Wall clock time and date at job start Tue Mar 31 2020 07:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00572 * 2 1 4 4 O 1.20835 * 119.99735 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00487 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.47392 * 169.99767 * 5 3 2 7 7 S 1.81406 * 109.46782 * 289.99236 * 5 3 2 8 8 C 1.81391 * 103.00380 * 295.00211 * 7 5 3 9 9 C 1.50701 * 109.47330 * 179.97438 * 8 7 5 10 10 H 1.07997 * 119.99545 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00035 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99911 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99991 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47250 * 89.99854 * 13 11 9 15 15 H 1.48500 * 109.47119 * 209.99648 * 13 11 9 16 16 H 1.48497 * 109.47267 * 329.99464 * 13 11 9 17 17 C 1.50697 * 109.47597 * 49.99590 * 5 3 2 18 18 C 1.38258 * 119.99606 * 120.00130 * 17 5 3 19 19 C 1.38222 * 120.02835 * 180.02562 * 18 17 5 20 20 C 1.38243 * 120.01138 * 359.97438 * 19 18 17 21 21 C 1.38329 * 119.98317 * 0.02562 * 20 19 18 22 22 Cl 1.73608 * 120.00954 * 180.02562 * 21 20 19 23 23 C 1.38196 * 119.98793 * 299.72723 * 17 5 3 24 24 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46782 * 60.00258 * 1 2 3 26 26 H 1.09004 * 109.47085 * 300.00378 * 1 2 3 27 27 H 1.09005 * 109.47135 * 300.00163 * 8 7 5 28 28 H 1.09005 * 109.47338 * 59.99594 * 8 7 5 29 29 H 0.96994 * 120.00259 * 180.02562 * 12 11 9 30 30 H 1.07995 * 119.98916 * 359.97438 * 18 17 5 31 31 H 1.07997 * 119.99348 * 179.97438 * 19 18 17 32 32 H 1.07997 * 120.00550 * 180.02562 * 20 19 18 33 33 H 1.07993 * 120.01228 * 0.02562 * 23 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.8762 2.3044 -0.1790 7 16 4.2014 0.7221 1.6063 8 6 3.5669 1.9789 2.7501 9 6 4.0159 1.6551 4.1517 10 1 4.6226 0.7808 4.3359 11 6 3.6529 2.4755 5.1987 12 7 4.0443 2.1926 6.4220 13 14 2.6041 3.9880 4.8799 14 1 1.1679 3.6270 4.9909 15 1 2.9297 5.0360 5.8804 16 1 2.8809 4.5036 3.5151 17 6 4.1155 0.3892 -1.0893 18 6 4.8825 0.9340 -2.1023 19 6 5.3861 0.1225 -3.1015 20 6 5.1234 -1.2347 -3.0881 21 6 4.3560 -1.7803 -2.0748 22 17 4.0262 -3.4847 -2.0569 23 6 3.8569 -0.9683 -1.0717 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 3.9498 2.9582 2.4626 28 1 2.4776 1.9890 2.7110 29 1 3.7887 2.7695 7.1586 30 1 5.0877 1.9942 -2.1135 31 1 5.9849 0.5487 -3.8928 32 1 5.5172 -1.8688 -3.8686 33 1 3.2611 -1.3944 -0.2781 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413014095.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:09 Heat of formation + Delta-G solvation = -71.056397 kcal Electronic energy + Delta-G solvation = -19416.965585 eV Core-core repulsion = 16173.893469 eV Total energy + Delta-G solvation = -3243.072116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.037 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.53928 -39.28769 -36.57744 -36.38301 -33.32492 -33.12419 -30.87024 -29.53331 -28.62179 -27.00422 -22.92870 -22.81168 -22.17550 -20.92012 -17.83912 -17.42921 -16.85231 -16.75093 -16.35286 -15.71704 -15.63024 -14.89093 -14.24038 -13.88803 -13.72469 -13.56886 -13.48873 -13.30877 -12.88524 -12.66067 -12.36017 -12.13137 -11.70757 -11.62178 -11.54412 -10.97925 -10.89165 -10.71584 -10.70772 -10.59305 -10.22889 -9.78994 -9.23298 -8.95663 -8.78172 -8.77280 -7.13607 -6.25248 -4.29188 0.85621 1.11071 1.78495 2.03978 2.52140 2.71822 3.18634 3.25312 3.30285 3.40910 3.57528 4.26167 4.29856 4.55248 4.76576 4.93382 5.05879 5.06403 5.15404 5.16385 5.25393 5.34261 5.47414 5.57136 5.78136 6.10027 6.14243 6.32154 6.38843 6.47145 6.55449 6.62358 7.31139 7.76172 8.20358 8.75093 9.29870 10.86223 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.018764 B = 0.004434 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.857930 B = 6313.819375 C = 6567.264910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.341 6.341 3 C 0.477 3.523 4 O -0.505 6.505 5 C -0.036 4.036 6 H 0.132 0.868 7 S -0.189 6.189 8 C 0.034 3.966 9 C -0.518 4.518 10 H 0.086 0.914 11 C 0.085 3.915 12 N -0.887 5.887 13 Si 0.874 3.126 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.264 1.264 17 C -0.056 4.056 18 C -0.095 4.095 19 C -0.111 4.111 20 C -0.106 4.106 21 C -0.036 4.036 22 Cl -0.071 7.071 23 C -0.072 4.072 24 H 0.102 0.898 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.031 0.969 29 H 0.269 0.731 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.639 -5.983 -20.202 21.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.257 6.257 3 C 0.317 3.683 4 O -0.393 6.393 5 C -0.165 4.165 6 H 0.150 0.850 7 S 0.042 5.958 8 C -0.114 4.114 9 C -0.557 4.557 10 H 0.104 0.896 11 C -0.120 4.120 12 N -0.524 5.524 13 Si 0.700 3.300 14 H -0.198 1.198 15 H -0.206 1.206 16 H -0.189 1.189 17 C -0.057 4.057 18 C -0.115 4.115 19 C -0.129 4.129 20 C -0.126 4.126 21 C -0.062 4.062 22 Cl -0.042 7.042 23 C -0.092 4.092 24 H 0.121 0.879 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.267 -6.668 -19.728 20.863 hybrid contribution -1.509 1.878 -0.119 2.412 sum -2.776 -4.790 -19.847 20.605 Atomic orbital electron populations 1.23295 0.76440 1.03755 1.02455 1.86511 1.23121 1.32354 1.83728 1.23353 0.91097 0.81838 0.72042 1.90683 1.66670 1.36357 1.45579 1.22146 0.89788 1.04371 1.00168 0.85011 1.87295 1.70090 1.42211 0.96181 1.21641 0.98261 0.94125 0.97352 1.20358 1.35084 1.13047 0.87162 0.89622 1.24804 0.95287 0.97353 0.94604 1.69849 1.44870 1.38469 0.99202 0.86861 0.81221 0.83084 0.78813 1.19789 1.20576 1.18867 1.18903 0.99318 0.92931 0.94560 1.21138 0.96311 1.00621 0.93404 1.21020 1.00192 0.92758 0.98937 1.21086 0.97993 0.95655 0.97837 1.20844 1.02069 0.85285 0.98052 1.98369 1.94431 1.13018 1.98366 1.21142 0.98329 0.92198 0.97549 0.87921 0.92166 0.91682 0.94089 0.95034 0.92057 0.84983 0.84787 0.84940 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.48 16 2 O -0.34 -5.28 8.32 -39.24 -0.33 -5.60 16 3 C 0.48 8.29 6.36 36.00 0.23 8.52 16 4 O -0.50 -9.85 16.84 -18.76 -0.32 -10.17 16 5 C -0.04 -0.59 2.89 -29.04 -0.08 -0.68 16 6 H 0.13 2.01 7.86 -51.92 -0.41 1.60 16 7 S -0.19 -3.83 20.66 -107.50 -2.22 -6.06 16 8 C 0.03 0.82 4.55 36.01 0.16 0.98 16 9 C -0.52 -14.59 9.68 -34.44 -0.33 -14.92 16 10 H 0.09 2.62 7.96 -52.49 -0.42 2.21 16 11 C 0.08 2.41 5.47 -17.82 -0.10 2.32 16 12 N -0.89 -26.54 13.96 55.43 0.77 -25.76 16 13 Si 0.87 21.24 27.47 -169.99 -4.67 16.57 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 17 C -0.06 -0.77 4.77 -104.63 -0.50 -1.27 16 18 C -0.10 -1.07 9.67 -39.58 -0.38 -1.45 16 19 C -0.11 -1.04 10.05 -39.59 -0.40 -1.44 16 20 C -0.11 -1.06 9.83 -39.55 -0.39 -1.45 16 21 C -0.04 -0.43 6.32 -39.50 -0.25 -0.68 16 22 Cl -0.07 -0.80 28.96 -51.86 -1.50 -2.30 16 23 C -0.07 -0.99 8.08 -39.55 -0.32 -1.31 16 24 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 26 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 27 H 0.04 0.98 7.20 -51.92 -0.37 0.60 16 28 H 0.03 0.77 7.43 -51.92 -0.39 0.39 16 29 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.13 1.23 7.95 -52.49 -0.42 0.81 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.15 2.21 6.86 -52.49 -0.36 1.85 16 LS Contribution 319.28 15.07 4.81 4.81 Total: -1.00 -31.50 319.28 -8.38 -39.89 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -3.64 Total: -1.48 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -1.29 Total: -9.90 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.77 Total: -25.76 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.64 Total: -15.77 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 16 Polarization: -3.83 SS G_CDS: -2.22 Total: -6.06 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.50 -8.38 -39.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014095.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.168 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds