Wall clock time and date at job start Tue Mar 31 2020 07:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47149 * 256.44028 * 3 2 1 5 5 N 1.46499 * 109.47277 * 180.02562 * 4 3 2 6 6 C 1.46506 * 119.99936 * 84.99719 * 5 4 3 7 7 C 1.50701 * 109.46970 * 85.00357 * 6 5 4 8 8 H 1.08005 * 119.99694 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00052 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00110 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00229 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47250 * 89.99260 * 11 9 7 13 13 H 1.48497 * 109.47067 * 209.99831 * 11 9 7 14 14 H 1.48502 * 109.46618 * 329.99589 * 11 9 7 15 15 S 1.65597 * 119.99926 * 265.27680 * 5 4 3 16 16 O 1.42095 * 106.40469 * 23.26116 * 15 5 4 17 17 O 1.42098 * 106.40441 * 156.18457 * 15 5 4 18 18 C 1.76207 * 107.21624 * 269.72430 * 15 5 4 19 19 C 1.33380 * 125.20340 * 90.00152 * 18 15 5 20 20 C 1.38430 * 114.91965 * 179.97438 * 19 18 15 21 21 C 1.33379 * 114.92188 * 359.97438 * 20 19 18 22 22 S 1.75881 * 125.19973 * 269.69121 * 18 15 5 23 23 H 1.09005 * 109.46837 * 136.43959 * 3 2 1 24 24 H 1.08995 * 109.47543 * 16.44097 * 3 2 1 25 25 H 1.08991 * 109.46933 * 59.99876 * 4 3 2 26 26 H 1.09000 * 109.46920 * 299.99947 * 4 3 2 27 27 H 1.08999 * 109.46864 * 204.99706 * 6 5 4 28 28 H 1.08999 * 109.46950 * 325.00088 * 6 5 4 29 29 H 0.97000 * 119.99969 * 180.02562 * 10 9 7 30 30 H 1.08000 * 122.54088 * 359.95211 * 19 18 15 31 31 H 1.07997 * 122.53556 * 180.02562 * 20 19 18 32 32 H 1.07996 * 125.20764 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.3391 1.4023 5 7 4.5828 0.3404 1.4022 6 6 5.3143 1.5438 0.9984 7 6 5.4576 2.4654 2.1822 8 1 5.0447 2.1830 3.1394 9 6 6.1148 3.6694 2.0429 10 7 6.6171 4.0134 0.8772 11 14 6.2930 4.8114 3.5104 12 1 7.5490 4.4930 4.2358 13 1 6.3365 6.2191 3.0397 14 1 5.1351 4.6299 4.4223 15 16 5.4120 -1.0207 1.8518 16 8 4.5291 -2.1149 1.6460 17 8 6.6925 -0.9302 1.2425 18 6 5.6798 -0.9178 3.5904 19 6 4.8533 -1.3895 4.5249 20 6 5.2745 -1.1932 5.8289 21 6 6.4433 -0.5627 5.9532 22 16 7.0817 -0.1841 4.3585 23 1 2.9710 0.7456 -0.7082 24 1 2.9718 -0.9848 -0.2908 25 1 2.7549 -0.4057 2.1104 26 1 2.7541 1.3246 1.6931 27 1 6.3028 1.2633 0.6347 28 1 4.7664 2.0531 0.2056 29 1 7.0798 4.8603 0.7794 30 1 3.9256 -1.8865 4.2827 31 1 4.7006 -1.5263 6.6810 32 1 6.9259 -0.3246 6.8895 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073754236.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:37 Heat of formation + Delta-G solvation = -12.161691 kcal Electronic energy + Delta-G solvation = -20107.799917 eV Core-core repulsion = 16901.618125 eV Total energy + Delta-G solvation = -3206.181792 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.039 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -37.60827 -37.18336 -36.68432 -35.72538 -35.39360 -32.84356 -30.72713 -29.64699 -27.01770 -24.19553 -23.85889 -22.19905 -19.95067 -18.79536 -17.77517 -17.57163 -16.80756 -16.45570 -15.84031 -15.43371 -14.71684 -14.58489 -14.47680 -13.88143 -13.52276 -13.04885 -12.79143 -12.67745 -12.52115 -12.33905 -12.31910 -12.00804 -11.75154 -11.62827 -11.46564 -11.21193 -11.09817 -11.03245 -10.66643 -10.57766 -10.51115 -10.15998 -9.91773 -9.11345 -8.56031 -8.33373 -8.23963 -6.18342 -4.24437 0.65701 0.97424 1.74980 2.09966 2.65092 2.89303 2.95885 3.20795 3.28827 3.29757 3.47296 4.10359 4.29907 4.31865 4.92593 5.01090 5.11082 5.17626 5.27911 5.41413 5.49389 5.63719 5.72692 5.96499 6.14462 6.15789 6.33245 6.44402 7.12707 7.28429 7.43249 7.71536 7.78061 8.04487 8.79999 9.42457 10.89815 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.010249 B = 0.008530 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.244448 B = 3281.715619 C = 4875.752824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.223 3.777 3 C -0.053 4.053 4 C 0.137 3.863 5 N -0.977 5.977 6 C 0.239 3.761 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.069 3.931 10 N -0.887 5.887 11 Si 0.887 3.113 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.273 1.273 15 S 2.712 3.288 16 O -0.969 6.969 17 O -0.949 6.949 18 C -0.775 4.775 19 C -0.014 4.014 20 C -0.165 4.165 21 C -0.199 4.199 22 S 0.258 5.742 23 H 0.119 0.881 24 H 0.112 0.888 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.265 0.735 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.956 -8.187 6.241 10.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.095 4.095 3 C -0.095 4.095 4 C 0.009 3.991 5 N -0.816 5.816 6 C 0.118 3.882 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.134 4.134 10 N -0.525 5.525 11 Si 0.714 3.286 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.198 1.198 15 S 2.798 3.202 16 O -0.960 6.960 17 O -0.939 6.939 18 C -0.975 4.975 19 C -0.050 4.050 20 C -0.197 4.197 21 C -0.338 4.338 22 S 0.526 5.474 23 H 0.137 0.863 24 H 0.130 0.870 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.166 0.834 31 H 0.159 0.841 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.898 -7.945 5.090 9.479 hybrid contribution -0.750 0.536 2.195 2.381 sum -1.649 -7.409 7.285 10.521 Atomic orbital electron populations 1.81182 1.13058 1.09724 1.08865 1.29078 0.95071 0.92468 0.92918 1.19905 0.81417 1.06160 1.02040 1.20928 0.80425 1.04011 0.93747 1.57444 1.13039 1.31327 1.79775 1.19399 0.92499 0.79918 0.96370 1.21506 1.36936 1.03098 0.96587 0.91824 1.24876 0.95103 0.97705 0.95743 1.69910 1.36607 1.23041 1.22962 0.86670 0.78737 0.80223 0.82941 1.20349 1.21095 1.19803 1.01433 0.73570 0.72721 0.72498 1.93531 1.66317 1.51304 1.84808 1.93582 1.40340 1.86351 1.73649 1.36094 1.09866 1.20840 1.30736 1.19892 0.98664 0.95143 0.91291 1.20280 0.97591 1.04072 0.97748 1.26269 1.00799 1.03731 1.02977 1.84518 1.16909 1.51845 0.94149 0.86275 0.86968 0.90505 0.88613 0.92479 0.93520 0.92498 0.83437 0.84107 0.81597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.26 18.54 42.16 0.78 -6.47 16 2 C 0.22 3.07 15.43 -20.76 -0.32 2.75 16 3 C -0.05 -0.65 6.02 -29.52 -0.18 -0.83 16 4 C 0.14 1.97 5.29 -4.04 -0.02 1.94 16 5 N -0.98 -17.21 2.77 -115.66 -0.32 -17.53 16 6 C 0.24 5.18 5.44 -5.19 -0.03 5.16 16 7 C -0.54 -12.94 9.38 -34.44 -0.32 -13.26 16 8 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -23.71 13.29 55.43 0.74 -22.98 16 11 Si 0.89 19.77 29.54 -169.99 -5.02 14.74 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 15 S 2.71 48.57 5.79 -107.50 -0.62 47.95 16 16 O -0.97 -17.04 16.77 -57.17 -0.96 -18.00 16 17 O -0.95 -19.86 16.46 -57.17 -0.94 -20.80 16 18 C -0.77 -12.91 6.57 29.03 0.19 -12.72 16 19 C -0.01 -0.20 9.84 -41.21 -0.41 -0.61 16 20 C -0.17 -2.07 10.18 -41.21 -0.42 -2.49 16 21 C -0.20 -2.55 11.23 29.03 0.33 -2.23 16 22 S 0.26 4.22 23.21 -107.50 -2.50 1.72 16 23 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 24 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 25 H 0.08 0.97 7.61 -51.93 -0.40 0.57 16 26 H 0.10 1.38 8.11 -51.93 -0.42 0.96 16 27 H 0.06 1.37 6.91 -51.93 -0.36 1.01 16 28 H 0.05 1.02 8.11 -51.93 -0.42 0.59 16 29 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.15 1.77 8.05 -52.49 -0.42 1.35 16 31 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 319.85 15.07 4.82 4.82 Total: -1.00 -30.07 319.85 -8.55 -38.62 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -3.25 Total: -1.45 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -1.28 Total: -20.63 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 1.20 Total: -46.98 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -1.90 Total: -38.80 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 52.79 SS G_CDS: -3.12 Total: 49.67 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.07 -8.55 -38.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073754236.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.460 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds