Wall clock time and date at job start Tue Mar 31 2020 07:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 120.00061 * 2 1 4 4 H 1.48497 * 109.46883 * 269.99683 * 3 2 1 5 5 H 1.48500 * 109.46857 * 29.99780 * 3 2 1 6 6 H 1.48503 * 109.47145 * 149.99398 * 3 2 1 7 7 C 1.38799 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00488 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99787 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00050 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47207 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47417 * 180.02562 * 11 10 9 13 13 S 1.81391 * 109.47223 * 179.97438 * 12 11 10 14 14 C 1.76204 * 102.99791 * 180.02562 * 13 12 11 15 15 N 1.32482 * 119.71182 * 359.72643 * 14 13 12 16 16 C 1.31936 * 121.61641 * 180.28523 * 15 14 13 17 17 C 1.38071 * 120.86212 * 359.97438 * 16 15 14 18 18 C 1.38871 * 119.33448 * 0.02562 * 17 16 15 19 19 C 1.38307 * 118.51461 * 359.97438 * 18 17 16 20 20 N 1.47996 * 120.45571 * 179.97438 * 19 18 17 21 21 O 1.21800 * 119.99869 * 0.02819 * 20 19 18 22 22 O 1.21797 * 120.00566 * 180.02562 * 20 19 18 23 23 H 0.97007 * 120.00119 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46854 * 60.00048 * 10 9 7 25 25 H 1.08997 * 109.47031 * 300.00140 * 10 9 7 26 26 H 1.08997 * 109.47267 * 59.99566 * 11 10 9 27 27 H 1.09011 * 109.47246 * 300.00269 * 11 10 9 28 28 H 1.09005 * 109.47215 * 59.99768 * 12 11 10 29 29 H 1.08997 * 109.46812 * 300.00268 * 12 11 10 30 30 H 1.08003 * 119.56932 * 180.02562 * 16 15 14 31 31 H 1.07991 * 120.33346 * 179.97438 * 17 16 15 32 32 H 1.07999 * 120.74216 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7002 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9793 -5.3243 0.0012 12 6 3.1512 -6.3078 0.0018 13 16 2.5151 -8.0065 0.0034 14 6 3.9839 -8.9797 0.0047 15 7 5.1669 -8.3833 -0.0011 16 6 6.2903 -9.0751 -0.0059 17 6 6.2719 -10.4557 -0.0045 18 6 5.0523 -11.1198 0.0015 19 6 3.8913 -10.3683 0.0064 20 7 2.5683 -11.0317 0.0123 21 8 2.4968 -12.2476 0.0133 22 8 1.5511 -10.3618 0.0162 23 1 -0.4851 0.8401 -0.0004 24 1 3.1244 -3.7313 0.8905 25 1 3.1244 -3.7313 -0.8894 26 1 1.3704 -5.4846 -0.8885 27 1 1.3708 -5.4840 0.8914 28 1 3.7598 -6.1473 0.8918 29 1 3.7600 -6.1481 -0.8881 30 1 7.2367 -8.5547 -0.0101 31 1 7.1966 -11.0134 -0.0089 32 1 5.0114 -12.1990 0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174015239.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:30 Heat of formation + Delta-G solvation = 21.246007 kcal Electronic energy + Delta-G solvation = -18247.185583 eV Core-core repulsion = 15042.452458 eV Total energy + Delta-G solvation = -3204.733126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.039 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.44818 -40.59606 -36.79370 -34.44200 -33.59530 -32.49618 -32.45465 -27.40929 -26.97351 -25.51003 -24.75644 -23.42632 -21.49209 -19.80840 -18.98166 -18.39905 -17.81100 -17.51062 -17.01054 -16.08772 -15.43417 -15.00650 -14.82373 -14.79656 -14.20539 -14.07223 -13.43876 -13.11880 -12.70382 -12.21190 -11.90908 -11.71236 -11.57408 -11.35380 -11.11084 -11.06011 -10.93252 -10.74196 -10.69571 -10.54135 -10.45880 -10.10423 -9.57781 -9.08526 -8.35260 -8.09180 -6.56830 -6.25287 -3.96340 -0.63534 0.20652 0.87674 0.96729 1.08333 1.98773 2.75167 3.19736 3.20486 3.27553 3.52604 3.66364 3.78310 4.04588 4.12659 4.19141 4.48012 4.89947 4.99679 5.10373 5.11043 5.12767 5.36437 5.49256 5.55786 5.71255 5.91731 6.08151 6.18434 6.41004 6.61905 6.81220 7.41334 7.57998 8.33919 9.20899 10.82873 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.031649 B = 0.002647 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.495373 B =10576.477801 C =11435.216980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.073 0.927 9 S -0.128 6.128 10 C -0.108 4.108 11 C -0.085 4.085 12 C -0.135 4.135 13 S 0.065 5.935 14 C 0.165 3.835 15 N -0.481 5.481 16 C 0.171 3.829 17 C -0.193 4.193 18 C 0.012 3.988 19 C -0.101 4.101 20 N 0.036 4.964 21 O -0.173 6.173 22 O -0.133 6.133 23 H 0.268 0.732 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.179 0.821 31 H 0.159 0.841 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.659 -22.275 -0.019 26.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.666 4.666 8 H 0.091 0.909 9 S 0.100 5.900 10 C -0.258 4.258 11 C -0.125 4.125 12 C -0.284 4.284 13 S 0.314 5.686 14 C -0.085 4.085 15 N -0.195 5.195 16 C 0.009 3.991 17 C -0.218 4.218 18 C -0.016 4.016 19 C -0.197 4.197 20 N 0.550 4.450 21 O -0.382 6.382 22 O -0.348 6.348 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.196 0.804 31 H 0.177 0.823 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 11.708 -21.351 -0.017 24.350 hybrid contribution 3.064 0.575 -0.005 3.118 sum 14.772 -20.776 -0.022 25.492 Atomic orbital electron populations 1.70018 1.05922 1.27404 1.47079 1.25018 0.95088 0.99106 0.94562 0.86158 0.79430 0.81519 0.78377 1.20254 1.20720 1.19692 1.22676 0.94519 0.90683 1.58691 0.90909 1.84683 1.09057 0.99371 1.96878 1.23241 1.03158 0.96232 1.03195 1.21063 0.95369 0.92031 1.04012 1.24117 1.03073 0.94384 1.06860 1.87206 0.99127 0.98858 1.83370 1.23612 0.99838 0.92040 0.93043 1.68653 0.96595 1.37887 1.16346 1.23367 0.97036 0.91856 0.86882 1.22155 0.98352 0.95671 1.05589 1.21455 0.89674 1.02170 0.88283 1.21584 0.84944 0.92530 1.20640 1.43299 1.02341 1.01029 0.98308 1.94526 1.93527 0.95600 1.54554 1.94530 1.23982 1.63677 1.52647 0.92238 0.91849 0.91845 0.90423 0.90423 0.88754 0.88751 0.80396 0.82320 0.81663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.52 -14.70 9.50 30.94 0.29 -14.41 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.13 -3.31 21.44 -107.50 -2.30 -5.61 16 10 C -0.11 -2.11 5.67 37.16 0.21 -1.90 16 11 C -0.08 -1.34 5.22 -26.73 -0.14 -1.48 16 12 C -0.13 -1.77 5.20 37.16 0.19 -1.57 16 13 S 0.06 0.83 18.76 -107.50 -2.02 -1.18 16 14 C 0.16 1.91 7.00 -16.93 -0.12 1.79 16 15 N -0.48 -4.93 9.43 -12.10 -0.11 -5.05 16 16 C 0.17 1.08 11.17 -17.57 -0.20 0.89 16 17 C -0.19 -0.92 10.11 -39.41 -0.40 -1.32 16 18 C 0.01 0.08 9.66 -39.32 -0.38 -0.30 16 19 C -0.10 -1.09 6.89 -79.59 -0.55 -1.64 16 20 N 0.04 0.47 4.45 34.14 0.15 0.62 16 21 O -0.17 -2.21 18.52 -29.46 -0.55 -2.75 16 22 O -0.13 -1.90 15.84 -29.46 -0.47 -2.37 16 23 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 25 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 28 H 0.09 1.21 8.14 -51.92 -0.42 0.79 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.18 0.51 8.06 -52.48 -0.42 0.08 16 31 H 0.16 0.18 8.06 -52.49 -0.42 -0.25 16 32 H 0.17 0.80 7.69 -52.49 -0.40 0.40 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -33.04 317.24 -9.31 -42.36 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: -3.33 Total: -4.02 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -1.18 Total: -18.01 kcal Atomic # 7 Polarization: -30.31 SS G_CDS: 0.77 Total: -29.54 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -1.01 Total: -5.12 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -4.32 Total: -6.80 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.04 -9.31 -42.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174015239.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.603 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds