 * 109.47392 * 150.00245 * 3 2 1 7 7 C 1.40433 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99731 * 180.02562 * 7 2 1 9 9 C 1.40367 * 120.00437 * 359.97438 * 7 2 1 10 10 N 1.33187 * 126.67962 * 179.97438 * 9 7 2 11 11 C 1.34313 * 105.47860 * 179.97438 * 10 9 7 12 12 C 1.48378 * 126.20750 * 179.97438 * 11 10 9 13 13 C 1.39386 * 120.06171 * 180.02562 * 12 11 10 14 14 C 1.37874 * 119.93568 * 179.97438 * 13 12 11 15 15 C 1.38861 * 120.05901 * 0.28178 * 14 13 12 16 16 O 1.35836 * 119.93422 * 179.71896 * 15 14 13 17 17 C 1.42895 * 117.00058 * 179.97438 * 16 15 14 18 18 F 1.39895 * 109.47078 * 60.00150 * 17 16 15 19 19 F 1.39902 * 109.47216 * 180.02562 * 17 16 15 20 20 F 1.39906 * 109.47307 * 300.00145 * 17 16 15 21 21 C 1.38865 * 120.12825 * 359.44538 * 15 14 13 22 22 C 1.37870 * 120.05853 * 0.54774 * 21 15 14 23 23 N 1.31310 * 107.58665 * 0.24356 * 11 10 9 24 24 O 1.21267 * 110.51988 * 359.57278 * 23 11 10 25 25 H 0.97001 * 119.99792 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.03238 * 0.02562 * 13 12 11 27 27 H 1.08002 * 119.96560 * 179.97438 * 14 13 12 28 28 H 1.07997 * 119.96942 * 180.25790 * 21 15 14 29 29 H 1.08007 * 120.02789 * 179.74698 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6176 0.0000 4 1 2.4867 2.0464 -1.4002 5 1 1.4367 2.6526 0.7001 6 1 3.5368 1.4401 0.6999 7 6 2.0073 -1.2162 -0.0005 8 1 3.0873 -1.2162 -0.0001 9 6 1.3055 -2.4318 -0.0005 10 7 1.8328 -3.6549 -0.0015 11 6 0.7861 -4.4965 -0.0005 12 6 0.8532 -5.9788 -0.0015 13 6 -0.3204 -6.7309 -0.0008 14 6 -0.2550 -8.1081 -0.0023 15 6 0.9785 -8.7458 0.0014 16 8 1.0400 -10.1028 0.0057 17 6 2.3413 -10.6932 0.0088 18 9 3.0373 -10.2818 1.1505 19 9 2.2209 -12.0871 0.0125 20 9 3.0396 -10.2889 -1.1341 21 6 2.1493 -7.9991 -0.0050 22 6 2.0899 -6.6217 -0.0036 23 7 -0.3075 -3.7696 -0.0043 24 8 -0.0328 -2.5885 0.0010 25 1 -0.4850 0.8401 0.0004 26 1 -1.2799 -6.2353 0.0001 27 1 -1.1640 -8.6913 -0.0013 28 1 3.1072 -8.4978 -0.0063 29 1 3.0008 -6.0414 -0.0045 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045893662.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:10 Heat of formation + Delta-G solvation = -121.874861 kcal Electronic energy + Delta-G solvation = -23023.920187 eV Core-core repulsion = 18692.927312 eV Total energy + Delta-G solvation = -4330.992875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.051 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.58631 -48.32439 -48.16383 -43.12501 -40.18299 -37.70037 -34.21860 -33.75457 -31.25181 -31.01024 -29.33335 -26.60858 -26.17832 -23.42395 -22.97088 -21.43154 -20.92889 -19.71120 -19.28878 -19.09766 -18.15618 -16.65066 -15.94326 -15.93816 -15.50643 -15.33515 -15.05150 -15.01123 -14.74397 -14.63451 -14.55143 -14.27521 -14.21442 -13.80161 -13.54042 -13.23748 -13.10439 -12.26998 -12.17834 -11.73008 -11.54048 -11.51235 -10.98723 -10.57723 -10.23967 -10.21786 -9.90505 -9.09416 -9.01331 -8.78738 -7.86349 -7.17212 -5.12779 1.08595 1.37305 1.39090 2.71369 2.72608 2.91865 2.97792 3.12437 3.53360 3.64093 3.67621 3.84875 4.25279 4.67753 4.68593 4.78181 4.94496 5.10871 5.24320 5.46374 5.50022 5.89036 6.06529 6.21289 6.24398 6.42438 6.76169 6.85486 6.93413 7.21454 7.77717 7.97444 8.18855 8.35249 9.81621 10.18951 Molecular weight = 300.05amu Principal moments of inertia in cm(-1) A = 0.041607 B = 0.002917 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.799405 B = 9597.733369 C =10096.027581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.070 3.930 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.413 4.413 8 H 0.115 0.885 9 C 0.305 3.695 10 N -0.605 5.605 11 C 0.187 3.813 12 C 0.006 3.994 13 C -0.062 4.062 14 C -0.124 4.124 15 C 0.093 3.907 16 O -0.311 6.311 17 C 0.603 3.397 18 F -0.165 7.165 19 F -0.136 7.136 20 F -0.165 7.165 21 C -0.192 4.192 22 C -0.046 4.046 23 N -0.453 5.453 24 O 0.054 5.946 25 H 0.294 0.706 26 H 0.144 0.856 27 H 0.139 0.861 28 H 0.134 0.866 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 -13.506 0.015 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.155 4.155 3 Si 0.760 3.240 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.450 4.450 8 H 0.133 0.867 9 C 0.115 3.885 10 N -0.349 5.349 11 C -0.084 4.084 12 C 0.005 3.995 13 C -0.082 4.082 14 C -0.143 4.143 15 C 0.051 3.949 16 O -0.231 6.231 17 C 0.512 3.488 18 F -0.147 7.147 19 F -0.117 7.117 20 F -0.147 7.147 21 C -0.211 4.211 22 C -0.066 4.066 23 N -0.181 5.181 24 O 0.004 5.996 25 H 0.105 0.895 26 H 0.162 0.838 27 H 0.157 0.843 28 H 0.151 0.849 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.932 -14.085 0.013 14.217 hybrid contribution 0.680 0.771 -0.002 1.028 sum 2.612 -13.314 0.011 13.568 Atomic orbital electron populations 1.69628 1.07797 1.31031 1.30418 1.26213 0.95157 1.02390 0.91780 0.85806 0.80113 0.78346 0.79720 1.18800 1.19652 1.17929 1.18608 0.95110 0.85385 1.45935 0.86749 1.24155 0.79718 0.93903 0.90765 1.72358 1.27580 0.98424 1.36586 1.23160 0.87062 0.94527 1.03603 1.17646 0.93263 0.88072 1.00563 1.21094 0.98934 0.91792 0.96378 1.20240 0.94898 0.93818 1.05305 1.18758 0.95728 0.77823 1.02640 1.86363 1.25434 1.21964 1.89388 1.19360 0.78118 0.76500 0.74798 1.93306 1.79735 1.90149 1.51518 1.93290 1.95632 1.26461 1.96345 1.93307 1.79634 1.90351 1.51430 1.21390 0.96589 0.95471 1.07606 1.21066 0.98388 0.92521 0.94590 1.74587 1.23843 0.91065 1.28573 1.85519 1.25836 1.17629 1.70664 0.89518 0.83819 0.84304 0.84885 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.73 12.05 55.57 0.67 -18.06 15 2 C 0.07 1.63 5.50 -17.28 -0.10 1.54 15 3 Si 0.94 16.94 29.56 -169.99 -5.03 11.92 15 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 15 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 15 6 H -0.26 -4.54 7.11 56.52 0.40 -4.13 15 7 C -0.41 -10.51 9.48 -37.96 -0.36 -10.86 15 8 H 0.11 2.73 7.85 -52.49 -0.41 2.32 15 9 C 0.30 8.39 7.80 -16.33 -0.13 8.26 15 10 N -0.61 -16.05 11.29 -11.62 -0.13 -16.18 15 11 C 0.19 4.62 7.78 -156.50 -1.22 3.41 15 12 C 0.01 0.13 5.88 -104.87 -0.62 -0.49 15 13 C -0.06 -1.04 9.68 -39.29 -0.38 -1.42 15 14 C -0.12 -1.74 9.97 -39.48 -0.39 -2.14 15 15 C 0.09 1.32 6.49 -39.12 -0.25 1.07 15 16 O -0.31 -3.98 10.37 -19.22 -0.20 -4.18 15 17 C 0.60 6.81 3.42 101.05 0.35 7.15 15 18 F -0.17 -1.89 15.57 2.25 0.04 -1.86 15 19 F -0.14 -1.40 17.53 2.25 0.04 -1.36 15 20 F -0.17 -1.89 15.54 2.25 0.03 -1.86 15 21 C -0.19 -2.84 8.24 -39.48 -0.33 -3.17 15 22 C -0.05 -0.80 9.69 -39.29 -0.38 -1.18 15 23 N -0.45 -11.95 11.83 31.47 0.37 -11.58 15 24 O 0.05 1.52 9.72 15.15 0.15 1.67 15 25 H 0.29 6.37 8.29 -40.82 -0.34 6.03 15 26 H 0.14 2.37 7.85 -52.49 -0.41 1.95 15 27 H 0.14 1.55 8.06 -52.49 -0.42 1.13 15 28 H 0.13 1.73 5.08 -52.49 -0.27 1.46 15 29 H 0.15 2.56 7.86 -52.48 -0.41 2.15 15 LS Contribution 283.70 15.07 4.28 4.28 Total: -1.00 -28.11 283.70 -4.64 -32.76 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -1.06 Total: 2.28 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -3.80 Total: 2.17 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.91 Total: -45.81 kcal Atomic # 8 Polarization: -2.46 SS G_CDS: -0.05 Total: -2.51 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.11 Total: -5.07 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.92 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.11 -4.64 -32.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045893662.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.118 kcal (2) G-P(sol) polarization free energy of solvation -28.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds