Wall clock time and date at job start Tue Mar 31 2020 07:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86803 * 120.00075 * 2 1 4 4 H 1.48500 * 109.47061 * 269.99997 * 3 2 1 5 5 H 1.48496 * 109.47239 * 30.00191 * 3 2 1 6 6 H 1.48504 * 109.47164 * 150.00039 * 3 2 1 7 7 C 1.38756 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99909 * 0.02562 * 7 2 1 9 9 O 1.34920 * 119.99904 * 179.97438 * 7 2 1 10 10 C 1.34309 * 116.99765 * 179.97438 * 9 7 2 11 11 O 1.21214 * 120.00098 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99966 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.46904 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46875 * 179.97438 * 13 12 10 15 15 S 1.81402 * 109.47287 * 180.02562 * 14 13 12 16 16 C 1.76207 * 103.00078 * 180.02562 * 15 14 13 17 17 C 1.38958 * 120.06497 * 0.27613 * 16 15 14 18 18 C 1.38086 * 119.92813 * 180.27812 * 17 16 15 19 19 C 1.38394 * 120.06741 * 359.44443 * 18 17 16 20 20 Cl 1.73601 * 119.93375 * 180.30157 * 19 18 17 21 21 C 1.38400 * 120.13420 * 0.28272 * 19 18 17 22 22 C 1.38078 * 120.06774 * 359.97438 * 21 19 18 23 23 H 0.96996 * 119.99920 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46840 * 60.00048 * 12 10 9 25 25 H 1.08993 * 109.46846 * 300.00084 * 12 10 9 26 26 H 1.09005 * 109.47191 * 60.00617 * 13 12 10 27 27 H 1.08993 * 109.47427 * 299.99715 * 13 12 10 28 28 H 1.08998 * 109.47186 * 60.00325 * 14 13 12 29 29 H 1.09000 * 109.47621 * 300.00413 * 14 13 12 30 30 H 1.07998 * 120.03491 * 0.02562 * 17 16 15 31 31 H 1.08002 * 119.96910 * 179.72953 * 18 17 16 32 32 H 1.08000 * 119.96622 * 180.02562 * 21 19 18 33 33 H 1.08007 * 120.03719 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4460 2.6527 0.7001 6 1 3.5460 1.4402 0.7000 7 6 2.0082 -1.2017 -0.0005 8 1 1.4682 -2.1369 -0.0014 9 8 3.3574 -1.2016 -0.0011 10 6 3.9671 -2.3983 -0.0010 11 8 3.3069 -3.4149 -0.0010 12 6 5.4721 -2.4772 -0.0010 13 6 5.9059 -3.9445 -0.0016 14 6 7.4337 -4.0246 -0.0022 15 16 7.9481 -5.7641 -0.0037 16 6 9.7069 -5.6574 -0.0035 17 6 10.3290 -4.4149 0.0034 18 6 11.7075 -4.3345 -0.0023 19 6 12.4694 -5.4898 -0.0032 20 17 14.2022 -5.3848 -0.0025 21 6 11.8527 -6.7288 -0.0044 22 6 10.4746 -6.8157 -0.0041 23 1 -0.4850 0.8400 0.0004 24 1 5.8618 -1.9831 0.8890 25 1 5.8618 -1.9832 -0.8909 26 1 5.5162 -4.4382 -0.8919 27 1 5.5162 -4.4390 0.8881 28 1 7.8238 -3.5308 0.8877 29 1 7.8232 -3.5301 -0.8922 30 1 9.7349 -3.5130 0.0091 31 1 12.1916 -3.3691 -0.0013 32 1 12.4499 -7.6287 -0.0047 33 1 9.9939 -7.7828 -0.0046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058041481.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:20 Heat of formation + Delta-G solvation = -75.401159 kcal Electronic energy + Delta-G solvation = -17985.594366 eV Core-core repulsion = 14742.333847 eV Total energy + Delta-G solvation = -3243.260519 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.037 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.49587 -39.26432 -36.81762 -35.87534 -34.24792 -32.32099 -31.61143 -31.18277 -28.51683 -25.37865 -23.50041 -23.18424 -21.99463 -19.71519 -18.22536 -17.99249 -17.04759 -16.62502 -15.95149 -15.86754 -15.29958 -14.77932 -14.61789 -14.57760 -14.02441 -13.98410 -13.76496 -12.74939 -12.72401 -12.54380 -12.27774 -12.10464 -12.10186 -11.65368 -11.41476 -11.25197 -11.24250 -10.84443 -10.50101 -10.45074 -10.39339 -9.84370 -9.72505 -9.54196 -9.20648 -8.70282 -7.68607 -6.38683 -4.14689 0.58486 0.82462 1.14650 1.75295 2.12549 3.10647 3.11406 3.21907 3.32541 3.38325 4.02992 4.22512 4.29948 4.40153 4.67271 4.78443 4.84494 4.93060 5.05596 5.07219 5.09340 5.36313 5.39218 5.45330 5.58492 5.68038 5.76914 5.77938 6.06623 6.23119 6.23674 6.39901 7.72157 8.01937 8.59876 8.99563 9.65941 10.69896 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.033287 B = 0.002249 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.960555 B =12447.823759 C =13263.034686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.382 4.382 8 H 0.109 0.891 9 O -0.253 6.253 10 C 0.407 3.593 11 O -0.540 6.540 12 C -0.099 4.099 13 C -0.091 4.091 14 C -0.110 4.110 15 S -0.096 6.096 16 C -0.078 4.078 17 C -0.124 4.124 18 C -0.088 4.088 19 C -0.046 4.046 20 Cl -0.072 7.072 21 C -0.091 4.091 22 C -0.091 4.091 23 H 0.279 0.721 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.842 -9.206 0.014 28.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.458 4.458 8 H 0.127 0.873 9 O -0.162 6.162 10 C 0.253 3.747 11 O -0.435 6.435 12 C -0.139 4.139 13 C -0.130 4.130 14 C -0.258 4.258 15 S 0.150 5.850 16 C -0.192 4.192 17 C -0.149 4.149 18 C -0.109 4.109 19 C -0.076 4.076 20 Cl -0.044 7.044 21 C -0.111 4.111 22 C -0.116 4.116 23 H 0.090 0.910 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 25.769 -10.267 0.017 27.739 hybrid contribution 1.205 1.915 -0.015 2.263 sum 26.973 -8.352 0.002 28.237 Atomic orbital electron populations 1.69607 1.05713 1.28394 1.47702 1.24564 0.95027 0.98698 0.95615 0.86206 0.80244 0.81513 0.78876 1.19893 1.20772 1.18458 1.20647 0.76202 0.96948 1.51998 0.87332 1.83513 1.23980 1.31468 1.77205 1.22886 0.90532 0.82646 0.78635 1.90612 1.67137 1.36265 1.49479 1.21060 0.90868 0.97153 1.04787 1.21071 0.90058 0.96425 1.05407 1.23807 1.01125 0.94894 1.05957 1.85827 0.96219 1.11753 1.91151 1.22022 0.98197 0.96290 1.02647 1.21211 0.94498 0.96720 1.02422 1.20969 0.93173 0.97690 0.99050 1.20911 0.84607 0.95158 1.06888 1.98374 1.10356 1.98639 1.96996 1.20983 0.94297 0.96464 0.99395 1.20745 0.92485 0.97586 1.00745 0.91036 0.88732 0.88738 0.89807 0.89803 0.88932 0.88931 0.84671 0.84598 0.84467 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.85 13.96 55.48 0.77 -25.08 16 2 C 0.06 1.84 5.49 -17.53 -0.10 1.74 16 3 Si 0.91 21.14 28.62 -169.99 -4.86 16.27 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.38 -11.29 10.10 30.92 0.31 -10.98 16 8 H 0.11 3.55 7.09 -52.49 -0.37 3.18 16 9 O -0.25 -6.54 8.58 -20.70 -0.18 -6.71 16 10 C 0.41 9.14 7.91 36.01 0.28 9.43 16 11 O -0.54 -13.90 15.22 -19.06 -0.29 -14.19 16 12 C -0.10 -1.45 5.81 -27.88 -0.16 -1.61 16 13 C -0.09 -1.18 4.51 -26.73 -0.12 -1.30 16 14 C -0.11 -1.05 4.33 37.16 0.16 -0.89 16 15 S -0.10 -1.01 21.92 -107.50 -2.36 -3.37 16 16 C -0.08 -0.74 6.11 -39.05 -0.24 -0.98 16 17 C -0.12 -1.06 9.36 -39.37 -0.37 -1.43 16 18 C -0.09 -0.71 9.82 -39.58 -0.39 -1.10 16 19 C -0.05 -0.38 6.32 -39.46 -0.25 -0.63 16 20 Cl -0.07 -0.57 28.95 -51.86 -1.50 -2.07 16 21 C -0.09 -0.71 9.82 -39.58 -0.39 -1.10 16 22 C -0.09 -0.78 9.79 -39.37 -0.39 -1.16 16 23 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 27 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 28 H 0.09 0.77 7.73 -51.93 -0.40 0.36 16 29 H 0.09 0.76 7.76 -51.92 -0.40 0.36 16 30 H 0.14 0.97 5.88 -52.49 -0.31 0.66 16 31 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 321.37 15.07 4.84 4.84 Total: -1.00 -32.63 321.37 -8.79 -41.41 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -3.57 Total: -1.09 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.64 Total: -10.02 kcal Atomic # 7 Polarization: -25.85 SS G_CDS: 0.77 Total: -25.08 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.47 Total: -20.90 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.86 Total: 16.27 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -2.36 Total: -3.37 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.63 -8.79 -41.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058041481.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.987 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds