Wall clock time and date at job start Tue Mar 31 2020 07:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00046 * 2 1 4 4 H 1.48505 * 109.47093 * 264.18118 * 3 2 1 5 5 H 1.48500 * 109.47174 * 24.18163 * 3 2 1 6 6 H 1.48504 * 109.47096 * 144.17917 * 3 2 1 7 7 C 1.38809 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00135 * 319.19566 * 7 2 1 9 9 N 1.36937 * 120.00382 * 139.19208 * 7 2 1 10 10 C 1.46968 * 120.59257 * 320.76177 * 9 7 2 11 11 C 1.53371 * 108.63125 * 235.20130 * 10 9 7 12 12 N 1.46963 * 108.63857 * 310.57403 * 11 10 9 13 13 C 1.34773 * 120.59189 * 235.20835 * 12 11 10 14 14 O 1.21725 * 119.99776 * 185.41892 * 13 12 11 15 15 C 1.46463 * 120.00471 * 5.41961 * 13 12 11 16 16 C 1.36690 * 125.45056 * 132.11724 * 15 13 12 17 17 C 1.37406 * 113.31379 * 179.73897 * 16 15 13 18 18 C 1.34016 * 115.07336 * 0.44204 * 17 16 15 19 19 Cl 1.73604 * 124.53159 * 179.83272 * 18 17 16 20 20 S 1.70616 * 110.93687 * 359.56381 * 18 17 16 21 21 C 1.46959 * 118.81160 * 55.47679 * 12 11 10 22 22 C 1.46962 * 120.59407 * 140.73386 * 9 7 2 23 23 H 0.96997 * 119.99738 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.61094 * 115.45524 * 10 9 7 25 25 H 1.09002 * 109.74736 * 355.02414 * 10 9 7 26 26 H 1.08997 * 109.60957 * 190.82712 * 11 10 9 27 27 H 1.08999 * 109.61260 * 70.32286 * 11 10 9 28 28 H 1.07999 * 123.34293 * 359.97438 * 16 15 13 29 29 H 1.07995 * 122.46461 * 180.25244 * 17 16 15 30 30 H 1.09008 * 109.61244 * 64.26673 * 21 12 11 31 31 H 1.08998 * 109.61275 * 184.77846 * 21 12 11 32 32 H 1.09000 * 109.60791 * 244.53881 * 22 9 7 33 33 H 1.08992 * 109.61438 * 5.05544 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6206 1.9754 -1.3929 5 1 1.3916 2.6850 0.5735 6 1 3.4809 1.4787 0.8194 7 6 2.0102 -1.2021 -0.0005 8 1 1.6671 -2.0241 0.6103 9 7 3.1300 -1.3460 -0.7756 10 6 3.1856 -0.7654 -2.1246 11 6 3.5297 -1.8776 -3.1230 12 7 4.6975 -2.6149 -2.6206 13 6 5.7995 -2.7564 -3.3834 14 8 6.7216 -3.4512 -2.9977 15 6 5.8877 -2.0743 -4.6765 16 6 6.9544 -1.3404 -5.1146 17 6 6.7732 -0.8141 -6.3709 18 6 5.5941 -1.0981 -6.9410 19 17 5.1071 -0.5566 -8.5169 20 16 4.6385 -2.0692 -5.9140 21 6 4.6399 -3.2002 -1.2738 22 6 4.2978 -2.0833 -0.2731 23 1 -0.4849 0.8400 0.0004 24 1 3.9534 0.0074 -2.1588 25 1 2.2184 -0.3318 -2.3790 26 1 3.7636 -1.4390 -4.0930 27 1 2.6826 -2.5566 -3.2205 28 1 7.8521 -1.1923 -4.5327 29 1 7.5244 -0.2130 -6.8615 30 1 3.8699 -3.9713 -1.2426 31 1 5.6071 -3.6353 -1.0223 32 1 5.1448 -1.4043 -0.1757 33 1 4.0639 -2.5220 0.6968 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071138056.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:26 Heat of formation + Delta-G solvation = 33.276994 kcal Electronic energy + Delta-G solvation = -19929.998696 eV Core-core repulsion = 16723.743567 eV Total energy + Delta-G solvation = -3206.255129 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.95849 -38.08629 -37.07216 -36.61010 -34.01714 -31.83892 -30.95088 -29.61289 -27.28777 -25.15787 -23.51105 -23.28278 -21.57577 -19.99942 -19.25003 -18.22193 -16.77281 -16.34374 -16.09382 -15.29593 -15.18784 -14.69140 -14.31385 -13.94148 -13.78254 -13.65814 -13.40101 -13.13395 -12.86705 -12.45431 -12.27796 -12.02162 -11.66414 -11.56879 -11.16594 -10.98484 -10.72890 -10.69408 -10.54737 -10.36874 -9.86621 -9.82058 -8.91875 -8.69024 -8.67357 -8.31013 -6.89777 -6.26891 -3.48203 0.27452 0.77867 1.47493 1.89683 2.19817 2.89161 3.24634 3.30588 3.43677 3.52312 4.45606 4.52256 4.76697 4.92191 5.11082 5.13272 5.43799 5.54148 5.58638 5.65685 5.79533 5.81217 5.95944 5.99079 6.04324 6.17096 6.48100 6.55564 6.68308 6.80666 7.54469 7.85018 8.18660 8.25289 8.83173 9.56648 10.04884 10.88174 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.004900 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.795687 B = 5712.897976 C = 6632.639255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.060 3.940 3 Si 0.838 3.162 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.292 4.292 8 H 0.076 0.924 9 N -0.595 5.595 10 C 0.135 3.865 11 C 0.077 3.923 12 N -0.589 5.589 13 C 0.583 3.417 14 O -0.537 6.537 15 C -0.243 4.243 16 C -0.067 4.067 17 C -0.129 4.129 18 C -0.187 4.187 19 Cl -0.014 7.014 20 S 0.272 5.728 21 C 0.097 3.903 22 C 0.127 3.873 23 H 0.266 0.734 24 H 0.025 0.975 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.157 0.843 29 H 0.152 0.848 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.026 0.974 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.905 -2.364 -14.140 17.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.144 4.144 3 Si 0.663 3.337 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.419 4.419 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.008 3.992 11 C -0.049 4.049 12 N -0.320 5.320 13 C 0.369 3.631 14 O -0.416 6.416 15 C -0.364 4.364 16 C -0.099 4.099 17 C -0.162 4.162 18 C -0.332 4.332 19 Cl 0.015 6.985 20 S 0.539 5.461 21 C -0.026 4.026 22 C 0.000 4.000 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.174 0.826 29 H 0.169 0.831 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.044 0.956 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.666 -3.243 -14.172 16.925 hybrid contribution 1.828 2.009 -0.163 2.721 sum 10.494 -1.234 -14.335 17.808 Atomic orbital electron populations 1.70189 1.06621 1.27480 1.45468 1.25520 0.94570 0.97528 0.96829 0.87404 0.81462 0.86183 0.78612 1.20862 1.22116 1.20021 1.18569 1.00394 0.96966 1.25958 0.90618 1.44215 1.13379 1.63281 1.10970 1.21521 1.00511 0.92495 0.84703 1.22844 0.87526 0.96551 0.97962 1.47970 1.14526 1.52939 1.16596 1.16957 0.82781 0.80788 0.82548 1.90814 1.38318 1.39608 1.72875 1.24758 1.00322 1.10352 1.00952 1.20476 0.98454 0.96141 0.94826 1.19993 0.96984 1.03720 0.95522 1.25179 1.01976 1.10523 0.95541 1.98374 1.90905 1.88411 1.20854 1.83529 1.14390 1.45174 1.02978 1.22404 1.02295 0.97076 0.80825 1.21553 0.90311 0.92511 0.95590 0.92437 0.95731 0.89778 0.90815 0.90157 0.82564 0.83059 0.91038 0.89483 0.95578 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.39 13.97 55.49 0.78 -23.62 16 2 C 0.06 1.62 4.65 -17.43 -0.08 1.54 16 3 Si 0.84 20.62 27.15 -169.99 -4.62 16.00 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.29 -7.65 9.63 -15.06 -0.15 -7.79 16 8 H 0.08 2.12 8.06 -52.48 -0.42 1.70 16 9 N -0.59 -13.37 2.49 -171.77 -0.43 -13.80 16 10 C 0.13 2.73 4.92 -3.59 -0.02 2.71 16 11 C 0.08 1.27 6.14 -3.60 -0.02 1.24 16 12 N -0.59 -9.98 2.94 -173.83 -0.51 -10.49 16 13 C 0.58 9.78 7.52 -12.95 -0.10 9.68 16 14 O -0.54 -10.29 16.53 5.17 0.09 -10.21 16 15 C -0.24 -3.39 5.45 -36.83 -0.20 -3.59 16 16 C -0.07 -0.81 10.25 -40.44 -0.41 -1.23 16 17 C -0.13 -1.37 10.08 -41.37 -0.42 -1.78 16 18 C -0.19 -2.06 6.82 29.25 0.20 -1.87 16 19 Cl -0.01 -0.14 29.27 -51.86 -1.52 -1.66 16 20 S 0.27 3.20 19.99 -107.50 -2.15 1.05 16 21 C 0.10 1.65 6.61 -3.37 -0.02 1.62 16 22 C 0.13 2.43 6.69 -3.36 -0.02 2.40 16 23 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.02 0.51 8.00 -51.93 -0.42 0.09 16 25 H 0.08 1.82 6.99 -51.93 -0.36 1.46 16 26 H 0.07 1.07 3.95 -30.54 -0.12 0.95 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 31 H 0.09 1.42 7.02 -51.93 -0.36 1.05 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 1.44 7.93 -51.93 -0.41 1.03 16 LS Contribution 303.22 15.07 4.57 4.57 Total: -1.00 -29.68 303.22 -8.38 -38.06 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: -3.35 Total: -2.86 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -1.24 Total: 2.94 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.16 Total: -47.91 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.62 Total: 16.00 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -2.15 Total: 1.05 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.52 Total: -1.66 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.68 -8.38 -38.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071138056.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.341 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds