Wall clock time and date at job start Tue Mar 31 2020 07:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38427 * 122.54397 * 2 1 4 4 C 1.33384 * 114.92365 * 179.76541 * 3 2 1 5 5 S 1.76206 * 125.20400 * 180.20807 * 4 3 2 6 6 O 1.42104 * 106.40231 * 203.81821 * 5 4 3 7 7 O 1.42096 * 106.40078 * 336.74109 * 5 4 3 8 8 N 1.65601 * 107.21801 * 90.28036 * 5 4 3 9 9 C 1.36938 * 119.99982 * 269.99918 * 8 5 4 10 10 H 1.08004 * 119.99900 * 7.03996 * 9 8 5 11 11 C 1.38812 * 120.00175 * 187.04572 * 9 8 5 12 12 N 1.31615 * 119.99773 * 26.45055 * 11 9 8 13 13 Si 1.86804 * 119.99977 * 206.45022 * 11 9 8 14 14 H 1.48496 * 109.46864 * 60.00003 * 13 11 9 15 15 H 1.48500 * 109.46752 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47035 * 300.00010 * 13 11 9 17 17 C 1.46500 * 119.99901 * 90.00168 * 8 5 4 18 18 C 1.47197 * 109.47069 * 92.88634 * 17 8 5 19 19 N 7.91470 * 150.44886 * 32.36414 * 2 1 3 20 20 S 1.75887 * 109.59310 * 0.46982 * 4 3 2 21 21 C 1.33392 * 122.54018 * 180.28459 * 2 1 3 22 22 C 1.50702 * 125.20254 * 359.97438 * 21 2 1 23 23 H 1.09002 * 109.47531 * 269.71627 * 1 2 3 24 24 H 1.08993 * 109.47292 * 149.71470 * 1 2 3 25 25 H 1.09000 * 109.46991 * 29.71543 * 1 2 3 26 26 H 1.07999 * 122.53654 * 359.97438 * 3 2 1 27 27 H 0.97000 * 119.99602 * 180.02562 * 12 11 9 28 28 H 1.09002 * 109.46538 * 212.88128 * 17 8 5 29 29 H 1.08993 * 109.47426 * 332.88149 * 17 8 5 30 30 H 1.08997 * 109.47167 * 89.99509 * 22 21 2 31 31 H 1.08997 * 109.47233 * 210.00282 * 22 21 2 32 32 H 1.09004 * 109.46636 * 330.00065 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5736 0.9900 0.0050 5 16 4.7714 2.2824 0.0115 6 8 5.9610 1.7298 -0.5351 7 8 4.1277 3.4287 -0.5278 8 7 5.1040 2.6345 1.5951 9 6 4.3718 3.5861 2.2533 10 1 3.5066 4.0256 1.7790 11 6 4.7414 3.9862 3.5301 12 7 5.9973 3.8901 3.9120 13 14 3.4565 4.6610 4.7062 14 1 2.4116 3.6322 4.9409 15 1 4.1025 5.0131 5.9961 16 1 2.8338 5.8733 4.1165 17 6 6.1818 1.9278 2.2917 18 6 7.4293 2.7007 2.1777 19 7 8.3920 3.2972 2.0896 20 16 3.9385 -0.7305 -0.0036 21 6 2.2244 -1.1245 -0.0056 22 6 1.6536 -2.5192 -0.0120 23 1 -0.3634 -0.0051 1.0276 24 1 -0.3633 -0.8873 -0.5182 25 1 -0.3633 0.8925 -0.5094 26 1 1.7965 2.1464 -0.0004 27 1 6.2555 4.1693 4.8044 28 1 5.9203 1.8131 3.3437 29 1 6.3212 0.9445 1.8427 30 1 1.5155 -2.8506 -1.0411 31 1 2.3398 -3.1950 0.4984 32 1 0.6925 -2.5207 0.5023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271399708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:20 Heat of formation + Delta-G solvation = -2.528357 kcal Electronic energy + Delta-G solvation = -20137.537378 eV Core-core repulsion = 16931.773319 eV Total energy + Delta-G solvation = -3205.764060 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.039 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -38.36438 -36.65255 -36.33981 -35.00156 -34.34628 -32.25344 -31.55866 -29.55113 -27.45016 -25.58601 -24.07914 -22.73575 -19.06128 -18.34055 -18.12547 -17.52546 -16.82733 -16.24173 -15.68076 -14.73302 -14.53030 -14.39566 -13.94857 -13.69715 -13.33285 -13.01860 -12.95313 -12.64250 -12.29855 -11.95507 -11.90995 -11.80798 -11.70516 -11.50509 -11.34578 -11.27252 -11.13309 -10.96269 -10.75076 -10.56924 -10.50398 -10.30814 -10.07781 -9.67148 -8.68692 -8.35752 -8.19584 -6.50229 -3.98656 0.74358 1.19275 1.73846 2.04446 2.65178 3.16141 3.22725 3.23924 3.70010 4.10863 4.26840 4.39712 4.58699 4.74833 4.87455 5.04712 5.11785 5.33663 5.34617 5.41582 5.44238 5.58154 5.61942 5.77229 5.90487 5.90802 6.15044 6.32669 6.48277 6.60376 6.88370 7.41449 8.17160 8.69697 8.99376 9.09410 10.54678 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.016016 B = 0.006691 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.867758 B = 4183.965672 C = 5028.350935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.133 4.133 3 C 0.001 3.999 4 C -0.766 4.766 5 S 2.671 3.329 6 O -0.971 6.971 7 O -0.953 6.953 8 N -0.833 5.833 9 C -0.325 4.325 10 H 0.117 0.883 11 C 0.049 3.951 12 N -0.861 5.861 13 Si 0.910 3.090 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.272 1.272 17 C 0.239 3.761 18 C 0.260 3.740 19 N -0.477 5.477 20 S 0.183 5.817 21 C -0.164 4.164 22 C -0.084 4.084 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.151 0.849 27 H 0.275 0.725 28 H 0.125 0.875 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.770 -12.488 -3.068 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.146 4.146 3 C -0.033 4.033 4 C -0.962 4.962 5 S 2.757 3.243 6 O -0.961 6.961 7 O -0.943 6.943 8 N -0.665 5.665 9 C -0.456 4.456 10 H 0.134 0.866 11 C -0.158 4.158 12 N -0.500 5.500 13 Si 0.736 3.264 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.197 1.197 17 C 0.110 3.890 18 C -0.059 4.059 19 N -0.158 5.158 20 S 0.451 5.549 21 C -0.283 4.283 22 C -0.143 4.143 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.169 0.831 27 H 0.086 0.914 28 H 0.143 0.857 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.536 -12.124 -3.852 14.786 hybrid contribution -2.775 0.617 1.195 3.084 sum -10.312 -11.506 -2.657 15.678 Atomic orbital electron populations 1.20503 0.89703 1.02614 1.02316 1.19025 0.97533 0.91792 1.06296 1.19802 0.90992 0.99787 0.92681 1.36846 1.17384 1.17589 1.24336 1.03453 0.73598 0.73524 0.73711 1.93522 1.44894 1.80366 1.77284 1.93491 1.76972 1.46610 1.77257 1.53244 1.38256 1.43594 1.31386 1.19292 1.11337 1.15412 0.99591 0.86582 1.25027 0.95910 0.97269 0.97612 1.69923 1.14306 1.45497 1.20254 0.86264 0.81121 0.79405 0.79634 1.19738 1.20968 1.19718 1.18259 0.79148 0.89741 1.01894 1.28933 0.93208 0.92923 0.90830 1.80835 1.14476 1.09290 1.11156 1.83922 1.03459 0.96634 1.70934 1.24766 0.97565 0.99324 1.06682 1.20385 1.01118 0.90014 1.02771 0.91177 0.91737 0.91300 0.83121 0.91395 0.85718 0.90070 0.90562 0.91077 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 95. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 9.60 36.00 0.35 -0.58 16 2 C -0.13 -1.81 5.80 -106.25 -0.62 -2.43 16 3 C 0.00 0.02 9.64 -41.21 -0.40 -0.38 16 4 C -0.77 -13.68 6.57 29.04 0.19 -13.49 16 5 S 2.67 57.43 5.75 -107.50 -0.62 56.81 16 6 O -0.97 -22.04 16.92 -57.17 -0.97 -23.00 16 7 O -0.95 -22.71 16.67 -57.17 -0.95 -23.66 16 8 N -0.83 -18.77 2.88 -62.78 -0.18 -18.95 16 9 C -0.32 -7.78 9.37 -15.06 -0.14 -7.92 16 10 H 0.12 2.74 7.41 -52.48 -0.39 2.35 16 11 C 0.05 1.17 4.88 -17.43 -0.09 1.08 16 12 N -0.86 -21.42 9.06 55.49 0.50 -20.91 16 13 Si 0.91 18.68 29.63 -169.99 -5.04 13.64 16 14 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 15 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 17 C 0.24 5.03 5.09 -6.83 -0.03 4.99 16 18 C 0.26 6.28 13.34 -20.76 -0.28 6.01 16 19 N -0.48 -12.33 18.54 42.15 0.78 -11.55 16 20 S 0.18 2.76 23.20 -107.50 -2.49 0.26 16 21 C -0.16 -2.11 6.50 -36.00 -0.23 -2.34 16 22 C -0.08 -0.74 9.75 36.01 0.35 -0.39 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.52 7.25 -51.93 -0.38 0.15 16 25 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.15 2.32 8.05 -52.49 -0.42 1.90 16 27 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 28 H 0.13 2.55 6.45 -51.93 -0.34 2.21 16 29 H 0.08 1.41 7.69 -51.93 -0.40 1.01 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.58 7.32 -51.93 -0.38 0.20 16 LS Contribution 309.56 15.07 4.67 4.67 Total: -1.00 -30.76 309.56 -8.33 -39.09 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -3.13 Total: -0.95 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -0.90 Total: -15.44 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 1.10 Total: -51.41 kcal Atomic # 8 Polarization: -44.75 SS G_CDS: -1.92 Total: -46.67 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.04 Total: 13.64 kcal Atomic # 16 Polarization: 60.18 SS G_CDS: -3.11 Total: 57.07 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.76 -8.33 -39.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271399708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.562 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds