Wall clock time and date at job start Tue Mar 31 2020 07:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 120.00168 * 2 1 4 4 H 1.48504 * 109.46975 * 269.99663 * 3 2 1 5 5 H 1.48495 * 109.47259 * 29.99696 * 3 2 1 6 6 H 1.48494 * 109.47252 * 149.99888 * 3 2 1 7 7 C 1.38805 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99734 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99971 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99878 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46686 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00427 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99877 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00447 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47294 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47238 * 179.97438 * 15 14 13 17 17 C 1.38716 * 120.39965 * 89.99975 * 16 15 14 18 18 C 1.38561 * 118.43084 * 179.97438 * 17 16 15 19 19 C 1.38396 * 119.15549 * 359.97438 * 18 17 16 20 20 Cl 1.73596 * 119.63406 * 180.02562 * 19 18 17 21 21 N 1.31943 * 120.72782 * 0.02562 * 19 18 17 22 22 C 1.31910 * 121.70940 * 359.73051 * 21 19 18 23 23 H 0.97003 * 119.99847 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46925 * 60.00038 * 10 9 7 25 25 H 1.08996 * 109.46897 * 299.99996 * 10 9 7 26 26 H 0.97006 * 119.99798 * 0.02562 * 13 11 10 27 27 H 1.09001 * 109.47059 * 60.00204 * 14 13 11 28 28 H 1.09004 * 109.47074 * 300.00161 * 14 13 11 29 29 H 1.09001 * 109.46832 * 60.00150 * 15 14 13 30 30 H 1.09000 * 109.47611 * 300.00447 * 15 14 13 31 31 H 1.07998 * 120.78070 * 359.95615 * 17 16 15 32 32 H 1.08006 * 120.41879 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.60959 * 180.29040 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.6999 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7909 -5.5022 0.0011 13 7 2.8439 -6.3432 0.0008 14 6 2.3302 -7.7151 0.0008 15 6 3.5023 -8.6986 -0.0004 16 6 2.9738 -10.1099 0.0003 17 6 2.7263 -10.7674 -1.1958 18 6 2.2413 -12.0644 -1.1476 19 6 2.0219 -12.6569 0.0838 20 17 1.4150 -14.2816 0.1587 21 7 2.2688 -12.0004 1.2014 22 6 2.7354 -10.7666 1.1921 23 1 -0.4850 0.8401 -0.0004 24 1 3.1244 -3.7314 0.8905 25 1 3.1244 -3.7314 -0.8894 26 1 3.8008 -6.1836 0.0004 27 1 1.7213 -7.8751 -0.8890 28 1 1.7219 -7.8753 0.8910 29 1 4.1115 -8.5387 0.8892 30 1 4.1103 -8.5383 -0.8907 31 1 2.9072 -10.2797 -2.1423 32 1 2.0371 -12.6062 -2.0593 33 1 2.9300 -10.2626 2.1273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150993501.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:16 Heat of formation + Delta-G solvation = -20.035300 kcal Electronic energy + Delta-G solvation = -17928.711753 eV Core-core repulsion = 14720.144829 eV Total energy + Delta-G solvation = -3208.566924 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.78852 -39.19772 -37.11790 -35.70163 -33.44807 -32.45382 -32.41952 -30.02108 -28.08424 -25.52213 -24.27842 -24.16036 -21.91935 -20.44882 -17.94791 -17.79873 -17.28136 -16.43849 -16.14580 -15.49766 -15.39881 -14.84357 -14.81913 -14.35481 -14.11361 -13.89367 -13.69086 -13.26506 -12.64912 -12.58911 -12.39979 -12.11396 -11.86973 -11.72461 -11.48875 -11.08166 -11.04555 -10.78536 -10.38445 -10.05917 -9.84209 -9.49955 -9.25772 -9.09424 -8.97564 -8.26279 -6.52656 -6.23685 -3.94581 0.41413 0.69503 1.40692 2.95339 3.04386 3.15538 3.20817 3.26653 3.30446 3.64730 4.00472 4.18321 4.27870 4.32511 4.42149 4.56061 4.68590 4.86595 5.11465 5.13256 5.15201 5.20629 5.39668 5.49602 5.57665 5.77747 5.82386 5.86199 6.01234 6.10131 6.51626 7.25158 7.57402 7.62675 8.33078 8.55175 9.21593 10.83708 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.057122 B = 0.002009 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.060799 B =13931.134635 C =14116.480441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.516 6.516 13 N -0.741 5.741 14 C 0.126 3.874 15 C -0.088 4.088 16 C -0.126 4.126 17 C -0.056 4.056 18 C -0.151 4.151 19 C 0.170 3.830 20 Cl -0.034 7.034 21 N -0.476 5.476 22 C 0.126 3.874 23 H 0.269 0.731 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.399 0.601 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.026 -24.322 -1.960 26.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.396 5.396 14 C 0.001 3.999 15 C -0.126 4.126 16 C -0.129 4.129 17 C -0.082 4.082 18 C -0.172 4.172 19 C 0.006 3.994 20 Cl -0.005 7.005 21 N -0.187 5.187 22 C -0.031 4.031 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.233 0.767 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.620 -25.122 -1.147 26.278 hybrid contribution 2.484 1.524 -0.768 3.014 sum 10.104 -23.598 -1.915 25.741 Atomic orbital electron populations 1.70019 1.05956 1.27483 1.46786 1.25004 0.95040 0.99061 0.94528 0.86159 0.79401 0.81541 0.78346 1.20271 1.20743 1.19693 1.22862 0.94901 0.91621 1.59027 0.90901 1.85424 1.04904 0.96371 1.96726 1.23529 1.06610 0.95291 1.04970 1.20333 0.86513 0.86293 0.75102 1.90716 1.15395 1.85593 1.47279 1.45986 1.10016 1.05312 1.78260 1.21221 0.95288 0.80452 1.02897 1.20750 0.97948 0.89373 1.04563 1.20819 1.00608 0.97315 0.94161 1.21577 0.94482 0.93204 0.98945 1.21865 1.01428 0.96174 0.97748 1.21688 0.98364 0.89102 0.90261 1.98414 1.85521 1.17898 1.98676 1.67038 1.11997 1.09305 1.30320 1.22670 0.93462 0.88740 0.98246 0.92160 0.89154 0.89174 0.76724 0.91430 0.91315 0.89422 0.89558 0.83461 0.83555 0.81560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.17 29.55 -169.99 -5.02 16.14 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 11 C 0.53 9.45 7.85 -10.99 -0.09 9.37 16 12 O -0.52 -11.47 15.86 5.55 0.09 -11.38 16 13 N -0.74 -8.74 5.56 -60.30 -0.33 -9.08 16 14 C 0.13 1.25 5.66 -4.05 -0.02 1.23 16 15 C -0.09 -0.53 5.48 -27.88 -0.15 -0.68 16 16 C -0.13 -0.89 5.15 -104.48 -0.54 -1.43 16 17 C -0.06 -0.37 9.86 -39.29 -0.39 -0.75 16 18 C -0.15 -1.09 9.88 -39.40 -0.39 -1.48 16 19 C 0.17 1.59 7.27 -17.45 -0.13 1.46 16 20 Cl -0.03 -0.29 29.11 -51.86 -1.51 -1.80 16 21 N -0.48 -4.93 10.34 -10.36 -0.11 -5.04 16 22 C 0.13 1.04 10.86 -17.55 -0.19 0.85 16 23 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 25 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 26 H 0.40 3.37 8.47 -40.82 -0.35 3.03 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.09 0.40 8.10 -51.93 -0.42 -0.02 16 31 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.15 0.72 8.06 -52.48 -0.42 0.30 16 33 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -35.41 326.21 -8.61 -44.02 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -3.69 Total: -1.71 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -1.47 Total: -6.99 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.29 Total: -39.36 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.51 Total: -1.80 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.41 -8.61 -44.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150993501.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.984 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds