Wall clock time and date at job start Tue Mar 31 2020 07:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47149 * 256.44028 * 3 2 1 5 5 N 1.46499 * 109.47277 * 180.02562 * 4 3 2 6 6 C 1.46506 * 119.99936 * 84.99719 * 5 4 3 7 7 C 1.50701 * 109.46970 * 85.00357 * 6 5 4 8 8 H 1.08005 * 119.99694 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00052 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00110 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00229 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47250 * 89.99260 * 11 9 7 13 13 H 1.48497 * 109.47067 * 209.99831 * 11 9 7 14 14 H 1.48502 * 109.46618 * 329.99589 * 11 9 7 15 15 S 1.65597 * 119.99926 * 265.27680 * 5 4 3 16 16 O 1.42095 * 106.40469 * 23.26116 * 15 5 4 17 17 O 1.42098 * 106.40441 * 156.18457 * 15 5 4 18 18 C 1.76207 * 107.21624 * 269.72430 * 15 5 4 19 19 C 1.33380 * 125.20340 * 90.00152 * 18 15 5 20 20 C 1.38430 * 114.91965 * 179.97438 * 19 18 15 21 21 C 1.33379 * 114.92188 * 359.97438 * 20 19 18 22 22 S 1.75881 * 125.19973 * 269.69121 * 18 15 5 23 23 H 1.09005 * 109.46837 * 136.43959 * 3 2 1 24 24 H 1.08995 * 109.47543 * 16.44097 * 3 2 1 25 25 H 1.08991 * 109.46933 * 59.99876 * 4 3 2 26 26 H 1.09000 * 109.46920 * 299.99947 * 4 3 2 27 27 H 1.08999 * 109.46864 * 204.99706 * 6 5 4 28 28 H 1.08999 * 109.46950 * 325.00088 * 6 5 4 29 29 H 0.97000 * 119.99969 * 180.02562 * 10 9 7 30 30 H 1.08000 * 122.54088 * 359.95211 * 19 18 15 31 31 H 1.07997 * 122.53556 * 180.02562 * 20 19 18 32 32 H 1.07996 * 125.20764 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.3391 1.4023 5 7 4.5828 0.3404 1.4022 6 6 5.3143 1.5438 0.9984 7 6 5.4576 2.4654 2.1822 8 1 5.0447 2.1830 3.1394 9 6 6.1148 3.6694 2.0429 10 7 6.6171 4.0134 0.8772 11 14 6.2930 4.8114 3.5104 12 1 7.5490 4.4930 4.2358 13 1 6.3365 6.2191 3.0397 14 1 5.1351 4.6299 4.4223 15 16 5.4120 -1.0207 1.8518 16 8 4.5291 -2.1149 1.6460 17 8 6.6925 -0.9302 1.2425 18 6 5.6798 -0.9178 3.5904 19 6 4.8533 -1.3895 4.5249 20 6 5.2745 -1.1932 5.8289 21 6 6.4433 -0.5627 5.9532 22 16 7.0817 -0.1841 4.3585 23 1 2.9710 0.7456 -0.7082 24 1 2.9718 -0.9848 -0.2908 25 1 2.7549 -0.4057 2.1104 26 1 2.7541 1.3246 1.6931 27 1 6.3028 1.2633 0.6347 28 1 4.7664 2.0531 0.2056 29 1 7.0798 4.8603 0.7794 30 1 3.9256 -1.8865 4.2827 31 1 4.7006 -1.5263 6.6810 32 1 6.9259 -0.3246 6.8895 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073754236.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:36 Heat of formation + Delta-G solvation = -31.554091 kcal Electronic energy + Delta-G solvation = -20108.640835 eV Core-core repulsion = 16901.618125 eV Total energy + Delta-G solvation = -3207.022710 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.039 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.73408 -38.42572 -38.09961 -37.07169 -36.86302 -34.63485 -32.07500 -30.75342 -28.71617 -25.34275 -25.28938 -23.73858 -21.11255 -19.97433 -19.12443 -18.86568 -18.23534 -18.12800 -17.16341 -16.79862 -16.26900 -15.86777 -15.59721 -15.25619 -14.86137 -14.35695 -14.19228 -13.84972 -13.78034 -13.64395 -13.50942 -13.38486 -13.15626 -13.07516 -12.93333 -12.84246 -12.64598 -12.40451 -12.27562 -12.07523 -11.73283 -11.63920 -11.56371 -10.49626 -10.23851 -9.82675 -9.46319 -8.10031 -6.19749 -0.58661 -0.27480 0.56677 1.01249 1.44782 1.47432 1.54489 1.60640 1.76231 1.84656 2.12381 2.48114 2.77501 3.12691 3.24369 3.56703 3.95090 4.09253 4.17377 4.43793 4.48120 4.54032 4.60343 4.94295 5.04319 5.11010 5.12890 5.40895 5.44629 5.54530 5.80177 5.92684 6.18684 6.60833 6.91482 7.49433 8.97930 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.010249 B = 0.008530 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.244448 B = 3281.715619 C = 4875.752824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.248 3.752 3 C -0.047 4.047 4 C 0.128 3.872 5 N -0.977 5.977 6 C 0.253 3.747 7 C -0.534 4.534 8 H 0.068 0.932 9 C 0.020 3.980 10 N -0.924 5.924 11 Si 0.937 3.063 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.264 1.264 15 S 2.722 3.278 16 O -0.968 6.968 17 O -0.988 6.988 18 C -0.800 4.800 19 C -0.001 4.001 20 C -0.166 4.166 21 C -0.172 4.172 22 S 0.177 5.823 23 H 0.131 0.869 24 H 0.126 0.874 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.028 0.972 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.172 0.828 31 H 0.183 0.817 32 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.222 -8.956 8.620 12.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.069 4.069 3 C -0.089 4.089 4 C 0.001 3.999 5 N -0.815 5.815 6 C 0.130 3.870 7 C -0.573 4.573 8 H 0.086 0.914 9 C -0.180 4.180 10 N -0.564 5.564 11 Si 0.764 3.236 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.188 1.188 15 S 2.811 3.189 16 O -0.959 6.959 17 O -0.979 6.979 18 C -1.003 5.003 19 C -0.037 4.037 20 C -0.196 4.196 21 C -0.310 4.310 22 S 0.443 5.557 23 H 0.148 0.852 24 H 0.144 0.856 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.189 0.811 31 H 0.200 0.800 32 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -2.198 -8.736 7.453 11.692 hybrid contribution -0.393 0.665 1.568 1.748 sum -2.591 -8.071 9.021 12.379 Atomic orbital electron populations 1.81214 1.14198 1.11191 1.10126 1.29129 0.94938 0.91171 0.91708 1.19920 0.80392 1.07358 1.01258 1.21173 0.78414 1.04889 0.95427 1.57244 1.14299 1.29760 1.80203 1.18965 0.91598 0.80843 0.95605 1.21800 1.35438 1.02843 0.97238 0.91364 1.25562 0.95372 0.99374 0.97666 1.70017 1.38135 1.23504 1.24717 0.85858 0.78911 0.78334 0.80531 1.20144 1.21446 1.18799 1.00820 0.72680 0.72521 0.72887 1.93521 1.66016 1.51017 1.85299 1.93533 1.42285 1.86822 1.75238 1.35729 1.10938 1.23709 1.29915 1.20408 0.98614 0.93014 0.91655 1.20719 0.97575 1.03220 0.98132 1.26655 1.00388 1.02087 1.01882 1.84799 1.18795 1.54206 0.97911 0.85159 0.85569 0.88377 0.88635 0.95434 0.93810 0.92752 0.81099 0.80026 0.78079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.13 18.54 20.00 0.37 -14.76 16 2 C 0.25 6.41 15.43 89.44 1.38 7.79 16 3 C -0.05 -1.09 6.02 28.79 0.17 -0.91 16 4 C 0.13 3.45 5.29 86.38 0.46 3.90 16 5 N -0.98 -33.85 2.77 -519.85 -1.44 -35.29 16 6 C 0.25 11.10 5.44 85.63 0.47 11.56 16 7 C -0.53 -25.47 9.38 25.60 0.24 -25.23 16 8 H 0.07 3.13 7.81 -2.91 -0.02 3.11 16 9 C 0.02 1.02 5.46 84.65 0.46 1.48 16 10 N -0.92 -50.34 13.29 21.45 0.28 -50.05 16 11 Si 0.94 40.30 29.54 68.60 2.03 42.32 16 12 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 13 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 14 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 15 S 2.72 96.43 5.79 -56.49 -0.33 96.10 16 16 O -0.97 -32.58 16.77 -128.00 -2.15 -34.73 16 17 O -0.99 -42.67 16.46 -128.00 -2.11 -44.78 16 18 C -0.80 -25.61 6.57 66.72 0.44 -25.17 16 19 C 0.00 -0.02 9.84 21.22 0.21 0.19 16 20 C -0.17 -3.41 10.18 21.22 0.22 -3.19 16 21 C -0.17 -3.81 11.23 66.72 0.75 -3.06 16 22 S 0.18 5.66 23.21 -56.49 -1.31 4.35 16 23 H 0.13 2.76 8.14 -2.38 -0.02 2.74 16 24 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 25 H 0.10 2.22 7.61 -2.39 -0.02 2.20 16 26 H 0.10 2.59 8.11 -2.39 -0.02 2.57 16 27 H 0.03 1.38 6.91 -2.39 -0.02 1.37 16 28 H 0.04 1.93 8.11 -2.39 -0.02 1.91 16 29 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 30 H 0.17 3.40 8.05 -2.91 -0.02 3.37 16 31 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 32 H 0.20 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -65.51 319.85 1.29 -64.22 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.14 Total: 5.24 kcal Atomic # 6 Polarization: -37.42 SS G_CDS: 4.79 Total: -32.63 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -0.78 Total: -100.10 kcal Atomic # 8 Polarization: -75.25 SS G_CDS: -4.25 Total: -79.50 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 16 Polarization: 102.09 SS G_CDS: -1.64 Total: 100.45 kcal Total: -65.51 1.29 -64.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073754236.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.664 kcal (2) G-P(sol) polarization free energy of solvation -65.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds