Wall clock time and date at job start Tue Mar 31 2020 07:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47018 * 2 1 4 4 C 1.50696 * 109.47236 * 240.00499 * 2 1 3 5 5 H 1.08005 * 119.99680 * 239.99692 * 4 2 1 6 6 C 1.37875 * 120.00137 * 59.99352 * 4 2 1 7 7 N 1.31515 * 120.00073 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99889 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47126 * 60.00518 * 8 6 4 10 10 H 1.48505 * 109.46892 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47232 * 300.00200 * 8 6 4 12 12 N 1.46497 * 109.47266 * 119.99875 * 2 1 3 13 13 C 1.34778 * 120.00362 * 274.99947 * 12 2 1 14 14 O 1.21691 * 119.99828 * 5.07758 * 13 12 2 15 15 C 1.46671 * 119.99840 * 185.07145 * 13 12 2 16 16 C 1.37879 * 126.22780 * 5.01093 * 15 13 12 17 17 C 1.39881 * 107.09167 * 180.02562 * 16 15 13 18 18 Br 1.89106 * 126.07272 * 180.02562 * 17 16 15 19 19 C 1.35498 * 107.85313 * 359.73749 * 17 16 15 20 20 N 1.35601 * 108.85756 * 0.43157 * 19 17 16 21 21 C 1.46495 * 125.67738 * 179.82848 * 20 19 17 22 22 H 1.08995 * 109.47663 * 59.99669 * 1 2 3 23 23 H 1.09003 * 109.47018 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47325 * 299.99881 * 1 2 3 25 25 H 0.97003 * 119.99956 * 179.97438 * 7 6 4 26 26 H 0.97002 * 119.99858 * 95.00065 * 12 2 1 27 27 H 1.07998 * 126.45579 * 0.04470 * 16 15 13 28 28 H 1.08006 * 125.57317 * 180.25493 * 19 17 16 29 29 H 1.09000 * 109.47730 * 264.13368 * 21 20 19 30 30 H 1.09007 * 109.47331 * 24.13561 * 21 20 19 31 31 H 1.09004 * 109.47301 * 144.13230 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3213 -1.1202 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4197 -5.2205 11 1 3.8063 -1.1207 -4.0082 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.7714 1.1365 2.4364 15 6 2.7399 -0.6785 3.5250 16 6 3.2935 -1.9409 3.5537 17 6 3.7346 -2.1668 4.8618 18 35 4.5802 -3.7346 5.4966 19 6 3.4541 -1.0602 5.5917 20 7 2.8440 -0.1507 4.7920 21 6 2.3790 1.1754 5.2060 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.7093 1.1619 -3.4844 26 1 2.2490 -1.6317 1.1526 27 1 3.3722 -2.6262 2.7227 28 1 3.6771 -0.9256 6.6399 29 1 1.3191 1.1272 5.4557 30 1 2.9435 1.5021 6.0794 31 1 2.5285 1.8837 4.3911 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392606.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:43 Heat of formation + Delta-G solvation = 7.805687 kcal Electronic energy + Delta-G solvation = -16485.782016 eV Core-core repulsion = 13621.241811 eV Total energy + Delta-G solvation = -2864.540205 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 300.021 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.34078 -38.43489 -34.90719 -33.32903 -32.39646 -30.86091 -29.55911 -28.03141 -26.21107 -25.27438 -22.90071 -20.76123 -19.92843 -19.23971 -17.87146 -16.29057 -15.56643 -15.41699 -15.14960 -14.38326 -13.84469 -13.58883 -13.38338 -13.03435 -12.76614 -12.61117 -12.44465 -11.99138 -11.72291 -11.12167 -10.97716 -10.84538 -10.74539 -10.36100 -10.25146 -10.20874 -9.27910 -9.09214 -8.62631 -8.57918 -8.28026 -7.91482 -6.14314 -4.23807 1.63868 1.74932 2.44979 2.85227 3.26127 3.31122 3.32796 3.85459 4.07010 4.36955 4.78762 4.84376 5.18137 5.21377 5.27426 5.33128 5.58574 5.75041 5.98850 6.50653 6.79489 6.82636 6.94046 7.07207 7.11381 7.37100 7.51946 7.66658 7.87561 8.11065 8.57899 8.72435 9.00047 9.43500 10.91668 Molecular weight = 300.02amu Principal moments of inertia in cm(-1) A = 0.020680 B = 0.004055 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.664766 B = 6902.964928 C = 8063.619847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.268 3.732 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.691 5.691 13 C 0.573 3.427 14 O -0.560 6.560 15 C -0.021 4.021 16 C -0.122 4.122 17 C -0.176 4.176 18 Br -0.039 7.039 19 C 0.040 3.960 20 N -0.405 5.405 21 C 0.068 3.932 22 H 0.091 0.909 23 H 0.027 0.973 24 H 0.016 0.984 25 H 0.265 0.735 26 H 0.392 0.608 27 H 0.153 0.847 28 H 0.174 0.826 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.644 -6.351 17.776 19.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.166 3.834 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.338 5.338 13 C 0.358 3.642 14 O -0.441 6.441 15 C -0.136 4.136 16 C -0.149 4.149 17 C -0.261 4.261 18 Br 0.045 6.955 19 C -0.099 4.099 20 N -0.077 5.077 21 C -0.073 4.073 22 H 0.110 0.890 23 H 0.046 0.954 24 H 0.035 0.965 25 H 0.075 0.925 26 H 0.225 0.775 27 H 0.171 0.829 28 H 0.191 0.809 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.449 -5.583 17.932 19.556 hybrid contribution 0.256 -0.609 -0.894 1.112 sum 5.705 -6.192 17.038 19.005 Atomic orbital electron populations 1.22079 0.98231 0.99279 1.00999 1.18806 0.91222 0.93850 0.79487 0.93292 1.21169 1.32637 1.13371 0.90184 0.91952 1.24874 0.94732 0.94936 0.99052 1.69892 1.35766 1.22400 1.24059 0.86484 0.79202 0.79619 0.81672 1.20081 1.21129 1.20125 1.46312 1.64088 1.13645 1.09736 1.16950 0.79169 0.85892 0.82219 1.90739 1.51726 1.17421 1.84238 1.20617 1.10847 0.95295 0.86834 1.21244 1.02095 0.95281 0.96292 1.20856 1.13681 0.94889 0.96710 1.96561 1.78991 1.32032 1.87899 1.21740 1.02074 0.89056 0.97008 1.43918 1.42406 1.13801 1.07555 1.22319 1.00730 0.81453 1.02769 0.89046 0.95350 0.96520 0.92479 0.77457 0.82933 0.80866 0.90317 0.89918 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.29 16 2 C 0.27 6.74 2.52 -69.09 -0.17 6.57 16 3 H 0.05 1.41 7.65 -51.93 -0.40 1.01 16 4 C -0.54 -14.03 8.73 -34.44 -0.30 -14.33 16 5 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.69 -14.53 5.04 -56.25 -0.28 -14.81 16 13 C 0.57 11.64 7.73 -12.86 -0.10 11.54 16 14 O -0.56 -12.85 14.44 5.20 0.08 -12.77 16 15 C -0.02 -0.35 6.88 -81.98 -0.56 -0.92 16 16 C -0.12 -1.82 10.33 -39.10 -0.40 -2.23 16 17 C -0.18 -2.33 6.53 -39.95 -0.26 -2.59 16 18 Br -0.04 -0.44 34.08 -68.01 -2.32 -2.76 16 19 C 0.04 0.48 11.33 -16.86 -0.19 0.29 16 20 N -0.40 -5.63 3.16 -120.20 -0.38 -6.01 16 21 C 0.07 0.78 10.49 59.84 0.63 1.40 16 22 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.02 0.39 8.09 -51.93 -0.42 -0.03 16 25 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.39 7.25 7.48 -40.82 -0.31 6.95 16 27 H 0.15 2.08 7.48 -52.49 -0.39 1.68 16 28 H 0.17 1.47 8.06 -52.48 -0.42 1.04 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.64 8.12 -51.92 -0.42 0.21 16 31 H 0.11 1.48 6.54 -51.93 -0.34 1.14 16 LS Contribution 289.86 15.07 4.37 4.37 Total: -1.00 -29.90 289.86 -7.45 -37.35 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -3.40 Total: 5.01 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -1.12 Total: -1.85 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: -0.04 Total: -44.80 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -2.32 Total: -2.76 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.90 -7.45 -37.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392606.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.153 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds