Wall clock time and date at job start Tue Mar 31 2020 07:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48498 * 109.47029 * 239.99900 * 3 2 1 5 5 H 1.48490 * 109.47325 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47057 * 120.00399 * 3 2 1 7 7 C 1.37872 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00219 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47849 * 180.02562 * 9 7 2 11 11 O 1.45198 * 109.47382 * 179.97438 * 10 9 7 12 12 C 1.34231 * 116.99731 * 179.97438 * 11 10 9 13 13 O 1.20828 * 120.00073 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99685 * 180.02562 * 12 11 10 15 15 S 1.81408 * 109.46964 * 180.02562 * 14 12 11 16 16 C 1.76200 * 102.99890 * 180.02562 * 15 14 12 17 17 C 1.38943 * 120.08321 * 359.96994 * 16 15 14 18 18 C 1.38095 * 119.93341 * 180.02562 * 17 16 15 19 19 C 1.38315 * 120.09588 * 0.02843 * 18 17 16 20 20 C 1.38285 * 120.17055 * 359.97438 * 19 18 17 21 21 C 1.38189 * 120.06580 * 359.97438 * 20 19 18 22 22 Cl 1.73605 * 120.05138 * 180.02562 * 21 20 19 23 23 H 0.97002 * 120.00252 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47339 * 60.00041 * 9 7 2 25 25 H 1.09006 * 109.46965 * 300.00485 * 9 7 2 26 26 H 1.09005 * 109.46722 * 59.99534 * 10 9 7 27 27 H 1.08998 * 109.47276 * 300.00531 * 10 9 7 28 28 H 1.08992 * 109.47071 * 60.00144 * 14 12 11 29 29 H 1.09000 * 109.47250 * 299.99978 * 14 12 11 30 30 H 1.08003 * 120.03525 * 0.05021 * 17 16 15 31 31 H 1.08000 * 119.95248 * 180.29889 * 18 17 16 32 32 H 1.08003 * 119.91246 * 179.97438 * 19 18 17 33 33 H 1.07997 * 119.97004 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5194 -4.9195 0.0001 12 6 2.2505 -6.0452 -0.0004 13 8 3.4571 -5.9819 -0.0008 14 6 1.5664 -7.3880 -0.0004 15 16 2.8158 -8.7032 -0.0003 16 6 1.8440 -10.1730 -0.0011 17 6 0.4570 -10.0909 -0.0009 18 6 -0.3015 -11.2449 -0.0010 19 6 0.3174 -12.4818 -0.0006 20 6 1.6976 -12.5683 -0.0007 21 6 2.4633 -11.4180 -0.0017 22 17 4.1960 -11.5270 -0.0025 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6042 0.8895 27 1 2.8721 -3.6043 -0.8904 28 1 0.9433 -7.4783 -0.8901 29 1 0.9439 -7.4786 0.8898 30 1 -0.0274 -9.1256 -0.0012 31 1 -1.3797 -11.1814 -0.0058 32 1 -0.2787 -13.3824 -0.0002 33 1 2.1775 -13.5358 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058830717.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:27 Heat of formation + Delta-G solvation = -76.407941 kcal Electronic energy + Delta-G solvation = -18123.630617 eV Core-core repulsion = 14880.326441 eV Total energy + Delta-G solvation = -3243.304176 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.037 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.07701 -39.46413 -36.75302 -36.30527 -33.42242 -31.97289 -31.10941 -30.82244 -29.73705 -25.07302 -23.37979 -23.15617 -21.48239 -20.70392 -18.50833 -17.51376 -16.82693 -16.45654 -16.24185 -16.07588 -15.61253 -15.06955 -14.55192 -14.45769 -14.19800 -13.90579 -13.83011 -12.79851 -12.79212 -12.41435 -12.20218 -11.90142 -11.87096 -11.31622 -11.30924 -11.13335 -10.80324 -10.76723 -10.43438 -10.37431 -10.19911 -9.74761 -9.70991 -9.37142 -9.23282 -8.48429 -7.71843 -6.14596 -4.19422 0.65986 0.77213 0.88695 1.74199 2.07472 2.31830 3.00023 3.14225 3.27937 3.32039 3.35530 4.30014 4.34966 4.52033 4.66178 4.79978 4.83099 4.86012 5.02662 5.06368 5.22109 5.33762 5.60883 5.74973 5.96666 5.97998 6.00439 6.29384 6.54708 6.80094 7.47994 7.55095 7.79410 7.99431 8.18139 8.85751 9.45343 10.96838 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.036274 B = 0.002438 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.714796 B =11481.473630 C =12227.440936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.350 6.350 12 C 0.475 3.525 13 O -0.497 6.497 14 C -0.138 4.138 15 S 0.000 6.000 16 C -0.096 4.096 17 C -0.127 4.127 18 C -0.093 4.093 19 C -0.118 4.118 20 C -0.092 4.092 21 C -0.023 4.023 22 Cl -0.053 7.053 23 H 0.264 0.736 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.577 -26.649 -0.006 26.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.266 6.266 12 C 0.316 3.684 13 O -0.386 6.386 14 C -0.286 4.286 15 S 0.245 5.755 16 C -0.210 4.210 17 C -0.151 4.151 18 C -0.113 4.113 19 C -0.139 4.139 20 C -0.112 4.112 21 C -0.057 4.057 22 Cl -0.023 7.023 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.022 -26.154 -0.006 26.174 hybrid contribution -0.824 0.783 0.000 1.137 sum 0.198 -25.371 -0.005 25.372 Atomic orbital electron populations 1.69957 1.06113 1.27191 1.49583 1.24978 0.94929 0.99420 0.94765 0.86514 0.79483 0.82373 0.78842 1.20016 1.21093 1.20023 1.20926 0.93180 0.90030 1.52504 0.92238 1.19181 0.94167 0.88906 0.98946 1.23765 0.96499 0.78121 1.01305 1.86509 1.42173 1.15526 1.82433 1.22181 0.86199 0.86315 0.73732 1.90697 1.15137 1.87749 1.44987 1.23518 1.02733 0.93086 1.09282 1.86586 1.06627 0.91445 1.90806 1.22050 0.97197 0.97173 1.04575 1.21244 0.91289 1.00054 1.02528 1.21196 1.00374 0.91971 0.97728 1.21154 0.93768 0.98208 1.00770 1.21019 0.93820 0.97000 0.99328 1.20380 0.85344 0.93099 1.06873 1.98394 1.09167 1.98089 1.96694 0.92594 0.95283 0.95294 0.91982 0.91973 0.85307 0.85310 0.84748 0.84914 0.84848 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.03 0.65 5.35 -27.89 -0.15 0.50 16 10 C 0.08 1.64 5.40 37.16 0.20 1.84 16 11 O -0.35 -6.68 10.22 -39.26 -0.40 -7.08 16 12 C 0.48 7.93 7.98 36.01 0.29 8.22 16 13 O -0.50 -9.67 15.61 -18.75 -0.29 -9.97 16 14 C -0.14 -1.61 4.93 36.01 0.18 -1.43 16 15 S 0.00 0.00 19.97 -107.50 -2.15 -2.15 16 16 C -0.10 -1.01 6.11 -39.02 -0.24 -1.25 16 17 C -0.13 -1.09 9.36 -39.37 -0.37 -1.46 16 18 C -0.09 -0.64 10.04 -39.61 -0.40 -1.04 16 19 C -0.12 -0.77 10.04 -39.54 -0.40 -1.16 16 20 C -0.09 -0.71 9.82 -39.58 -0.39 -1.10 16 21 C -0.02 -0.24 6.34 -39.30 -0.25 -0.49 16 22 Cl -0.05 -0.56 27.84 -51.86 -1.44 -2.00 16 23 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 27 H 0.06 1.34 8.13 -51.93 -0.42 0.91 16 28 H 0.13 1.21 7.75 -51.93 -0.40 0.80 16 29 H 0.13 1.21 7.75 -51.92 -0.40 0.80 16 30 H 0.13 0.96 5.88 -52.48 -0.31 0.65 16 31 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 32 H 0.13 0.52 8.06 -52.48 -0.42 0.09 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 321.89 15.07 4.85 4.85 Total: -1.00 -31.55 321.89 -9.27 -40.81 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: -3.61 Total: -4.59 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -1.93 Total: -10.73 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.74 Total: -25.35 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.69 Total: -17.05 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.15 Total: -2.15 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.44 Total: -2.00 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.55 -9.27 -40.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058830717.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.597 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds