Wall clock time and date at job start Tue Mar 31 2020 07:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34705 * 116.99805 * 2 1 4 4 O 1.21463 * 120.00480 * 0.02562 * 3 2 1 5 5 C 1.47740 * 119.99782 * 180.02562 * 3 2 1 6 6 C 1.39645 * 120.14069 * 6.13837 * 5 3 2 7 7 C 1.37935 * 119.87058 * 180.27488 * 6 5 3 8 8 C 1.38363 * 120.16352 * 359.72959 * 7 6 5 9 9 C 1.38451 * 120.29560 * 359.97438 * 8 7 6 10 10 Cl 1.73600 * 119.94454 * 179.97438 * 9 8 7 11 11 C 1.38095 * 120.11878 * 0.02562 * 9 8 7 12 12 C 1.50704 * 120.08127 * 180.02562 * 11 9 8 13 13 S 1.81399 * 109.46954 * 96.01087 * 12 11 9 14 14 C 1.81399 * 102.99821 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47408 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99714 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00553 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99677 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00256 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47051 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46564 * 120.00324 * 19 17 15 22 22 H 1.48495 * 109.47293 * 240.00452 * 19 17 15 23 23 H 1.09005 * 109.46811 * 299.99221 * 1 2 3 24 24 H 1.08990 * 109.47383 * 59.99608 * 1 2 3 25 25 H 1.09004 * 109.47114 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.06739 * 0.02562 * 6 5 3 27 27 H 1.07998 * 119.91481 * 179.70405 * 7 6 5 28 28 H 1.08005 * 119.85216 * 180.02562 * 8 7 6 29 29 H 1.08994 * 109.46940 * 336.00949 * 12 11 9 30 30 H 1.08997 * 109.46744 * 216.01038 * 12 11 9 31 31 H 1.09002 * 109.47092 * 299.99653 * 14 13 12 32 32 H 1.08998 * 109.47343 * 59.99502 * 14 13 12 33 33 H 0.97003 * 120.00180 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5389 1.2776 -0.0006 6 6 4.3019 0.1152 -0.1302 7 6 5.6791 0.1932 -0.1244 8 6 6.3053 1.4203 0.0040 9 6 5.5555 2.5777 0.1268 10 17 6.3508 4.1124 0.2880 11 6 4.1761 2.5134 0.1224 12 6 3.3607 3.7738 0.2556 13 16 2.8802 4.3600 -1.3924 14 6 1.9240 5.8583 -1.0298 15 6 1.4463 6.4739 -2.3197 16 1 1.6936 6.0104 -3.2633 17 6 0.6936 7.6288 -2.2953 18 7 0.3929 8.1935 -1.1462 19 14 0.1021 8.3922 -3.8943 20 1 0.5715 7.5703 -5.0386 21 1 -1.3819 8.4443 -3.8985 22 1 0.6461 9.7685 -4.0167 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.8148 -0.8434 -0.2309 27 1 6.2699 -0.7058 -0.2198 28 1 7.3840 1.4756 0.0076 29 1 3.9544 4.5395 0.7548 30 1 2.4661 3.5674 0.8430 31 1 1.0652 5.6001 -0.4101 32 1 2.5540 6.5717 -0.4985 33 1 -0.1363 9.0062 -1.1290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413018961.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:59 Heat of formation + Delta-G solvation = -66.181490 kcal Electronic energy + Delta-G solvation = -19303.467326 eV Core-core repulsion = 16060.606602 eV Total energy + Delta-G solvation = -3242.860724 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.037 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.64723 -39.01769 -36.47947 -36.32065 -33.06104 -32.75925 -31.44355 -28.45842 -27.95578 -26.91001 -24.03919 -23.01468 -21.91346 -20.87882 -18.05098 -16.96023 -16.49097 -16.33975 -15.94593 -15.71089 -15.21543 -15.03886 -14.58066 -13.90389 -13.70524 -13.36345 -13.03193 -12.79513 -12.45589 -12.38713 -12.16021 -12.05391 -11.81432 -11.65479 -11.50207 -10.86186 -10.76757 -10.71499 -10.61863 -10.13020 -9.97185 -9.49395 -9.09436 -8.83641 -8.58865 -8.54021 -6.41587 -6.11440 -4.14678 0.52123 0.94431 2.05884 2.53892 2.73651 2.83915 3.29367 3.36011 3.42797 3.65723 3.99003 4.41928 4.53166 4.58308 4.72356 4.86315 5.07713 5.14034 5.23651 5.25620 5.34403 5.46697 5.55676 5.63485 5.94300 6.03687 6.10273 6.15804 6.41585 6.58595 7.22544 7.27608 7.82961 7.87799 8.11199 8.86849 9.47214 11.00088 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.004979 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.094934 B = 5622.348168 C = 7113.568165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.361 6.361 3 C 0.493 3.507 4 O -0.457 6.457 5 C -0.103 4.103 6 C -0.060 4.060 7 C -0.128 4.128 8 C -0.077 4.077 9 C -0.040 4.040 10 Cl -0.048 7.048 11 C 0.017 3.983 12 C -0.075 4.075 13 S -0.271 6.271 14 C 0.092 3.908 15 C -0.507 4.507 16 H 0.066 0.934 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.905 3.095 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.099 0.901 26 H 0.143 0.857 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.975 -18.691 5.437 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.279 6.279 3 C 0.336 3.664 4 O -0.342 6.342 5 C -0.106 4.106 6 C -0.078 4.078 7 C -0.147 4.147 8 C -0.095 4.095 9 C -0.069 4.069 10 Cl -0.018 7.018 11 C 0.014 3.986 12 C -0.222 4.222 13 S -0.042 6.042 14 C -0.055 4.055 15 C -0.546 4.546 16 H 0.084 0.916 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.117 0.883 26 H 0.161 0.839 27 H 0.157 0.843 28 H 0.157 0.843 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.913 -18.485 4.546 21.019 hybrid contribution -0.786 1.236 0.426 1.525 sum 8.127 -17.249 4.973 19.705 Atomic orbital electron populations 1.23256 0.75889 1.03343 1.03073 1.86472 1.23583 1.32776 1.85079 1.20964 0.88815 0.81797 0.74848 1.90973 1.66303 1.34729 1.42231 1.18788 0.89855 0.93488 1.08457 1.21495 0.93850 0.97866 0.94616 1.21050 0.94300 0.97485 1.01885 1.21282 1.00587 0.90783 0.96880 1.20633 0.91699 0.88207 1.06321 1.98392 1.79025 1.28493 1.95927 1.19361 0.91735 0.93889 0.93579 1.22609 1.02356 0.95382 1.01838 1.86497 1.71502 1.37806 1.08389 1.21027 0.95568 0.88318 1.00614 1.20709 1.33285 1.08900 0.91719 0.91582 1.24951 0.95644 0.96423 0.96880 1.69975 1.38393 1.20079 1.24739 0.86321 0.78413 0.78996 0.83069 1.19467 1.20792 1.20770 0.91858 0.91446 0.88285 0.83916 0.84299 0.84290 0.89659 0.87193 0.94499 0.94801 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -4.69 9.84 -40.51 -0.40 -5.09 16 3 C 0.49 7.82 7.83 34.61 0.27 8.09 16 4 O -0.46 -8.87 12.16 -19.24 -0.23 -9.10 16 5 C -0.10 -1.49 5.87 -104.99 -0.62 -2.11 16 6 C -0.06 -0.64 9.62 -39.17 -0.38 -1.02 16 7 C -0.13 -1.16 10.03 -39.65 -0.40 -1.56 16 8 C -0.08 -0.80 9.82 -39.46 -0.39 -1.19 16 9 C -0.04 -0.56 6.31 -39.56 -0.25 -0.81 16 10 Cl -0.05 -0.68 27.18 -51.86 -1.41 -2.09 16 11 C 0.02 0.27 5.18 -104.17 -0.54 -0.27 16 12 C -0.08 -1.45 4.94 36.01 0.18 -1.28 16 13 S -0.27 -6.39 20.55 -107.50 -2.21 -8.60 16 14 C 0.09 2.54 5.70 36.01 0.21 2.75 16 15 C -0.51 -14.97 9.13 -34.44 -0.31 -15.28 16 16 H 0.07 1.96 7.71 -52.48 -0.40 1.55 16 17 C 0.06 1.87 5.46 -17.82 -0.10 1.78 16 18 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 19 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.14 1.21 7.63 -52.48 -0.40 0.81 16 27 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 28 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 29 H 0.08 1.60 6.65 -51.93 -0.35 1.26 16 30 H 0.11 2.22 5.78 -51.93 -0.30 1.92 16 31 H 0.04 1.08 8.14 -51.92 -0.42 0.66 16 32 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 317.22 15.07 4.78 4.78 Total: -1.00 -33.18 317.22 -8.56 -41.74 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -3.54 Total: -3.12 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -1.26 Total: -9.43 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.63 Total: -14.19 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: -6.39 SS G_CDS: -2.21 Total: -8.60 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.41 Total: -2.09 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.18 -8.56 -41.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413018961.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.441 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds