Wall clock time and date at job start Tue Mar 31 2020 07:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47092 * 236.87393 * 3 2 1 5 5 N 1.46498 * 109.47453 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99751 * 275.00128 * 5 4 3 7 7 C 1.50694 * 109.47296 * 274.99618 * 6 5 4 8 8 H 1.08001 * 119.99929 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00210 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00037 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00120 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47050 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47135 * 119.99838 * 11 9 7 14 14 H 1.48498 * 109.47111 * 240.00259 * 11 9 7 15 15 S 1.65594 * 120.00066 * 94.99752 * 5 4 3 16 16 O 1.42110 * 106.40211 * 156.46120 * 15 5 4 17 17 O 1.42099 * 106.40373 * 23.54560 * 15 5 4 18 18 C 1.76201 * 107.21970 * 269.99962 * 15 5 4 19 19 C 1.38425 * 122.53543 * 90.00065 * 18 15 5 20 20 C 1.33390 * 114.92123 * 179.97438 * 19 18 15 21 21 S 1.75891 * 109.59251 * 0.02562 * 20 19 18 22 22 C 1.33383 * 122.54282 * 269.97634 * 18 15 5 23 23 H 1.09004 * 109.47245 * 116.87549 * 3 2 1 24 24 H 1.09000 * 109.47390 * 356.87579 * 3 2 1 25 25 H 1.09004 * 109.46949 * 59.99974 * 4 3 2 26 26 H 1.09000 * 109.47155 * 300.00329 * 4 3 2 27 27 H 1.09000 * 109.47130 * 34.99860 * 6 5 4 28 28 H 1.09004 * 109.47014 * 154.99800 * 6 5 4 29 29 H 0.97001 * 120.00263 * 179.97438 * 10 9 7 30 30 H 1.07997 * 122.54292 * 359.71431 * 19 18 15 31 31 H 1.08003 * 125.20243 * 179.97438 * 20 19 18 32 32 H 1.08000 * 125.20529 * 0.06457 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.7892 1.2080 5 7 4.5826 0.7904 1.2078 6 6 5.3161 -0.3280 1.8056 7 6 5.4601 -0.0992 3.2881 8 1 5.0463 0.7902 3.7399 9 6 6.1202 -1.0252 4.0676 10 7 6.6246 -2.1080 3.5174 11 14 6.2982 -0.7419 5.9055 12 1 5.6489 0.5419 6.2735 13 1 5.6486 -1.8550 6.6431 14 1 7.7390 -0.6869 6.2606 15 16 5.4094 2.0559 0.5317 16 8 6.6925 2.0689 1.1424 17 8 4.5269 3.1694 0.5539 18 6 5.6702 1.6613 -1.1656 19 6 4.7693 2.0083 -2.1576 20 6 5.1185 1.6349 -3.3896 21 16 6.6632 0.7954 -3.3360 22 6 6.7509 1.0060 -1.5920 23 1 2.9711 0.4654 -0.9167 24 1 2.9718 -1.0253 0.0560 25 1 2.7544 0.3245 2.1247 26 1 2.7538 1.8151 1.1520 27 1 4.7694 -1.2550 1.6324 28 1 6.3043 -0.3987 1.3511 29 1 7.0893 -2.7593 4.0658 30 1 3.8512 2.5375 -1.9493 31 1 4.5406 1.8190 -4.2833 32 1 7.5561 0.6570 -0.9626 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285059424.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:17 Heat of formation + Delta-G solvation = -9.816161 kcal Electronic energy + Delta-G solvation = -20088.257570 eV Core-core repulsion = 16882.177488 eV Total energy + Delta-G solvation = -3206.080082 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.039 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -37.81371 -37.21337 -36.70402 -35.74807 -35.29352 -32.80962 -30.76032 -29.76901 -27.00190 -24.63302 -23.83828 -22.18018 -20.30270 -18.35683 -18.07010 -17.44784 -16.89832 -16.53237 -16.34684 -15.46848 -14.74288 -14.51166 -14.21111 -13.89529 -13.49813 -13.35056 -13.10375 -12.74224 -12.65593 -12.51272 -12.36092 -11.99281 -11.72485 -11.64486 -11.46118 -11.35802 -11.15896 -10.97314 -10.65678 -10.62204 -10.48243 -10.08746 -9.85906 -9.20060 -8.79493 -8.51760 -8.29570 -6.14223 -4.18091 0.62538 0.82380 1.55947 1.82465 2.20280 2.81981 2.88575 3.28171 3.36574 3.41030 3.54687 4.17232 4.24755 4.40031 4.66728 4.98438 5.09365 5.15014 5.21177 5.22324 5.40534 5.53953 5.67478 5.76511 5.96437 6.16636 6.18702 6.33609 7.05201 7.22820 7.40553 7.65027 7.83474 8.09564 8.84817 9.48149 10.94380 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.013220 B = 0.006155 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.438541 B = 4547.702934 C = 5602.999056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.220 3.780 3 C -0.056 4.056 4 C 0.127 3.873 5 N -0.977 5.977 6 C 0.253 3.747 7 C -0.530 4.530 8 H 0.064 0.936 9 C 0.064 3.936 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.282 1.282 15 S 2.697 3.303 16 O -0.937 6.937 17 O -0.969 6.969 18 C -0.688 4.688 19 C -0.073 4.073 20 C -0.225 4.225 21 S 0.123 5.877 22 C -0.078 4.078 23 H 0.102 0.898 24 H 0.119 0.881 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.264 0.736 30 H 0.153 0.847 31 H 0.169 0.831 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.168 3.840 -13.472 14.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.098 4.098 3 C -0.098 4.098 4 C -0.002 4.002 5 N -0.815 5.815 6 C 0.131 3.869 7 C -0.570 4.570 8 H 0.082 0.918 9 C -0.138 4.138 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.208 1.208 15 S 2.783 3.217 16 O -0.927 6.927 17 O -0.960 6.960 18 C -0.785 4.785 19 C -0.102 4.102 20 C -0.360 4.360 21 S 0.386 5.614 22 C -0.217 4.217 23 H 0.120 0.880 24 H 0.137 0.863 25 H 0.119 0.881 26 H 0.109 0.891 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.170 0.830 31 H 0.186 0.814 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.553 3.740 -14.157 14.725 hybrid contribution -0.245 0.128 1.284 1.313 sum -1.798 3.868 -12.873 13.561 Atomic orbital electron populations 1.81192 1.13013 1.09286 1.08882 1.29040 0.95043 0.92791 0.92955 1.19963 0.81613 1.05847 1.02361 1.21113 0.80542 1.01023 0.97519 1.57491 1.13023 1.40726 1.70295 1.19201 0.91177 0.83121 0.93373 1.21497 1.36249 1.06723 0.92495 0.91822 1.24902 0.95011 0.94920 0.98997 1.69907 1.37149 1.10303 1.35993 0.86473 0.78033 0.78267 0.84891 1.19559 1.20995 1.20814 1.02060 0.73824 0.73217 0.72619 1.93618 1.39996 1.85796 1.73264 1.93508 1.66396 1.49186 1.86861 1.30544 1.03508 1.16197 1.28227 1.19750 0.99939 0.99912 0.90618 1.25716 1.00740 1.07788 1.01786 1.84268 1.18605 1.54439 1.04134 1.25856 1.00197 0.97233 0.98369 0.87952 0.86270 0.88079 0.89099 0.94084 0.94020 0.92666 0.82972 0.81393 0.79708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.93 18.54 42.15 0.78 -6.14 16 2 C 0.22 2.87 15.43 -20.76 -0.32 2.55 16 3 C -0.06 -0.63 6.02 -29.52 -0.18 -0.81 16 4 C 0.13 1.81 5.63 -4.04 -0.02 1.78 16 5 N -0.98 -17.03 2.77 -115.66 -0.32 -17.35 16 6 C 0.25 5.45 5.10 -5.20 -0.03 5.43 16 7 C -0.53 -13.51 9.38 -34.44 -0.32 -13.84 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 11 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 S 2.70 47.11 5.71 -107.50 -0.61 46.50 16 16 O -0.94 -19.93 16.61 -57.17 -0.95 -20.88 16 17 O -0.97 -17.74 16.19 -57.17 -0.93 -18.66 16 18 C -0.69 -9.60 5.89 -41.21 -0.24 -9.84 16 19 C -0.07 -0.86 8.74 -41.21 -0.36 -1.22 16 20 C -0.22 -2.24 11.23 29.04 0.33 -1.92 16 21 S 0.12 1.26 23.34 -107.50 -2.51 -1.25 16 22 C -0.08 -1.01 10.70 29.04 0.31 -0.70 16 23 H 0.10 0.97 7.13 -51.93 -0.37 0.60 16 24 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.10 1.49 8.11 -51.93 -0.42 1.07 16 26 H 0.09 1.23 6.91 -51.93 -0.36 0.87 16 27 H 0.04 0.88 8.11 -51.93 -0.42 0.45 16 28 H 0.04 0.95 7.61 -51.93 -0.40 0.55 16 29 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.15 1.59 7.97 -52.49 -0.42 1.17 16 31 H 0.17 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.19 2.33 8.00 -52.49 -0.42 1.91 16 LS Contribution 317.06 15.07 4.78 4.78 Total: -1.00 -31.76 317.06 -8.17 -39.94 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -3.20 Total: -2.10 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -0.93 Total: -16.97 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 1.20 Total: -47.06 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -1.88 Total: -39.54 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 48.38 SS G_CDS: -3.12 Total: 45.26 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.76 -8.17 -39.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285059424.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.120 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds