Wall clock time and date at job start Tue Mar 31 2020 07:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00144 * 2 1 4 4 H 1.48505 * 109.46905 * 269.99809 * 3 2 1 5 5 H 1.48502 * 109.47290 * 29.99126 * 3 2 1 6 6 H 1.48494 * 109.47684 * 149.99816 * 3 2 1 7 7 C 1.37880 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99536 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00087 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47649 * 300.00130 * 9 7 2 11 11 O 1.42897 * 109.47005 * 60.00331 * 9 7 2 12 12 C 1.53000 * 109.47177 * 179.97438 * 9 7 2 13 13 S 1.81003 * 109.47102 * 180.02562 * 12 9 7 14 14 C 1.76202 * 99.99845 * 180.02562 * 13 12 9 15 15 N 1.31019 * 125.07899 * 359.97438 * 14 13 12 16 16 C 1.35954 * 109.63228 * 180.02562 * 15 14 13 17 17 C 1.39736 * 133.32124 * 179.97438 * 16 15 14 18 18 C 1.37855 * 119.79111 * 180.02562 * 17 16 15 19 19 F 1.35103 * 119.78438 * 180.02562 * 18 17 16 20 20 C 1.39060 * 120.42447 * 0.02562 * 18 17 16 21 21 F 1.35103 * 119.82107 * 179.97438 * 20 18 17 22 22 C 1.38116 * 120.36376 * 0.02562 * 20 18 17 23 23 C 1.38682 * 119.86096 * 359.97438 * 22 20 18 24 24 N 1.36652 * 125.07606 * 180.02562 * 14 13 12 25 25 H 0.97001 * 126.38918 * 359.96714 * 24 14 13 26 26 H 0.97002 * 119.99961 * 0.02562 * 1 2 3 27 27 H 0.96698 * 114.00102 * 59.99347 * 11 9 7 28 28 H 1.09001 * 109.47072 * 60.00773 * 12 9 7 29 29 H 1.09003 * 109.47553 * 300.00483 * 12 9 7 30 30 H 1.08000 * 120.10676 * 0.28224 * 17 16 15 31 31 H 1.07998 * 120.06853 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5564 0.8919 11 8 0.4292 -2.5756 -1.1647 12 6 2.2453 -3.6620 0.0015 13 16 1.3403 -5.2296 0.0021 14 6 2.6902 -6.3621 0.0025 15 7 3.9562 -6.0247 0.0018 16 6 4.7273 -7.1444 0.0018 17 6 6.1083 -7.3574 0.0008 18 6 6.6029 -8.6441 0.0005 19 9 7.9382 -8.8499 0.0001 20 6 5.7363 -9.7317 0.0007 21 9 6.2343 -10.9876 0.0000 22 6 4.3692 -9.5350 0.0007 23 6 3.8570 -8.2462 0.0009 24 7 2.5729 -7.7236 0.0025 25 1 1.7456 -8.2300 0.0027 26 1 -0.4850 0.8401 -0.0004 27 1 0.9210 -2.5308 -1.9961 28 1 2.8726 -3.6040 0.8910 29 1 2.8714 -3.6047 -0.8890 30 1 6.7861 -6.5166 0.0043 31 1 3.7005 -10.3831 0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450788024.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:35 Heat of formation + Delta-G solvation = -73.251491 kcal Electronic energy + Delta-G solvation = -20525.417132 eV Core-core repulsion = 16762.745901 eV Total energy + Delta-G solvation = -3762.671231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 300.048 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.62272 -48.69425 -42.16746 -36.99941 -36.06187 -33.43242 -32.27590 -30.27922 -29.83511 -29.16099 -25.50379 -24.12838 -22.82540 -21.94664 -21.13531 -19.13290 -18.28825 -17.71909 -17.29202 -16.55909 -16.55796 -15.69853 -15.41348 -15.24386 -15.12338 -14.72837 -14.46068 -14.42091 -14.22058 -13.80693 -13.70432 -13.23106 -12.51938 -11.96844 -11.88427 -11.47241 -11.34308 -11.05415 -11.01644 -10.94678 -10.43432 -10.28635 -10.08574 -9.30634 -9.00363 -8.72430 -8.63063 -8.43881 -7.38265 -6.15430 -4.35420 0.34446 0.84228 1.19368 2.30110 2.41742 2.83820 3.21998 3.28187 3.29547 3.32849 3.59314 3.98113 4.05127 4.29876 4.63207 4.75492 4.88727 5.12188 5.18580 5.39639 5.55748 5.68973 5.74301 5.90608 6.04403 6.09291 6.41657 6.57649 6.84934 7.41916 7.46083 7.68680 7.93106 8.65818 9.16771 9.40868 10.88675 Molecular weight = 300.05amu Principal moments of inertia in cm(-1) A = 0.028051 B = 0.003053 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.937338 B = 9170.532772 C =10077.114939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.081 3.919 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.570 4.570 8 H 0.062 0.938 9 C 0.243 3.757 10 H 0.068 0.932 11 O -0.560 6.560 12 C -0.112 4.112 13 S 0.002 5.998 14 C 0.285 3.715 15 N -0.491 5.491 16 C 0.083 3.917 17 C -0.076 4.076 18 C 0.065 3.935 19 F -0.127 7.127 20 C 0.076 3.924 21 F -0.127 7.127 22 C -0.113 4.113 23 C 0.062 3.938 24 N -0.584 5.584 25 H 0.430 0.570 26 H 0.263 0.737 27 H 0.350 0.650 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.154 0.846 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.693 -17.760 -0.220 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.126 4.126 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.609 4.609 8 H 0.080 0.920 9 C 0.183 3.817 10 H 0.085 0.915 11 O -0.363 6.363 12 C -0.261 4.261 13 S 0.236 5.764 14 C -0.089 4.089 15 N -0.216 5.216 16 C -0.039 4.039 17 C -0.097 4.097 18 C 0.042 3.958 19 F -0.106 7.106 20 C 0.054 3.946 21 F -0.105 7.105 22 C -0.135 4.135 23 C -0.051 4.051 24 N -0.199 5.199 25 H 0.270 0.730 26 H 0.073 0.927 27 H 0.194 0.806 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.172 0.828 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.239 -17.093 0.250 17.880 hybrid contribution 1.915 -0.210 -0.341 1.957 sum 7.154 -17.304 -0.091 18.724 Atomic orbital electron populations 1.70068 1.05993 1.26888 1.46205 1.25031 0.94778 0.99292 0.93486 0.86555 0.79938 0.82877 0.78369 1.20368 1.21011 1.19622 1.21472 0.93399 0.90255 1.55804 0.91982 1.19290 0.87502 0.87908 0.87013 0.91466 1.86588 1.38272 1.96013 1.15423 1.24998 1.03072 0.91361 1.06628 1.86243 1.01449 0.98751 1.89987 1.26367 0.98602 0.85335 0.98561 1.71211 0.98820 1.26762 1.24830 1.18764 0.92980 0.88904 1.03263 1.19970 0.93149 0.95365 1.01251 1.17054 0.77571 0.92499 1.08656 1.91532 1.29163 1.95585 1.94315 1.16948 0.90873 0.78827 1.07985 1.91527 1.87727 1.37074 1.94201 1.19504 0.92952 0.95043 1.06002 1.18465 0.85412 0.94653 1.06551 1.43003 1.07036 1.06010 1.63814 0.73019 0.92685 0.80559 0.88660 0.89199 0.82795 0.83612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.02 12.84 55.43 0.71 -23.30 16 2 C 0.08 2.16 5.40 -17.82 -0.10 2.06 16 3 Si 0.90 20.25 29.54 -169.99 -5.02 15.22 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.57 -14.62 8.76 -34.44 -0.30 -14.92 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.24 5.64 2.87 -27.89 -0.08 5.56 16 10 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 11 O -0.56 -13.16 12.32 -35.23 -0.43 -13.59 16 12 C -0.11 -2.11 4.79 37.16 0.18 -1.93 16 13 S 0.00 0.03 21.95 -107.50 -2.36 -2.33 16 14 C 0.28 4.19 8.20 -88.45 -0.73 3.47 16 15 N -0.49 -7.98 10.57 -10.90 -0.12 -8.10 16 16 C 0.08 1.17 7.22 -84.66 -0.61 0.56 16 17 C -0.08 -0.93 10.07 -39.16 -0.39 -1.33 16 18 C 0.06 0.76 7.29 -39.42 -0.29 0.48 16 19 F -0.13 -1.55 17.16 2.25 0.04 -1.51 16 20 C 0.08 0.84 7.30 -39.32 -0.29 0.56 16 21 F -0.13 -1.43 17.17 2.25 0.04 -1.39 16 22 C -0.11 -1.12 10.03 -39.46 -0.40 -1.51 16 23 C 0.06 0.74 7.29 -83.80 -0.61 0.13 16 24 N -0.58 -6.68 6.28 -10.55 -0.07 -6.75 16 25 H 0.43 3.43 8.96 -40.82 -0.37 3.06 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.35 7.28 9.04 45.56 0.41 7.69 16 28 H 0.09 1.82 8.14 -51.92 -0.42 1.39 16 29 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 30 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 302.97 15.07 4.57 4.57 Total: -1.00 -29.31 302.97 -7.86 -37.17 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -1.61 Total: 6.90 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -3.61 Total: -6.88 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.53 Total: -38.15 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.43 Total: -13.59 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.08 Total: -2.90 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.36 Total: -2.33 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.31 -7.86 -37.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450788024.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.081 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds