Wall clock time and date at job start Tue Mar 31 2020 07:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00144 * 2 1 4 4 H 1.48505 * 109.46905 * 269.99809 * 3 2 1 5 5 H 1.48502 * 109.47290 * 29.99126 * 3 2 1 6 6 H 1.48494 * 109.47684 * 149.99816 * 3 2 1 7 7 C 1.37880 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99536 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00087 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47649 * 300.00130 * 9 7 2 11 11 O 1.42897 * 109.47005 * 60.00331 * 9 7 2 12 12 C 1.53000 * 109.47177 * 179.97438 * 9 7 2 13 13 S 1.81003 * 109.47102 * 180.02562 * 12 9 7 14 14 C 1.76202 * 99.99845 * 180.02562 * 13 12 9 15 15 N 1.31019 * 125.07899 * 359.97438 * 14 13 12 16 16 C 1.35954 * 109.63228 * 180.02562 * 15 14 13 17 17 C 1.39736 * 133.32124 * 179.97438 * 16 15 14 18 18 C 1.37855 * 119.79111 * 180.02562 * 17 16 15 19 19 F 1.35103 * 119.78438 * 180.02562 * 18 17 16 20 20 C 1.39060 * 120.42447 * 0.02562 * 18 17 16 21 21 F 1.35103 * 119.82107 * 179.97438 * 20 18 17 22 22 C 1.38116 * 120.36376 * 0.02562 * 20 18 17 23 23 C 1.38682 * 119.86096 * 359.97438 * 22 20 18 24 24 N 1.36652 * 125.07606 * 180.02562 * 14 13 12 25 25 H 0.97001 * 126.38918 * 359.96714 * 24 14 13 26 26 H 0.97002 * 119.99961 * 0.02562 * 1 2 3 27 27 H 0.96698 * 114.00102 * 59.99347 * 11 9 7 28 28 H 1.09001 * 109.47072 * 60.00773 * 12 9 7 29 29 H 1.09003 * 109.47553 * 300.00483 * 12 9 7 30 30 H 1.08000 * 120.10676 * 0.28224 * 17 16 15 31 31 H 1.07998 * 120.06853 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5564 0.8919 11 8 0.4292 -2.5756 -1.1647 12 6 2.2453 -3.6620 0.0015 13 16 1.3403 -5.2296 0.0021 14 6 2.6902 -6.3621 0.0025 15 7 3.9562 -6.0247 0.0018 16 6 4.7273 -7.1444 0.0018 17 6 6.1083 -7.3574 0.0008 18 6 6.6029 -8.6441 0.0005 19 9 7.9382 -8.8499 0.0001 20 6 5.7363 -9.7317 0.0007 21 9 6.2343 -10.9876 0.0000 22 6 4.3692 -9.5350 0.0007 23 6 3.8570 -8.2462 0.0009 24 7 2.5729 -7.7236 0.0025 25 1 1.7456 -8.2300 0.0027 26 1 -0.4850 0.8401 -0.0004 27 1 0.9210 -2.5308 -1.9961 28 1 2.8726 -3.6040 0.8910 29 1 2.8714 -3.6047 -0.8890 30 1 6.7861 -6.5166 0.0043 31 1 3.7005 -10.3831 0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450788024.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:35 Heat of formation + Delta-G solvation = -92.472458 kcal Electronic energy + Delta-G solvation = -20526.250616 eV Core-core repulsion = 16762.745901 eV Total energy + Delta-G solvation = -3763.504715 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 300.048 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.53948 -49.61562 -43.17699 -37.95054 -37.90662 -34.45357 -34.27898 -31.69251 -31.05538 -30.19943 -27.38914 -25.15571 -23.84320 -23.02481 -22.80292 -20.12933 -19.37187 -19.14952 -18.67016 -17.52124 -17.48610 -16.85307 -16.69254 -16.50487 -16.25631 -16.13975 -16.04173 -15.90949 -15.31894 -15.23999 -14.66492 -14.31130 -14.07446 -13.47296 -13.25223 -12.89917 -12.78374 -12.76920 -12.50637 -12.08605 -12.05932 -11.75110 -11.35010 -11.11552 -10.72407 -10.32939 -10.05230 -9.55175 -8.57492 -8.16260 -6.42138 -0.59667 -0.09535 -0.01550 1.08284 1.26885 1.43574 1.45352 1.55407 1.81909 2.30434 2.40864 2.68500 3.03702 3.11009 3.18820 3.69177 3.82937 4.03691 4.11414 4.21510 4.24688 4.29394 4.52285 4.65064 4.78046 4.96405 5.10363 5.49029 5.52447 5.66834 5.98027 6.00174 6.42733 6.66924 7.30176 7.47203 8.88112 Molecular weight = 300.05amu Principal moments of inertia in cm(-1) A = 0.028051 B = 0.003053 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.937338 B = 9170.532772 C =10077.114939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.032 3.968 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.582 4.582 8 H 0.063 0.937 9 C 0.245 3.755 10 H 0.038 0.962 11 O -0.572 6.572 12 C -0.102 4.102 13 S 0.024 5.976 14 C 0.273 3.727 15 N -0.521 5.521 16 C 0.053 3.947 17 C -0.079 4.079 18 C 0.064 3.936 19 F -0.131 7.131 20 C 0.078 3.922 21 F -0.125 7.125 22 C -0.092 4.092 23 C 0.066 3.934 24 N -0.564 5.564 25 H 0.446 0.554 26 H 0.264 0.736 27 H 0.361 0.639 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.159 0.841 31 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.358 -19.442 -0.420 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.172 4.172 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.622 4.622 8 H 0.081 0.919 9 C 0.185 3.815 10 H 0.056 0.944 11 O -0.376 6.376 12 C -0.252 4.252 13 S 0.258 5.742 14 C -0.102 4.102 15 N -0.247 5.247 16 C -0.069 4.069 17 C -0.101 4.101 18 C 0.041 3.959 19 F -0.109 7.109 20 C 0.056 3.944 21 F -0.104 7.104 22 C -0.114 4.114 23 C -0.047 4.047 24 N -0.180 5.180 25 H 0.290 0.710 26 H 0.073 0.927 27 H 0.207 0.793 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.177 0.823 31 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 5.909 -18.803 0.045 19.710 hybrid contribution 1.786 0.137 -0.282 1.814 sum 7.696 -18.666 -0.237 20.192 Atomic orbital electron populations 1.70186 1.07514 1.27655 1.47818 1.25832 0.95484 1.02709 0.93171 0.85546 0.78712 0.78786 0.78478 1.19801 1.20898 1.19027 1.21872 0.93686 0.91717 1.54921 0.91881 1.19004 0.87379 0.89117 0.85951 0.94395 1.86527 1.38895 1.96140 1.16032 1.24456 1.01883 0.92534 1.06304 1.85968 1.00688 0.96804 1.90766 1.25981 0.97886 0.86397 0.99959 1.71100 0.99731 1.28505 1.25346 1.19010 0.93851 0.89131 1.04869 1.20015 0.92825 0.95900 1.01314 1.17123 0.77544 0.92643 1.08586 1.91525 1.29499 1.95581 1.94334 1.17021 0.91237 0.78574 1.07600 1.91539 1.87786 1.36920 1.94152 1.19751 0.92838 0.95197 1.03641 1.18580 0.85020 0.94887 1.06208 1.42840 1.07778 1.04863 1.62544 0.70979 0.92735 0.79338 0.89235 0.89285 0.82324 0.79934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.02 12.84 21.45 0.28 -50.74 16 2 C 0.03 1.68 5.40 84.66 0.46 2.14 16 3 Si 0.96 41.72 29.54 68.60 2.03 43.75 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.58 -30.27 8.76 25.60 0.22 -30.05 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 9 C 0.25 11.62 2.87 29.85 0.09 11.70 16 10 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 11 O -0.57 -27.22 12.32 -148.98 -1.84 -29.05 16 12 C -0.10 -3.91 4.79 71.98 0.34 -3.56 16 13 S 0.02 0.75 21.95 -56.49 -1.24 -0.49 16 14 C 0.27 7.70 8.20 179.59 1.47 9.17 16 15 N -0.52 -16.59 10.57 -188.39 -1.99 -18.58 16 16 C 0.05 1.43 7.22 39.39 0.28 1.71 16 17 C -0.08 -1.87 10.07 22.54 0.23 -1.65 16 18 C 0.06 1.39 7.29 22.38 0.16 1.55 16 19 F -0.13 -3.01 17.16 44.97 0.77 -2.23 16 20 C 0.08 1.51 7.30 22.44 0.16 1.68 16 21 F -0.13 -2.47 17.17 44.97 0.77 -1.70 16 22 C -0.09 -1.50 10.03 22.35 0.22 -1.28 16 23 C 0.07 1.42 7.29 38.70 0.28 1.70 16 24 N -0.56 -11.56 6.28 -187.31 -1.18 -12.74 16 25 H 0.45 5.78 8.96 -92.71 -0.83 4.95 16 26 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 27 H 0.36 15.13 9.04 -74.06 -0.67 14.46 16 28 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 29 H 0.09 3.37 8.14 -2.39 -0.02 3.36 16 30 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 31 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -62.83 302.97 1.25 -61.57 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -0.28 Total: 17.09 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 3.93 Total: -6.87 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -2.89 Total: -82.07 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -1.84 Total: -29.05 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 1.54 Total: -3.93 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -1.24 Total: -0.49 kcal Total: -62.83 1.25 -61.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450788024.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.899 kcal (2) G-P(sol) polarization free energy of solvation -62.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds