Wall clock time and date at job start Tue Mar 31 2020 07:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47411 * 2 1 4 4 O 1.45199 * 109.47252 * 239.99979 * 2 1 3 5 5 C 1.34229 * 117.00195 * 89.99784 * 4 2 1 6 6 O 1.20819 * 119.99860 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99851 * 180.02562 * 5 4 2 8 8 S 1.81002 * 109.47192 * 180.02562 * 7 5 4 9 9 C 1.76198 * 100.00159 * 179.97438 * 8 7 5 10 10 H 1.08004 * 119.99883 * 359.97438 * 9 8 7 11 11 C 1.38792 * 119.99726 * 179.97438 * 9 8 7 12 12 N 1.31628 * 120.00398 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99805 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46922 * 60.00234 * 13 11 9 15 15 H 1.48500 * 109.46974 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47177 * 300.00418 * 13 11 9 17 17 C 1.50696 * 109.47396 * 119.99902 * 2 1 3 18 18 C 1.38247 * 119.98658 * 265.00270 * 17 2 1 19 19 C 1.38216 * 120.01497 * 179.97438 * 18 17 2 20 20 C 1.38357 * 119.98603 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.01134 * 180.02562 * 20 19 18 22 22 C 1.38347 * 119.97107 * 0.28224 * 20 19 18 23 23 C 1.38218 * 119.98923 * 359.44450 * 22 20 19 24 24 H 1.09002 * 109.47217 * 60.00360 * 1 2 3 25 25 H 1.09004 * 109.47164 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46946 * 300.00410 * 1 2 3 27 27 H 1.09010 * 109.46868 * 299.99763 * 7 5 4 28 28 H 1.08998 * 109.47802 * 59.99606 * 7 5 4 29 29 H 0.96999 * 120.00221 * 180.02562 * 12 11 9 30 30 H 1.08003 * 119.99321 * 359.97438 * 18 17 2 31 31 H 1.08003 * 120.00776 * 179.97438 * 19 18 17 32 32 H 1.08000 * 120.00661 * 179.71600 * 22 20 19 33 33 H 1.07997 * 119.99399 * 180.27944 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2171 0.0640 -2.2811 6 8 1.9982 1.2518 -2.2504 7 6 2.7183 -0.5773 -3.5495 8 16 2.8902 0.6840 -4.8362 9 6 3.4737 -0.3134 -6.1664 10 1 3.6174 -1.3742 -6.0232 11 6 3.7487 0.2643 -7.3980 12 7 3.5741 1.5572 -7.5723 13 14 4.3681 -0.7930 -8.8081 14 1 3.3630 -1.8407 -9.1196 15 1 4.5852 0.0573 -10.0060 16 1 5.6489 -1.4359 -8.4192 17 6 2.0324 -0.7104 1.2304 18 6 2.3611 0.0144 2.3609 19 6 2.8214 -0.6366 3.4899 20 6 2.9537 -2.0138 3.4884 21 17 3.5312 -2.8322 4.9063 22 6 2.6307 -2.7379 2.3547 23 6 2.1651 -2.0864 1.2281 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.6872 -1.0410 -3.3639 28 1 2.0089 -1.3371 -3.8774 29 1 3.7660 1.9609 -8.4332 30 1 2.2581 1.0895 2.3618 31 1 3.0785 -0.0702 4.3728 32 1 2.7381 -3.8126 2.3514 33 1 1.9086 -2.6520 0.3446 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061175847.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:46 Heat of formation + Delta-G solvation = -77.296240 kcal Electronic energy + Delta-G solvation = -18547.561056 eV Core-core repulsion = 15304.218361 eV Total energy + Delta-G solvation = -3243.342696 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.037 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.49632 -39.40005 -36.94628 -36.22766 -33.10288 -32.50575 -31.38620 -29.82254 -29.13297 -25.59106 -24.30305 -23.26614 -21.74618 -20.40064 -18.03750 -17.65176 -17.18407 -16.27339 -15.97462 -15.56568 -15.00933 -14.86348 -14.23894 -14.09079 -13.95752 -13.80115 -13.49104 -13.04100 -12.73958 -12.70507 -12.15239 -12.02997 -11.83920 -11.61840 -11.18931 -11.12803 -11.07870 -11.03572 -10.83920 -10.59232 -10.06039 -9.93460 -9.35164 -9.12698 -8.91852 -8.39316 -6.62868 -6.29166 -4.02207 0.75436 0.98417 1.81019 2.56464 2.60796 3.20442 3.20662 3.25497 3.30495 3.48736 4.12913 4.32970 4.47487 4.57458 4.84874 4.94271 5.03939 5.06410 5.07186 5.16279 5.34051 5.38987 5.60082 5.60998 5.70270 5.74283 5.85289 5.90902 5.99217 6.04707 6.20992 6.45390 6.66325 7.53103 8.11241 8.28106 9.16239 10.78254 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.028942 B = 0.002623 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.227127 B =10673.546565 C =11255.094049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.124 3.876 3 H 0.097 0.903 4 O -0.354 6.354 5 C 0.481 3.519 6 O -0.486 6.486 7 C -0.129 4.129 8 S -0.058 6.058 9 C -0.537 4.537 10 H 0.076 0.924 11 C 0.075 3.925 12 N -0.867 5.867 13 Si 0.922 3.078 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.273 1.273 17 C -0.080 4.080 18 C -0.095 4.095 19 C -0.111 4.111 20 C -0.034 4.034 21 Cl -0.074 7.074 22 C -0.112 4.112 23 C -0.080 4.080 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.270 0.730 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.681 -7.264 21.994 23.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.069 3.931 3 H 0.115 0.885 4 O -0.272 6.272 5 C 0.322 3.678 6 O -0.371 6.371 7 C -0.277 4.277 8 S 0.169 5.831 9 C -0.685 4.685 10 H 0.094 0.906 11 C -0.135 4.135 12 N -0.502 5.502 13 Si 0.748 3.252 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.198 1.198 17 C -0.080 4.080 18 C -0.113 4.113 19 C -0.130 4.130 20 C -0.060 4.060 21 Cl -0.045 7.045 22 C -0.130 4.130 23 C -0.098 4.098 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.907 -5.690 22.075 23.129 hybrid contribution 0.702 -1.966 -0.744 2.217 sum -3.204 -7.656 21.331 22.889 Atomic orbital electron populations 1.22177 0.93070 1.03336 1.03484 1.21362 0.94657 0.96548 0.80524 0.88521 1.86568 1.77690 1.42739 1.20205 1.23324 0.74161 0.85957 0.84358 1.90657 1.46781 1.16284 1.83417 1.23307 1.04539 1.05851 0.93972 1.85411 1.86769 1.08673 1.02292 1.22797 1.51882 0.96443 0.97372 0.90629 1.25001 0.94916 0.95390 0.98187 1.69997 1.45337 1.09999 1.24903 0.86177 0.79326 0.79648 0.80092 1.19829 1.20768 1.19832 1.19805 0.99591 0.94263 0.94375 1.20948 0.98095 1.00360 0.91934 1.20991 1.00438 0.92288 0.99254 1.20993 1.02845 0.93003 0.89199 1.98373 1.87394 1.79240 1.39517 1.21102 0.99702 1.00604 0.91635 1.21063 0.97060 0.93845 0.97809 0.90985 0.91388 0.90699 0.87915 0.87884 0.91994 0.84690 0.84692 0.84709 0.84161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.53 37.16 0.35 -1.38 16 2 C 0.12 1.54 2.77 -27.89 -0.08 1.46 16 3 H 0.10 1.27 7.06 -51.93 -0.37 0.91 16 4 O -0.35 -5.31 9.03 -39.26 -0.35 -5.66 16 5 C 0.48 8.86 7.95 36.01 0.29 9.15 16 6 O -0.49 -10.22 15.08 -18.74 -0.28 -10.50 16 7 C -0.13 -2.56 6.27 36.01 0.23 -2.33 16 8 S -0.06 -1.52 20.58 -107.50 -2.21 -3.73 16 9 C -0.54 -14.89 9.50 30.94 0.29 -14.59 16 10 H 0.08 1.98 7.80 -52.48 -0.41 1.57 16 11 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -25.55 13.22 55.49 0.73 -24.82 16 13 Si 0.92 20.97 29.55 -169.99 -5.02 15.94 16 14 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 C -0.08 -0.86 5.01 -104.62 -0.52 -1.38 16 18 C -0.10 -0.88 9.68 -39.59 -0.38 -1.26 16 19 C -0.11 -0.97 9.83 -39.55 -0.39 -1.36 16 20 C -0.03 -0.32 6.32 -39.50 -0.25 -0.57 16 21 Cl -0.07 -0.65 28.96 -51.86 -1.50 -2.15 16 22 C -0.11 -1.04 9.83 -39.55 -0.39 -1.43 16 23 C -0.08 -0.81 9.35 -39.59 -0.37 -1.18 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.10 1.90 8.14 -51.91 -0.42 1.48 16 28 H 0.10 1.88 8.14 -51.92 -0.42 1.46 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 31 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 32 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 33 H 0.14 1.37 7.62 -52.49 -0.40 0.97 16 LS Contribution 324.95 15.07 4.90 4.90 Total: -1.00 -31.35 324.95 -8.75 -40.11 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -3.69 Total: -1.20 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -1.32 Total: -12.89 kcal Atomic # 7 Polarization: -25.55 SS G_CDS: 0.73 Total: -24.82 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.64 Total: -16.17 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.35 -8.75 -40.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061175847.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.190 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds