Wall clock time and date at job start Tue Mar 31 2020 07:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35598 * 125.67502 * 2 1 4 4 C 1.35503 * 108.85467 * 179.82739 * 3 2 1 5 5 Br 1.89106 * 126.07245 * 180.14218 * 4 3 2 6 6 C 1.39874 * 107.85485 * 0.42451 * 4 3 2 7 7 C 1.37641 * 125.67653 * 180.29567 * 2 1 3 8 8 C 1.46673 * 126.22131 * 0.02562 * 7 2 1 9 9 O 1.21695 * 120.00262 * 5.00142 * 8 7 2 10 10 N 1.34780 * 119.99564 * 185.00261 * 8 7 2 11 11 C 1.46504 * 119.99688 * 185.09763 * 10 8 7 12 12 C 1.53006 * 109.46911 * 179.97438 * 11 10 8 13 13 C 1.50695 * 109.47046 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00128 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99853 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00083 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47485 * 89.99919 * 17 15 13 19 19 H 1.48501 * 109.46899 * 210.00026 * 17 15 13 20 20 H 1.48501 * 109.47304 * 329.99236 * 17 15 13 21 21 H 1.08994 * 109.47492 * 264.16314 * 1 2 3 22 22 H 1.08998 * 109.46995 * 144.15998 * 1 2 3 23 23 H 1.08999 * 109.47106 * 24.16658 * 1 2 3 24 24 H 1.08003 * 125.57183 * 359.96667 * 3 2 1 25 25 H 1.07997 * 126.45781 * 179.71879 * 6 4 3 26 26 H 0.96999 * 120.00246 * 5.09735 * 10 8 7 27 27 H 1.08992 * 109.47197 * 299.99680 * 11 10 8 28 28 H 1.09004 * 109.47063 * 60.00279 * 11 10 8 29 29 H 1.09000 * 109.47183 * 300.00634 * 12 11 10 30 30 H 1.09004 * 109.46831 * 60.00381 * 12 11 10 31 31 H 0.97007 * 120.00010 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2558 1.1015 0.0000 4 6 3.5529 0.7094 0.0039 5 35 5.0610 1.8503 0.0093 6 6 3.5781 -0.6891 -0.0035 7 6 2.2678 -1.1181 -0.0058 8 6 1.8120 -2.5122 -0.0135 9 8 0.6251 -2.7639 -0.1072 10 7 2.7079 -3.5145 0.0832 11 6 2.2658 -4.9061 -0.0366 12 6 3.4705 -5.8382 0.1086 13 6 3.0159 -7.2696 -0.0152 14 1 1.9721 -7.4923 -0.1805 15 6 3.9324 -8.2949 0.0836 16 7 5.2033 -8.0237 0.2854 17 14 3.3688 -10.0693 -0.0692 18 1 3.4277 -10.4866 -1.4932 19 1 4.2571 -10.9422 0.7396 20 1 1.9735 -10.1898 0.4246 21 1 -0.3634 -0.1045 1.0223 22 1 -0.3633 -0.8331 -0.6017 23 1 -0.3633 0.9376 -0.4207 24 1 1.9086 2.1242 -0.0005 25 1 4.4582 -1.3150 -0.0070 26 1 3.6453 -3.3145 0.2321 27 1 1.5399 -5.1254 0.7463 28 1 1.8049 -5.0582 -1.0126 29 1 4.1962 -5.6187 -0.6745 30 1 3.9319 -5.6862 1.0845 31 1 5.8482 -8.7451 0.3545 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054138783.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:22 Heat of formation + Delta-G solvation = 1.480184 kcal Electronic energy + Delta-G solvation = -15959.085123 eV Core-core repulsion = 13094.270624 eV Total energy + Delta-G solvation = -2864.814499 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 300.021 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.55153 -38.77677 -35.03452 -33.47750 -32.82186 -31.10706 -29.95448 -28.63100 -26.39039 -24.95034 -22.55190 -21.07764 -20.35016 -19.49769 -17.81533 -16.47651 -15.82975 -15.73258 -15.15792 -14.64328 -14.47980 -13.85456 -13.58198 -13.25068 -13.10882 -12.90230 -12.71987 -12.31113 -12.19920 -11.23579 -11.06022 -10.94689 -10.66306 -10.37692 -10.35607 -9.91132 -9.56607 -9.27185 -8.81223 -8.67919 -8.44452 -8.26796 -6.10419 -4.13633 1.39119 1.61853 2.26836 2.63477 3.28904 3.35190 3.38778 3.48836 3.68372 4.40709 4.61514 4.68718 4.91873 5.06600 5.11806 5.26741 5.39820 5.54026 5.78716 6.20530 6.29047 6.37715 6.62339 6.68131 6.80642 6.88779 7.49199 7.58966 7.86610 7.90291 8.24418 8.48830 8.92043 9.51336 11.01128 Molecular weight = 300.02amu Principal moments of inertia in cm(-1) A = 0.023173 B = 0.003193 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.000568 B = 8766.137335 C = 9942.993635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.404 5.404 3 C 0.046 3.954 4 C -0.176 4.176 5 Br -0.034 7.034 6 C -0.116 4.116 7 C -0.030 4.030 8 C 0.579 3.421 9 O -0.556 6.556 10 N -0.706 5.706 11 C 0.124 3.876 12 C 0.012 3.988 13 C -0.523 4.523 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.273 1.273 21 H 0.079 0.921 22 H 0.106 0.894 23 H 0.084 0.916 24 H 0.176 0.824 25 H 0.155 0.845 26 H 0.401 0.599 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 23.131 -0.288 23.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.076 5.076 3 C -0.093 4.093 4 C -0.262 4.262 5 Br 0.050 6.950 6 C -0.143 4.143 7 C -0.144 4.144 8 C 0.366 3.634 9 O -0.437 6.437 10 N -0.355 5.355 11 C 0.002 3.998 12 C -0.026 4.026 13 C -0.562 4.562 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.724 3.276 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 H 0.098 0.902 22 H 0.124 0.876 23 H 0.103 0.897 24 H 0.194 0.806 25 H 0.173 0.827 26 H 0.236 0.764 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.439 23.192 -0.339 23.448 hybrid contribution -0.020 -1.038 0.007 1.038 sum -3.459 22.154 -0.333 22.425 Atomic orbital electron populations 1.22335 0.75269 1.05066 1.04676 1.43911 1.07174 1.04700 1.51848 1.21801 0.88930 0.92021 1.06513 1.20901 0.91670 0.94230 1.19402 1.96597 1.36975 1.63049 1.98344 1.21292 0.95469 0.93115 1.04403 1.20345 0.89688 0.88351 1.16053 1.16933 0.85996 0.83146 0.77367 1.90759 1.16143 1.84848 1.51965 1.46059 1.10949 1.07206 1.71243 1.21806 1.00028 0.77120 1.00853 1.19342 0.91907 0.93350 0.97980 1.21025 0.94494 0.90430 1.50206 0.92233 1.24989 0.94849 0.99445 0.94934 1.69953 1.01453 1.32574 1.49168 0.86513 0.78678 0.84244 0.78120 1.20550 1.21149 1.19739 0.90203 0.87558 0.89714 0.80639 0.82727 0.76436 0.92202 0.92313 0.95767 0.95771 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 10.49 59.85 0.63 1.26 16 2 N -0.40 -4.84 3.16 -120.21 -0.38 -5.23 16 3 C 0.05 0.48 11.33 -16.86 -0.19 0.29 16 4 C -0.18 -2.08 6.53 -39.95 -0.26 -2.34 16 5 Br -0.03 -0.35 34.08 -68.01 -2.32 -2.67 16 6 C -0.12 -1.51 10.33 -39.10 -0.40 -1.92 16 7 C -0.03 -0.43 6.88 -81.98 -0.56 -1.00 16 8 C 0.58 9.98 7.77 -12.85 -0.10 9.88 16 9 O -0.56 -10.88 14.78 5.19 0.08 -10.81 16 10 N -0.71 -12.36 5.53 -61.61 -0.34 -12.70 16 11 C 0.12 2.58 5.62 -4.04 -0.02 2.55 16 12 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 13 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 14 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 17 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 21 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.11 1.22 6.54 -51.93 -0.34 0.88 16 23 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 24 H 0.18 1.23 8.06 -52.48 -0.42 0.80 16 25 H 0.16 1.82 7.48 -52.49 -0.39 1.43 16 26 H 0.40 6.21 7.42 -40.82 -0.30 5.90 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 294.69 15.07 4.44 4.44 Total: -1.00 -31.16 294.69 -7.81 -38.96 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -3.53 Total: 1.17 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.47 Total: -4.19 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.02 Total: -43.09 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -2.32 Total: -2.67 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.16 -7.81 -38.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138783.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.445 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds