Wall clock time and date at job start Tue Mar 31 2020 07:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99695 * 2 1 4 4 H 1.48504 * 109.46819 * 270.00022 * 3 2 1 5 5 H 1.48492 * 109.47137 * 30.00508 * 3 2 1 6 6 H 1.48497 * 109.46769 * 150.00414 * 3 2 1 7 7 C 1.37878 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99800 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00111 * 179.97438 * 7 2 1 10 10 S 1.81397 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.81401 * 102.99785 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47002 * 179.97438 * 11 10 9 13 13 C 1.38236 * 119.95156 * 89.99881 * 12 11 10 14 14 C 1.38647 * 120.08153 * 180.02562 * 13 12 11 15 15 C 1.39007 * 119.84556 * 359.86878 * 14 13 12 16 16 C 1.38659 * 119.83429 * 0.17716 * 15 14 13 17 17 C 1.38318 * 119.94947 * 269.72656 * 12 11 10 18 18 Cl 1.73598 * 119.95522 * 0.02694 * 17 12 11 19 19 O 1.36104 * 120.78326 * 180.23505 * 15 14 13 20 20 C 1.43175 * 116.69625 * 342.62625 * 19 15 14 21 21 C 1.53465 * 108.23698 * 46.28594 * 20 19 15 22 22 O 1.36142 * 119.39099 * 179.63875 * 14 13 12 23 23 H 0.96998 * 120.00518 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46640 * 60.00582 * 9 7 2 25 25 H 1.09000 * 109.47094 * 300.01049 * 9 7 2 26 26 H 1.09002 * 109.47085 * 299.99903 * 11 10 9 27 27 H 1.09001 * 109.47417 * 60.00029 * 11 10 9 28 28 H 1.08001 * 119.95587 * 359.97438 * 13 12 11 29 29 H 1.07993 * 119.97658 * 179.91882 * 16 15 14 30 30 H 1.09002 * 109.70744 * 165.97201 * 20 19 15 31 31 H 1.09000 * 109.70834 * 286.60003 * 20 19 15 32 32 H 1.09008 * 109.70757 * 59.94926 * 21 20 19 33 33 H 1.09002 * 109.71107 * 180.56537 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 16 4.1162 -2.9043 0.0001 11 6 5.9187 -2.6998 0.0001 12 6 6.5780 -4.0549 0.0009 13 6 6.8800 -4.6762 -1.1965 14 6 7.4861 -5.9232 -1.1989 15 6 7.7918 -6.5461 0.0055 16 6 7.4858 -5.9189 1.2037 17 6 6.8851 -4.6727 1.1997 18 17 6.5100 -3.8864 2.7012 19 8 8.3911 -7.7679 0.0254 20 6 8.3390 -8.5297 -1.1858 21 6 8.7114 -7.6039 -2.3517 22 8 7.7706 -6.5254 -2.3863 23 1 -0.4851 0.8400 0.0004 24 1 3.8752 -0.6797 0.8896 25 1 3.8746 -0.6806 -0.8904 26 1 6.2218 -2.1483 -0.8899 27 1 6.2218 -2.1482 0.8901 28 1 6.6428 -4.1899 -2.1312 29 1 7.7212 -6.4013 2.1408 30 1 9.0481 -9.3557 -1.1313 31 1 7.3313 -8.9185 -1.3324 32 1 9.7167 -7.2100 -2.2017 33 1 8.6695 -8.1584 -3.2892 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413012541.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:20 Heat of formation + Delta-G solvation = -59.310585 kcal Electronic energy + Delta-G solvation = -18982.990962 eV Core-core repulsion = 15740.428183 eV Total energy + Delta-G solvation = -3242.562779 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.037 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.49295 -38.43967 -37.50997 -36.22078 -33.02101 -32.59971 -30.99255 -29.49784 -29.28618 -26.70529 -24.58331 -23.04857 -22.40769 -20.75444 -18.87286 -17.68696 -17.50284 -16.88483 -15.86031 -15.61477 -15.31534 -14.92077 -14.81626 -14.66829 -14.21849 -14.10824 -13.62924 -13.28098 -13.15033 -12.65278 -12.52387 -12.18265 -12.16528 -11.97575 -11.39728 -10.91731 -10.88997 -10.78243 -10.67417 -10.38997 -10.06130 -9.66188 -8.99926 -8.70147 -8.69498 -8.08143 -6.77107 -6.16334 -4.18321 0.89659 1.01323 2.06670 2.51425 2.75513 3.01469 3.22329 3.29819 3.31026 3.51760 3.68128 3.88691 4.32362 4.34738 4.46224 4.55072 4.71046 4.78023 5.00813 5.08336 5.14768 5.15006 5.29910 5.60035 5.71397 5.77025 5.90683 6.14164 6.28816 6.59006 6.59741 6.71599 7.12238 7.44380 8.32024 8.86761 9.39339 10.95786 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.024687 B = 0.003593 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.948971 B = 7791.872998 C = 8409.042646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.080 3.920 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.512 4.512 8 H 0.084 0.916 9 C 0.044 3.956 10 S -0.247 6.247 11 C -0.068 4.068 12 C -0.040 4.040 13 C -0.087 4.087 14 C 0.056 3.944 15 C 0.057 3.943 16 C -0.105 4.105 17 C -0.019 4.019 18 Cl -0.046 7.046 19 O -0.305 6.305 20 C 0.020 3.980 21 C 0.020 3.980 22 O -0.303 6.303 23 H 0.268 0.732 24 H 0.035 0.965 25 H 0.030 0.970 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.147 0.853 29 H 0.145 0.855 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.072 -14.547 -1.860 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.125 4.125 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.102 0.898 9 C -0.104 4.104 10 S -0.018 6.018 11 C -0.215 4.215 12 C -0.042 4.042 13 C -0.107 4.107 14 C 0.011 3.989 15 C 0.011 3.989 16 C -0.124 4.124 17 C -0.048 4.048 18 Cl -0.017 7.017 19 O -0.220 6.220 20 C -0.056 4.056 21 C -0.056 4.056 22 O -0.217 6.217 23 H 0.078 0.922 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.165 0.835 29 H 0.163 0.837 30 H 0.140 0.860 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 20.285 -15.305 -1.754 25.471 hybrid contribution 1.058 1.884 -0.015 2.161 sum 21.343 -13.421 -1.768 25.273 Atomic orbital electron populations 1.69865 1.06148 1.27258 1.49675 1.24854 0.94738 0.98691 0.94186 0.86815 0.80364 0.83639 0.78783 1.19896 1.20825 1.19024 1.20468 0.86900 0.95291 1.52476 0.89825 1.21449 1.01076 0.88767 0.99097 1.87004 0.98296 1.18555 1.97899 1.22315 0.98229 0.95178 1.05789 1.18921 0.98276 0.96292 0.90757 1.20221 1.00099 0.91764 0.98629 1.18810 1.02287 0.93732 0.84055 1.18552 1.00850 0.86725 0.92796 1.20105 1.01177 0.94129 0.96989 1.20326 1.02646 0.94168 0.87672 1.98386 1.92983 1.79658 1.30695 1.86298 1.73046 1.26647 1.35968 1.23660 1.04162 0.94051 0.83680 1.23645 0.92660 0.88203 1.01057 1.86353 1.60250 1.47753 1.27354 0.92243 0.94635 0.95153 0.89363 0.88966 0.83505 0.83702 0.85971 0.90216 0.90429 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.96 55.43 0.77 -26.37 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.51 -14.74 9.68 -34.44 -0.33 -15.07 16 8 H 0.08 2.65 7.96 -52.49 -0.42 2.23 16 9 C 0.04 1.06 4.77 36.01 0.17 1.24 16 10 S -0.25 -5.24 21.64 -107.50 -2.33 -7.57 16 11 C -0.07 -1.11 5.67 36.01 0.20 -0.90 16 12 C -0.04 -0.60 5.14 -104.59 -0.54 -1.14 16 13 C -0.09 -1.19 9.61 -39.43 -0.38 -1.57 16 14 C 0.06 0.73 6.49 -39.15 -0.25 0.48 16 15 C 0.06 0.71 6.49 -39.14 -0.25 0.46 16 16 C -0.10 -1.34 9.74 -39.39 -0.38 -1.72 16 17 C -0.02 -0.27 6.31 -39.52 -0.25 -0.52 16 18 Cl -0.05 -0.66 27.27 -51.86 -1.41 -2.08 16 19 O -0.30 -3.32 10.42 -32.85 -0.34 -3.66 16 20 C 0.02 0.14 7.26 37.40 0.27 0.41 16 21 C 0.02 0.14 7.26 37.40 0.27 0.41 16 22 O -0.30 -3.48 10.42 -32.97 -0.34 -3.82 16 23 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.04 0.85 7.20 -51.92 -0.37 0.48 16 25 H 0.03 0.71 7.57 -51.92 -0.39 0.31 16 26 H 0.09 1.30 8.09 -51.92 -0.42 0.88 16 27 H 0.09 1.47 6.88 -51.92 -0.36 1.11 16 28 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 310.52 15.07 4.68 4.68 Total: -1.00 -32.17 310.52 -8.88 -41.05 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -3.66 Total: -2.89 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -1.57 Total: -15.74 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.77 Total: -26.37 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.69 Total: -7.48 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -2.33 Total: -7.57 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.41 Total: -2.08 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.17 -8.88 -41.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413012541.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.261 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds