Wall clock time and date at job start Tue Mar 31 2020 07:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 116.99947 * 2 1 4 4 O 1.20822 * 120.00090 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99997 * 179.72219 * 3 2 1 6 6 H 1.08991 * 109.47365 * 190.00099 * 5 3 2 7 7 S 1.81406 * 109.46964 * 69.99999 * 5 3 2 8 8 C 1.81401 * 102.99775 * 65.00249 * 7 5 3 9 9 C 1.50700 * 109.47014 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00094 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99897 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00156 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99940 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47179 * 60.00230 * 13 11 9 15 15 H 1.48500 * 109.47169 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46959 * 300.00300 * 13 11 9 17 17 C 1.50693 * 109.47236 * 310.00386 * 5 3 2 18 18 C 1.38265 * 119.99638 * 59.72213 * 17 5 3 19 19 C 1.38224 * 120.02882 * 179.77255 * 18 17 5 20 20 C 1.38237 * 120.01253 * 0.50417 * 19 18 17 21 21 C 1.38335 * 119.98258 * 359.74766 * 20 19 18 22 22 Cl 1.73603 * 120.00796 * 180.02562 * 21 20 19 23 23 C 1.38197 * 119.99610 * 239.99738 * 17 5 3 24 24 H 1.08997 * 109.46765 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46967 * 299.99772 * 1 2 3 26 26 H 1.09002 * 109.46640 * 59.99976 * 1 2 3 27 27 H 1.09004 * 109.47053 * 299.99619 * 8 7 5 28 28 H 1.08991 * 109.47679 * 59.99613 * 8 7 5 29 29 H 0.96993 * 120.00202 * 180.02562 * 12 11 9 30 30 H 1.07999 * 119.98542 * 359.97438 * 18 17 5 31 31 H 1.08002 * 119.99338 * 180.25665 * 19 18 17 32 32 H 1.07997 * 120.01057 * 179.72866 * 20 19 18 33 33 H 1.08001 * 120.00050 * 0.02562 * 23 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0063 6 1 3.8754 2.3049 0.1838 7 16 4.2077 0.7189 -1.5969 8 6 3.5778 1.9735 -2.7457 9 6 4.0333 1.6475 -4.1447 10 1 4.6406 0.7727 -4.3248 11 6 3.6738 2.4653 -5.1949 12 7 2.9338 3.5302 -4.9757 13 14 4.2378 2.0608 -6.9292 14 1 3.7181 0.7257 -7.3200 15 1 3.7223 3.0879 -7.8697 16 1 5.7220 2.0474 -6.9765 17 6 4.1111 0.3916 1.0989 18 6 3.8430 -0.9648 1.0894 19 6 4.3462 -1.7764 2.0886 20 6 5.1093 -1.2308 3.1040 21 6 5.3735 0.1270 3.1169 22 17 6.3322 0.8129 4.3913 23 6 4.8738 0.9382 2.1135 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 2.4883 1.9836 -2.7110 28 1 3.9594 2.9533 -2.4588 29 1 2.6806 4.1053 -5.7146 30 1 3.2428 -1.3908 0.2990 31 1 4.1399 -2.8365 2.0783 32 1 5.4988 -1.8643 3.8871 33 1 5.0791 1.9984 2.1235 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413014090.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:05 Heat of formation + Delta-G solvation = -75.773798 kcal Electronic energy + Delta-G solvation = -19257.135658 eV Core-core repulsion = 16013.858980 eV Total energy + Delta-G solvation = -3243.276678 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.037 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.43116 -39.22404 -36.59353 -36.27674 -33.25253 -33.19646 -30.84805 -28.84962 -28.37187 -26.92071 -23.23233 -22.79419 -22.26255 -20.82751 -17.73445 -17.34168 -16.72857 -16.38670 -16.18024 -15.61003 -15.52735 -14.93256 -14.33007 -13.95638 -13.70814 -13.44978 -13.31995 -13.15935 -12.49818 -12.41890 -12.26749 -12.07801 -11.63078 -11.56881 -11.41676 -11.02858 -10.90739 -10.77188 -10.61353 -10.58734 -10.21996 -9.70467 -9.14831 -8.92439 -8.68775 -8.66663 -6.99460 -6.24206 -4.31111 0.94382 1.13972 1.90592 2.00902 2.68394 2.82363 3.24818 3.28452 3.31721 3.58148 3.67195 4.30181 4.39350 4.65800 4.81483 4.96883 5.12212 5.20950 5.24103 5.28324 5.31164 5.34243 5.62017 5.68894 5.72535 6.07148 6.29231 6.41492 6.50283 6.69771 6.97069 7.01822 7.66937 7.88585 7.91096 8.70132 9.32655 10.86557 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.017620 B = 0.004070 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.726501 B = 6877.427400 C = 7592.019443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.344 6.344 3 C 0.478 3.522 4 O -0.500 6.500 5 C -0.027 4.027 6 H 0.129 0.871 7 S -0.229 6.229 8 C 0.079 3.921 9 C -0.518 4.518 10 H 0.068 0.932 11 C 0.068 3.932 12 N -0.888 5.888 13 Si 0.908 3.092 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.053 4.053 18 C -0.077 4.077 19 C -0.109 4.109 20 C -0.107 4.107 21 C -0.038 4.038 22 Cl -0.075 7.075 23 C -0.092 4.092 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.038 0.962 28 H 0.041 0.959 29 H 0.268 0.732 30 H 0.146 0.854 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.462 -9.354 16.139 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.260 6.260 3 C 0.317 3.683 4 O -0.387 6.387 5 C -0.156 4.156 6 H 0.147 0.853 7 S 0.002 5.998 8 C -0.067 4.067 9 C -0.557 4.557 10 H 0.086 0.914 11 C -0.137 4.137 12 N -0.525 5.525 13 Si 0.735 3.265 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.054 4.054 18 C -0.096 4.096 19 C -0.128 4.128 20 C -0.126 4.126 21 C -0.064 4.064 22 Cl -0.046 7.046 23 C -0.112 4.112 24 H 0.119 0.881 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.862 -9.708 15.909 18.657 hybrid contribution -0.598 1.245 -0.653 1.528 sum 0.264 -8.463 15.256 17.448 Atomic orbital electron populations 1.23268 0.76629 1.03518 1.02517 1.86491 1.22974 1.32542 1.83981 1.23299 0.91012 0.81788 0.72161 1.90695 1.66566 1.36311 1.45150 1.22028 0.89706 1.04200 0.99648 0.85258 1.87098 1.70859 1.44214 0.97599 1.21270 0.98691 0.92524 0.94252 1.20540 1.34333 1.11426 0.89427 0.91359 1.24968 0.94630 0.94559 0.99500 1.69956 1.35682 1.14170 1.32715 0.86384 0.79246 0.78257 0.82617 1.19831 1.20972 1.19792 1.18947 0.98702 0.93958 0.93820 1.21385 0.97573 0.92358 0.98262 1.21107 0.97538 1.00254 0.93869 1.21076 0.99057 0.92920 0.99576 1.20749 0.99510 0.93713 0.92466 1.98363 1.70590 1.85200 1.50441 1.20894 0.97201 1.00382 0.92720 0.88109 0.92248 0.91647 0.94410 0.94050 0.92269 0.83628 0.84749 0.85007 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.50 16 2 O -0.34 -5.42 8.28 -39.27 -0.33 -5.74 16 3 C 0.48 8.76 6.36 36.01 0.23 8.98 16 4 O -0.50 -10.46 16.84 -18.75 -0.32 -10.78 16 5 C -0.03 -0.48 2.89 -29.04 -0.08 -0.56 16 6 H 0.13 2.20 7.86 -51.93 -0.41 1.79 16 7 S -0.23 -4.75 20.68 -107.50 -2.22 -6.98 16 8 C 0.08 2.05 5.48 36.01 0.20 2.25 16 9 C -0.52 -14.37 9.13 -34.44 -0.31 -14.68 16 10 H 0.07 1.87 7.71 -52.49 -0.40 1.46 16 11 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 12 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 13 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 C -0.05 -0.77 4.77 -104.63 -0.50 -1.27 16 18 C -0.08 -1.00 8.32 -39.58 -0.33 -1.33 16 19 C -0.11 -1.15 10.05 -39.59 -0.40 -1.55 16 20 C -0.11 -1.11 9.83 -39.55 -0.39 -1.50 16 21 C -0.04 -0.45 6.32 -39.50 -0.25 -0.70 16 22 Cl -0.07 -0.81 28.96 -51.86 -1.50 -2.31 16 23 C -0.09 -1.20 9.46 -39.55 -0.37 -1.58 16 24 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 26 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 27 H 0.04 1.05 8.00 -51.92 -0.42 0.63 16 28 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.15 1.96 6.82 -52.49 -0.36 1.60 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.14 1.64 7.95 -52.49 -0.42 1.22 16 LS Contribution 322.83 15.07 4.86 4.86 Total: -1.00 -30.81 322.83 -8.70 -39.51 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -3.67 Total: -0.87 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -1.24 Total: -8.63 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.74 Total: -25.13 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.64 Total: -16.52 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -4.75 SS G_CDS: -2.22 Total: -6.98 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.81 -8.70 -39.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014090.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.263 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds