Wall clock time and date at job start Tue Mar 31 2020 07:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46835 * 2 1 4 4 C 1.50694 * 109.47193 * 120.00288 * 2 1 3 5 5 H 1.08001 * 120.00272 * 120.00123 * 4 2 1 6 6 C 1.37875 * 120.00209 * 299.99791 * 4 2 1 7 7 N 1.31524 * 119.99765 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00419 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47252 * 90.00011 * 8 6 4 10 10 H 1.48498 * 109.47217 * 210.00171 * 8 6 4 11 11 H 1.48503 * 109.46793 * 330.00270 * 8 6 4 12 12 N 1.46507 * 109.46743 * 240.00494 * 2 1 3 13 13 C 1.34766 * 120.00168 * 84.99793 * 12 2 1 14 14 O 1.21694 * 120.00211 * 5.12298 * 13 12 2 15 15 C 1.46681 * 120.00083 * 185.11658 * 13 12 2 16 16 C 1.37879 * 126.22024 * 5.00867 * 15 13 12 17 17 C 1.39887 * 107.09139 * 180.02562 * 16 15 13 18 18 Br 1.89094 * 126.07678 * 180.02562 * 17 16 15 19 19 C 1.35511 * 107.84709 * 359.73286 * 17 16 15 20 20 N 1.35598 * 108.85779 * 0.43688 * 19 17 16 21 21 C 1.46499 * 125.67372 * 179.82852 * 20 19 17 22 22 H 1.08999 * 109.47221 * 59.99734 * 1 2 3 23 23 H 1.09007 * 109.47243 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46956 * 300.00023 * 1 2 3 25 25 H 0.96995 * 120.00008 * 179.97438 * 7 6 4 26 26 H 0.96999 * 119.99822 * 264.99476 * 12 2 1 27 27 H 1.08004 * 126.46052 * 0.03974 * 16 15 13 28 28 H 1.07999 * 125.57051 * 180.26075 * 19 17 16 29 29 H 1.09000 * 109.47245 * 264.18361 * 21 20 19 30 30 H 1.09006 * 109.46966 * 144.18671 * 21 20 19 31 31 H 1.09008 * 109.47269 * 24.18964 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3226 -1.1196 4.0078 9 1 3.6306 -0.5441 4.4118 10 1 1.3445 -0.9491 5.1122 11 1 2.4881 -2.5654 3.7120 12 7 2.0183 -0.6906 -1.1963 13 6 2.1469 -0.0182 -2.3572 14 8 1.9473 1.1818 -2.3907 15 6 2.5277 -0.7327 -3.5803 16 6 2.6894 -2.0958 -3.7107 17 6 3.0536 -2.3414 -5.0388 18 35 3.4081 -4.0351 -5.8012 19 6 3.1009 -1.1504 -5.6835 20 7 2.7891 -0.1645 -4.8063 21 6 2.7334 1.2667 -5.1141 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7082 1.1608 3.4844 26 1 2.2490 -1.6317 -1.1528 27 1 2.5593 -2.8348 -2.9339 28 1 3.3493 -1.0092 -6.7250 29 1 3.6805 1.7336 -4.8438 30 1 1.9255 1.7291 -4.5469 31 1 2.5526 1.4024 -6.1804 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392604.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:40 Heat of formation + Delta-G solvation = 7.748177 kcal Electronic energy + Delta-G solvation = -16483.960242 eV Core-core repulsion = 13619.417543 eV Total energy + Delta-G solvation = -2864.542699 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 300.021 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.34308 -38.43450 -34.91382 -33.33054 -32.39807 -30.86116 -29.55469 -28.04671 -26.21261 -25.28630 -22.91476 -20.75819 -19.91058 -19.24088 -17.87060 -16.30706 -15.61526 -15.37328 -15.15164 -14.37488 -13.91858 -13.55123 -13.37857 -13.02143 -12.75903 -12.60062 -12.44486 -12.01840 -11.74151 -11.10535 -11.00478 -10.83337 -10.78202 -10.34855 -10.26012 -10.21078 -9.28097 -9.08877 -8.62942 -8.58384 -8.28062 -7.91337 -6.14648 -4.23788 1.63704 1.74638 2.44603 2.85020 3.24766 3.31479 3.33758 3.85367 4.06635 4.36925 4.78609 4.84223 5.18027 5.21015 5.27778 5.32883 5.58384 5.74628 5.98341 6.50320 6.78151 6.82266 6.91662 7.06617 7.10150 7.36309 7.52171 7.66656 7.86944 8.10503 8.57619 8.72980 8.99986 9.43476 10.91524 Molecular weight = 300.02amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.003967 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.066351 B = 7055.991267 C = 8078.590754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.691 5.691 13 C 0.573 3.427 14 O -0.560 6.560 15 C -0.021 4.021 16 C -0.123 4.123 17 C -0.176 4.176 18 Br -0.039 7.039 19 C 0.040 3.960 20 N -0.404 5.404 21 C 0.068 3.932 22 H 0.013 0.987 23 H 0.029 0.971 24 H 0.092 0.908 25 H 0.265 0.735 26 H 0.392 0.608 27 H 0.153 0.847 28 H 0.174 0.826 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.331 -6.695 -18.122 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.070 0.930 4 C -0.572 4.572 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.338 5.338 13 C 0.358 3.642 14 O -0.442 6.442 15 C -0.136 4.136 16 C -0.149 4.149 17 C -0.261 4.261 18 Br 0.045 6.955 19 C -0.099 4.099 20 N -0.077 5.077 21 C -0.073 4.073 22 H 0.032 0.968 23 H 0.048 0.952 24 H 0.111 0.889 25 H 0.075 0.925 26 H 0.226 0.774 27 H 0.170 0.830 28 H 0.191 0.809 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.174 -5.925 -18.271 19.656 hybrid contribution 0.360 -0.568 0.923 1.141 sum 4.534 -6.492 -17.349 19.070 Atomic orbital electron populations 1.22096 0.98214 0.99352 1.00919 1.18831 0.91076 0.94151 0.79562 0.93029 1.21196 1.32530 1.13324 0.90173 0.91919 1.24878 0.94738 0.94951 0.99069 1.69900 1.35795 1.22499 1.23949 0.86423 0.78590 0.79903 0.82059 1.20544 1.21062 1.19756 1.46302 1.63991 1.13832 1.09652 1.16951 0.78338 0.86461 0.82448 1.90739 1.53394 1.14110 1.85930 1.20622 1.12920 0.92150 0.87899 1.21240 1.04228 0.93719 0.95757 1.20858 1.17867 0.90831 0.96587 1.96560 1.94974 1.20953 1.82987 1.21743 1.05983 0.86051 0.96102 1.43918 1.48613 1.07410 1.07719 1.22324 1.05553 0.77000 1.02406 0.96766 0.95232 0.88945 0.92539 0.77442 0.82950 0.80862 0.90273 0.87461 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.27 6.68 2.60 -69.08 -0.18 6.50 16 3 H 0.05 1.49 7.51 -51.93 -0.39 1.10 16 4 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.61 11.32 55.43 0.63 -23.98 16 8 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 N -0.69 -14.53 5.04 -56.24 -0.28 -14.82 16 13 C 0.57 11.66 7.74 -12.86 -0.10 11.56 16 14 O -0.56 -12.91 14.40 5.19 0.07 -12.83 16 15 C -0.02 -0.35 6.88 -81.98 -0.56 -0.91 16 16 C -0.12 -1.82 10.33 -39.10 -0.40 -2.22 16 17 C -0.18 -2.32 6.53 -39.94 -0.26 -2.58 16 18 Br -0.04 -0.44 34.08 -68.01 -2.32 -2.76 16 19 C 0.04 0.48 11.33 -16.86 -0.19 0.29 16 20 N -0.40 -5.63 3.16 -120.20 -0.38 -6.01 16 21 C 0.07 0.78 10.49 59.85 0.63 1.40 16 22 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 24 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 25 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.39 7.26 7.48 -40.82 -0.31 6.96 16 27 H 0.15 2.06 7.49 -52.48 -0.39 1.67 16 28 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.11 1.47 6.54 -51.93 -0.34 1.13 16 31 H 0.08 0.63 8.12 -51.92 -0.42 0.21 16 LS Contribution 289.80 15.07 4.37 4.37 Total: -1.00 -29.95 289.80 -7.45 -37.40 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -3.40 Total: 5.01 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -1.12 Total: -1.87 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.04 Total: -44.80 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.07 Total: -12.83 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -2.32 Total: -2.76 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.95 -7.45 -37.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392604.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.150 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds