Wall clock time and date at job start Tue Mar 31 2020 07:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34721 * 117.00052 * 2 1 4 4 O 1.21476 * 119.99999 * 0.02562 * 3 2 1 5 5 C 1.47663 * 119.99820 * 180.02562 * 3 2 1 6 6 C 1.39690 * 120.13667 * 359.97438 * 5 3 2 7 7 C 1.37850 * 119.86305 * 180.02562 * 6 5 3 8 8 C 1.38546 * 120.13970 * 0.02562 * 7 6 5 9 9 Cl 1.73597 * 119.86518 * 179.97438 * 8 7 6 10 10 C 1.38502 * 120.26982 * 359.97438 * 8 7 6 11 11 C 1.50703 * 119.93040 * 179.97438 * 10 8 7 12 12 S 1.81401 * 109.47002 * 89.99626 * 11 10 8 13 13 C 1.81397 * 102.99785 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47105 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00088 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00111 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00216 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99927 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47281 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47334 * 119.99837 * 18 16 14 21 21 H 1.48500 * 109.47304 * 239.99320 * 18 16 14 22 22 C 1.37903 * 120.13908 * 0.27164 * 10 8 7 23 23 H 1.09001 * 109.47170 * 59.99252 * 1 2 3 24 24 H 1.08997 * 109.47396 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47122 * 299.99623 * 1 2 3 26 26 H 1.08005 * 120.06685 * 359.97438 * 6 5 3 27 27 H 1.08008 * 119.93215 * 180.02562 * 7 6 5 28 28 H 1.09002 * 109.47152 * 329.99726 * 11 10 8 29 29 H 1.09001 * 109.46980 * 209.99827 * 11 10 8 30 30 H 1.09004 * 109.47371 * 299.99984 * 13 12 11 31 31 H 1.09000 * 109.47527 * 60.00229 * 13 12 11 32 32 H 0.96993 * 120.00403 * 180.02562 * 17 16 14 33 33 H 1.07998 * 120.06790 * 179.73125 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2192 0.0005 5 6 3.5382 1.2776 -0.0006 6 6 4.3018 0.1078 -0.0006 7 6 5.6780 0.1865 -0.0006 8 6 6.3042 1.4224 0.0000 9 17 8.0378 1.5132 0.0006 10 6 5.5527 2.5858 0.0000 11 6 6.2417 3.9261 0.0011 12 16 6.5195 4.4646 -1.7087 13 6 7.3428 6.0678 -1.5028 14 6 7.6447 6.6551 -2.8574 15 1 7.3692 6.1175 -3.7527 16 6 8.2734 7.8784 -2.9539 17 7 8.6093 8.5330 -1.8638 18 14 8.6483 8.6060 -4.6331 19 1 8.1731 7.6790 -5.6915 20 1 7.9567 9.9128 -4.7719 21 1 10.1135 8.8044 -4.7707 22 6 4.1752 2.5203 0.0051 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.8148 -0.8562 0.0003 27 1 6.2695 -0.7172 -0.0010 28 1 7.1989 3.8421 0.5157 29 1 5.6159 4.6559 0.5148 30 1 6.6890 6.7439 -0.9516 31 1 8.2724 5.9307 -0.9505 32 1 9.0513 9.3937 -1.9317 33 1 3.5903 3.4282 0.0095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013920.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:55 Heat of formation + Delta-G solvation = -78.892975 kcal Electronic energy + Delta-G solvation = -18525.591292 eV Core-core repulsion = 15282.179357 eV Total energy + Delta-G solvation = -3243.411935 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.037 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.79002 -39.24849 -36.72349 -36.40561 -33.17401 -33.11716 -31.37171 -28.57609 -28.16895 -27.00744 -24.27643 -23.13583 -22.17895 -20.86734 -17.96380 -17.43923 -16.60286 -16.58970 -16.47560 -15.75419 -15.38668 -14.80025 -14.60135 -13.94795 -13.90523 -13.56810 -13.26768 -13.05259 -12.53440 -12.49419 -12.45631 -12.18435 -11.95524 -11.60311 -11.53825 -11.06978 -10.89697 -10.86439 -10.77211 -10.64611 -10.21862 -9.58825 -9.12221 -8.95302 -8.69393 -8.61725 -6.69597 -6.19341 -4.23364 0.33908 0.98094 2.02362 2.17389 2.40038 2.71294 3.25551 3.32775 3.39022 3.55354 3.81544 4.36005 4.40767 4.50315 4.55270 4.82285 4.91095 4.92079 5.01277 5.18035 5.19295 5.28535 5.42340 5.65836 5.79940 5.90822 5.96796 6.04315 6.18832 6.42980 7.09285 7.11036 7.49537 7.75473 8.00900 8.78700 9.39735 10.92000 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.017928 B = 0.003500 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.442052 B = 7997.506102 C = 9126.149143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.511 3.489 4 O -0.500 6.500 5 C -0.127 4.127 6 C -0.056 4.056 7 C -0.125 4.125 8 C 0.010 3.990 9 Cl -0.044 7.044 10 C -0.056 4.056 11 C -0.064 4.064 12 S -0.285 6.285 13 C 0.089 3.911 14 C -0.510 4.510 15 H 0.068 0.932 16 C 0.065 3.935 17 N -0.893 5.893 18 Si 0.906 3.094 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.027 4.027 23 H 0.065 0.935 24 H 0.102 0.898 25 H 0.064 0.936 26 H 0.146 0.854 27 H 0.143 0.857 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.265 0.735 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.309 -19.465 7.189 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.356 3.644 4 O -0.388 6.388 5 C -0.128 4.128 6 C -0.075 4.075 7 C -0.143 4.143 8 C -0.019 4.019 9 Cl -0.014 7.014 10 C -0.058 4.058 11 C -0.211 4.211 12 S -0.056 6.056 13 C -0.058 4.058 14 C -0.550 4.550 15 H 0.086 0.914 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.733 3.267 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.047 4.047 23 H 0.083 0.917 24 H 0.121 0.879 25 H 0.082 0.918 26 H 0.164 0.836 27 H 0.161 0.839 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.549 -19.481 6.317 23.037 hybrid contribution 0.534 1.217 0.306 1.364 sum -10.015 -18.264 6.623 21.857 Atomic orbital electron populations 1.23294 0.75829 1.03763 1.02814 1.86527 1.23670 1.32597 1.84472 1.21106 0.88962 0.81510 0.72837 1.90867 1.66663 1.35946 1.45315 1.19057 0.89144 0.94792 1.09812 1.21339 0.92882 0.98155 0.95097 1.21000 0.94502 0.96435 1.02390 1.21195 0.85952 0.94377 1.00364 1.98408 1.08367 1.98529 1.96128 1.19215 0.92698 0.93703 1.00223 1.22284 1.03182 0.94804 1.00840 1.86855 1.80490 1.31462 1.06787 1.21091 0.96659 0.86708 1.01305 1.20701 1.39381 1.03823 0.91084 0.91414 1.24960 0.95110 0.96362 0.97426 1.69959 1.40584 1.14879 1.27684 0.86302 0.78054 0.78999 0.83349 1.19399 1.20724 1.20740 1.21124 0.92963 0.97399 0.93210 0.91663 0.87934 0.91764 0.83647 0.83923 0.88906 0.89236 0.94541 0.94504 0.92552 0.83300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.59 9.82 -40.55 -0.40 -3.98 16 3 C 0.51 6.42 7.90 34.58 0.27 6.69 16 4 O -0.50 -7.59 16.14 -19.25 -0.31 -7.90 16 5 C -0.13 -1.55 5.87 -104.98 -0.62 -2.17 16 6 C -0.06 -0.55 9.61 -39.18 -0.38 -0.93 16 7 C -0.12 -1.30 9.81 -39.61 -0.39 -1.68 16 8 C 0.01 0.13 6.32 -39.37 -0.25 -0.12 16 9 Cl -0.04 -0.60 27.27 -51.86 -1.41 -2.01 16 10 C -0.06 -0.83 5.14 -104.65 -0.54 -1.36 16 11 C -0.06 -1.08 5.66 36.01 0.20 -0.88 16 12 S -0.28 -6.16 21.64 -107.50 -2.33 -8.49 16 13 C 0.09 2.31 5.70 36.01 0.21 2.51 16 14 C -0.51 -14.44 9.13 -34.44 -0.31 -14.75 16 15 H 0.07 1.93 7.71 -52.49 -0.40 1.52 16 16 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 17 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 18 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.03 -0.37 9.24 -39.18 -0.36 -0.73 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.15 1.07 7.61 -52.48 -0.40 0.67 16 27 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 28 H 0.09 1.54 6.89 -51.92 -0.36 1.18 16 29 H 0.09 1.43 8.08 -51.92 -0.42 1.01 16 30 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16 31 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.15 2.11 7.65 -52.49 -0.40 1.71 16 LS Contribution 324.42 15.07 4.89 4.89 Total: -1.00 -31.36 324.42 -8.69 -40.06 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: -3.65 Total: -3.40 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.19 Total: -10.36 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.74 Total: -25.27 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.71 Total: -11.89 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -6.16 SS G_CDS: -2.33 Total: -8.49 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.41 Total: -2.01 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.36 -8.69 -40.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013920.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.838 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds