Wall clock time and date at job start Tue Mar 31 2020 07:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33394 * 125.20361 * 2 1 4 4 C 1.38421 * 114.92108 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.53939 * 179.97438 * 4 3 2 6 6 C 1.33396 * 114.92087 * 0.25595 * 4 3 2 7 7 S 1.76200 * 125.20199 * 179.75417 * 6 4 3 8 8 O 1.42092 * 106.40016 * 200.56727 * 7 6 4 9 9 O 1.42106 * 106.39958 * 333.48296 * 7 6 4 10 10 N 1.65595 * 107.22150 * 87.02408 * 7 6 4 11 11 C 1.36933 * 120.00118 * 89.99576 * 10 7 6 12 12 H 1.08004 * 119.99883 * 5.38304 * 11 10 7 13 13 C 1.38811 * 120.00294 * 185.37990 * 11 10 7 14 14 N 1.31615 * 120.00103 * 27.22907 * 13 11 10 15 15 Si 1.86806 * 119.99967 * 207.23049 * 13 11 10 16 16 H 1.48495 * 109.47086 * 94.99259 * 15 13 11 17 17 H 1.48504 * 109.46998 * 214.99168 * 15 13 11 18 18 H 1.48499 * 109.47162 * 334.98655 * 15 13 11 19 19 C 1.46497 * 120.00056 * 270.00474 * 10 7 6 20 20 C 1.47193 * 109.47680 * 93.97996 * 19 10 7 21 21 N 5.12191 * 133.12591 * 67.65826 * 2 1 3 22 22 S 1.75880 * 125.20376 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.47068 * 90.00193 * 1 2 3 24 24 H 1.08993 * 109.47462 * 209.99638 * 1 2 3 25 25 H 1.09007 * 109.47359 * 330.00256 * 1 2 3 26 26 H 1.07995 * 122.53789 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.46489 * 95.76091 * 5 4 3 28 28 H 1.08996 * 109.46788 * 335.76039 * 5 4 3 29 29 H 1.08995 * 109.46831 * 215.75727 * 5 4 3 30 30 H 0.97006 * 120.00053 * 180.02562 * 14 13 11 31 31 H 1.09004 * 109.47126 * 213.98377 * 19 10 7 32 32 H 1.09004 * 109.47497 * 333.97449 * 19 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6379 0.8429 0.0006 5 6 4.6623 1.9483 0.0001 6 6 3.9751 -0.4478 -0.0044 7 16 5.6248 -1.0666 -0.0112 8 8 5.5507 -2.4010 -0.4939 9 8 6.4271 -0.0636 -0.6192 10 7 6.1174 -1.1668 1.5666 11 6 5.9052 -2.3171 2.2784 12 1 5.4963 -3.1881 1.7878 13 6 6.2157 -2.3640 3.6306 14 7 6.1930 -1.2618 4.3496 15 14 6.6660 -3.9914 4.4297 16 1 8.1431 -4.1420 4.4476 17 1 6.1486 -4.0193 5.8214 18 1 6.0639 -5.1063 3.6554 19 6 6.7800 -0.0246 2.2010 20 6 5.7805 0.7910 2.9099 21 7 5.0083 1.4210 3.4576 22 16 2.5209 -1.4371 0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5137 25 1 -0.3634 0.8901 0.5138 26 1 1.8669 2.0895 -0.0004 27 1 4.9846 2.1453 1.0225 28 1 4.2221 2.8513 -0.4226 29 1 5.5211 1.6475 -0.6000 30 1 6.4103 -1.2945 5.2944 31 1 7.5246 -0.3848 2.9109 32 1 7.2688 0.5816 1.4382 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292457038.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:26 Heat of formation + Delta-G solvation = -2.160182 kcal Electronic energy + Delta-G solvation = -20724.706035 eV Core-core repulsion = 17518.957941 eV Total energy + Delta-G solvation = -3205.748094 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.039 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -37.96138 -36.78000 -36.00815 -34.64948 -34.50401 -32.42167 -31.82147 -27.93645 -27.55009 -26.48347 -24.18185 -21.37228 -19.51958 -18.66330 -17.85221 -17.01055 -16.76028 -16.20237 -15.11591 -14.77389 -14.52070 -13.99698 -13.86202 -13.68245 -13.21959 -12.94700 -12.76135 -12.68127 -12.40228 -11.87246 -11.74196 -11.54236 -11.46215 -11.41719 -11.28419 -11.12209 -10.92870 -10.67661 -10.59670 -10.32123 -10.28368 -10.17771 -10.01547 -9.74304 -8.60549 -8.36978 -7.82175 -6.84797 -4.14585 1.09104 1.52389 2.10225 2.42941 2.97688 3.02264 3.10444 3.16117 3.65434 3.90798 4.07712 4.43789 4.52238 4.86232 4.96310 5.27157 5.33406 5.52475 5.53718 5.60648 5.80971 5.85209 5.92200 6.03743 6.17199 6.38575 6.41805 6.49167 6.79581 6.84383 6.98313 7.11138 7.98146 8.37630 8.79797 8.81642 10.14690 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.007209 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.779072 B = 3882.847815 C = 4050.772148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.174 4.174 3 C -0.158 4.158 4 C 0.013 3.987 5 C -0.142 4.142 6 C -0.758 4.758 7 S 2.557 3.443 8 O -0.974 6.974 9 O -0.985 6.985 10 N -0.793 5.793 11 C -0.246 4.246 12 H 0.128 0.872 13 C 0.032 3.968 14 N -0.832 5.832 15 Si 0.936 3.064 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.261 1.261 19 C 0.222 3.778 20 C 0.242 3.758 21 N -0.473 5.473 22 S 0.181 5.819 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.133 0.867 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.114 0.886 30 H 0.282 0.718 31 H 0.133 0.867 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 1.519 -3.695 5.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.294 4.294 3 C -0.189 4.189 4 C -0.002 4.002 5 C -0.201 4.201 6 C -0.951 4.951 7 S 2.653 3.347 8 O -0.964 6.964 9 O -0.975 6.975 10 N -0.616 5.616 11 C -0.393 4.393 12 H 0.146 0.854 13 C -0.180 4.180 14 N -0.471 5.471 15 Si 0.761 3.239 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.185 1.185 19 C 0.092 3.908 20 C -0.077 4.077 21 N -0.153 5.153 22 S 0.448 5.552 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.151 0.849 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.093 0.907 31 H 0.150 0.850 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.220 0.832 -3.729 5.692 hybrid contribution -0.349 0.994 0.813 1.331 sum -4.569 1.827 -2.916 5.720 Atomic orbital electron populations 1.20333 0.88168 1.03035 1.02452 1.24863 0.99942 0.97788 1.06759 1.20102 0.92928 0.98924 1.06987 1.18459 0.94470 0.93088 0.94192 1.21293 0.99161 0.95592 1.04052 1.36966 1.29259 1.05345 1.23539 1.10672 0.73431 0.73089 0.77476 1.93381 1.86664 1.35663 1.80658 1.93279 1.67366 1.59686 1.77181 1.55564 1.57882 1.16000 1.32203 1.20259 1.39182 0.86583 0.93311 0.85423 1.25587 0.96984 0.99654 0.95766 1.69975 1.40487 1.28117 1.08554 0.85721 0.79475 0.80565 0.78146 1.19431 1.20692 1.18498 1.19080 0.90927 0.84867 0.95921 1.29517 0.94594 0.91337 0.92280 1.80926 1.09844 1.13794 1.10748 1.83838 0.93753 1.06846 1.70760 0.90816 0.91298 0.90806 0.84921 0.90653 0.91807 0.86780 0.90668 0.84966 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.38 36.00 0.37 -0.63 16 2 C -0.17 -2.95 6.51 -36.00 -0.23 -3.19 16 3 C -0.16 -2.81 9.83 -41.21 -0.41 -3.22 16 4 C 0.01 0.25 5.80 -106.24 -0.62 -0.36 16 5 C -0.14 -2.58 9.64 36.01 0.35 -2.23 16 6 C -0.76 -16.12 6.57 29.04 0.19 -15.93 16 7 S 2.56 57.01 5.63 -107.50 -0.61 56.40 16 8 O -0.97 -23.80 16.66 -57.17 -0.95 -24.75 16 9 O -0.99 -21.77 13.44 -57.17 -0.77 -22.54 16 10 N -0.79 -17.44 2.88 -62.78 -0.18 -17.62 16 11 C -0.25 -5.61 9.45 -15.06 -0.14 -5.75 16 12 H 0.13 2.93 7.25 -52.48 -0.38 2.55 16 13 C 0.03 0.71 4.89 -17.43 -0.09 0.62 16 14 N -0.83 -18.76 9.03 55.49 0.50 -18.26 16 15 Si 0.94 17.44 29.63 -169.99 -5.04 12.40 16 16 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 17 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 19 C 0.22 4.42 5.46 -6.83 -0.04 4.38 16 20 C 0.24 5.26 11.61 -20.72 -0.24 5.02 16 21 N -0.47 -10.99 18.21 42.20 0.77 -10.22 16 22 S 0.18 3.49 23.17 -107.50 -2.49 1.00 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 26 H 0.13 2.02 8.06 -52.49 -0.42 1.59 16 27 H 0.07 1.41 5.90 -51.93 -0.31 1.10 16 28 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 29 H 0.11 2.14 5.21 -51.93 -0.27 1.87 16 30 H 0.28 6.07 8.31 -40.82 -0.34 5.74 16 31 H 0.13 2.54 6.44 -51.93 -0.33 2.21 16 32 H 0.10 1.77 6.93 -51.93 -0.36 1.41 16 LS Contribution 300.76 15.07 4.53 4.53 Total: -1.00 -28.11 300.76 -7.98 -36.09 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -2.90 Total: 4.25 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -0.85 Total: -21.29 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 1.09 Total: -46.10 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -1.72 Total: -47.29 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.04 Total: 12.40 kcal Atomic # 16 Polarization: 60.50 SS G_CDS: -3.10 Total: 57.40 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.11 -7.98 -36.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292457038.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.931 kcal (2) G-P(sol) polarization free energy of solvation -28.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds