Wall clock time and date at job start Tue Mar 31 2020 07:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48502 * 109.46990 * 269.99093 * 3 2 1 5 5 H 1.48498 * 109.47566 * 29.99297 * 3 2 1 6 6 H 1.48503 * 109.47167 * 149.99666 * 3 2 1 7 7 C 1.37878 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99776 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00145 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47123 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00124 * 179.97438 * 10 9 7 12 12 O 1.21361 * 119.99833 * 0.02562 * 11 10 9 13 13 C 1.49350 * 120.00329 * 180.02562 * 11 10 9 14 14 O 1.21381 * 119.99826 * 0.02562 * 13 11 10 15 15 N 1.34775 * 120.00329 * 180.02562 * 13 11 10 16 16 C 1.39757 * 119.99998 * 185.27652 * 15 13 11 17 17 C 1.38957 * 120.04908 * 213.33518 * 16 15 13 18 18 C 1.38091 * 119.98356 * 180.02562 * 17 16 15 19 19 C 1.38371 * 120.08403 * 359.97438 * 18 17 16 20 20 Cl 1.73607 * 119.94495 * 180.27999 * 19 18 17 21 21 C 1.38600 * 120.10643 * 359.97438 * 19 18 17 22 22 F 1.35099 * 119.99038 * 180.02562 * 21 19 18 23 23 C 1.38313 * 120.01425 * 0.02562 * 21 19 18 24 24 H 0.97000 * 119.99740 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.47313 * 60.00051 * 9 7 2 26 26 H 1.08998 * 109.47231 * 300.00166 * 9 7 2 27 27 H 0.96999 * 120.00183 * 0.02562 * 10 9 7 28 28 H 0.97005 * 119.99849 * 5.27615 * 15 13 11 29 29 H 1.08001 * 120.01062 * 0.02562 * 17 16 15 30 30 H 1.07999 * 119.95517 * 180.02562 * 18 17 16 31 31 H 1.07992 * 120.04206 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 5.3250 -2.8215 0.0024 12 8 6.1136 -1.8990 0.0021 13 6 5.8229 -4.2295 0.0029 14 8 5.0341 -5.1521 0.0028 15 7 7.1479 -4.4758 0.0036 16 6 7.6148 -5.7884 -0.1072 17 6 8.7828 -6.1687 0.5425 18 6 9.2431 -7.4659 0.4316 19 6 8.5424 -8.3882 -0.3253 20 17 9.1205 -10.0200 -0.4562 21 6 7.3764 -8.0132 -0.9739 22 9 6.6938 -8.9158 -1.7118 23 6 6.9115 -6.7150 -0.8657 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6799 0.8912 26 1 3.8752 -0.6804 -0.8888 27 1 3.3696 -3.3125 0.0021 28 1 7.7776 -3.7419 0.0810 29 1 9.3305 -5.4499 1.1339 30 1 10.1508 -7.7610 0.9371 31 1 6.0032 -6.4221 -1.3713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487512365.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:07 Heat of formation + Delta-G solvation = -90.201687 kcal Electronic energy + Delta-G solvation = -20619.235254 eV Core-core repulsion = 16841.412511 eV Total energy + Delta-G solvation = -3777.822743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 300.046 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.23006 -41.13777 -39.39000 -38.15896 -36.91368 -35.34795 -34.37742 -32.47831 -31.20713 -29.99668 -28.45313 -25.26813 -23.64906 -22.79841 -21.65617 -20.28880 -19.12911 -18.26353 -17.28046 -16.98784 -16.67225 -16.31047 -16.03609 -15.72189 -15.56322 -15.13538 -14.44325 -14.29473 -14.08611 -13.77891 -13.35756 -13.31436 -12.79436 -12.51867 -12.45650 -12.37537 -12.09455 -11.57868 -11.26837 -11.13986 -10.89162 -10.55345 -10.09313 -9.63234 -9.51267 -9.29034 -8.92933 -8.58466 -8.49560 -6.30447 -4.35030 0.41499 0.68182 1.50773 1.66265 2.27382 2.98304 3.18731 3.26299 3.30986 3.37123 3.60555 3.85072 4.23079 4.24830 4.52313 4.66400 4.76751 4.95558 5.03562 5.30005 5.45116 5.55036 5.66067 5.84335 6.32358 6.49659 6.69521 6.83385 6.84285 7.16764 7.47242 7.86806 8.26100 8.34136 8.68908 9.26385 10.81212 Molecular weight = 300.05amu Principal moments of inertia in cm(-1) A = 0.040169 B = 0.002682 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.895228 B =10437.603454 C =10992.861985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.080 3.920 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.551 4.551 8 H 0.083 0.917 9 C 0.218 3.782 10 N -0.661 5.661 11 C 0.494 3.506 12 O -0.535 6.535 13 C 0.510 3.490 14 O -0.493 6.493 15 N -0.651 5.651 16 C 0.188 3.812 17 C -0.143 4.143 18 C -0.060 4.060 19 C -0.094 4.094 20 Cl -0.053 7.053 21 C 0.135 3.865 22 F -0.122 7.122 23 C -0.150 4.150 24 H 0.270 0.730 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.411 0.589 28 H 0.428 0.572 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.170 -14.652 0.255 24.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.588 4.588 8 H 0.101 0.899 9 C 0.096 3.904 10 N -0.310 5.310 11 C 0.273 3.727 12 O -0.415 6.415 13 C 0.293 3.707 14 O -0.365 6.365 15 N -0.298 5.298 16 C 0.093 3.907 17 C -0.163 4.163 18 C -0.079 4.079 19 C -0.123 4.123 20 Cl -0.024 7.024 21 C 0.114 3.886 22 F -0.100 7.100 23 C -0.171 4.171 24 H 0.079 0.921 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.247 0.753 28 H 0.268 0.732 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 19.888 -14.609 0.205 24.678 hybrid contribution 0.193 0.571 -0.117 0.614 sum 20.082 -14.039 0.088 24.502 Atomic orbital electron populations 1.69873 1.06222 1.27611 1.48629 1.24783 0.94820 0.99140 0.93714 0.86821 0.80517 0.83226 0.79127 1.19717 1.20725 1.18491 1.21032 0.88036 0.95589 1.54172 0.89879 1.19747 0.95907 0.77169 0.97534 1.46146 1.04809 1.12490 1.67590 1.19597 0.84775 0.87686 0.80663 1.90742 1.55287 1.44901 1.50526 1.20905 0.82282 0.91214 0.76275 1.90796 1.54937 1.45847 1.44950 1.43266 1.08086 1.07198 1.71262 1.17486 0.93988 0.84721 0.94547 1.20964 0.97398 0.96659 1.01319 1.20732 0.99449 0.91236 0.96504 1.20964 0.97151 0.88638 1.05503 1.98386 1.88097 1.18686 1.97200 1.17098 0.90437 0.87152 0.93902 1.91564 1.78486 1.65900 1.74065 1.21117 1.03319 0.91233 1.01477 0.92053 0.94786 0.95234 0.75291 0.73233 0.83597 0.83341 0.82375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.96 55.43 0.77 -24.89 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 20.34 27.47 -169.99 -4.67 15.67 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 7 C -0.55 -14.57 9.83 -34.44 -0.34 -14.91 16 8 H 0.08 2.32 7.84 -52.49 -0.41 1.91 16 9 C 0.22 5.01 4.50 -5.20 -0.02 4.98 16 10 N -0.66 -12.91 5.54 -61.95 -0.34 -13.25 16 11 C 0.49 8.64 7.89 -11.63 -0.09 8.55 16 12 O -0.54 -10.20 16.48 5.49 0.09 -10.11 16 13 C 0.51 7.43 7.62 -11.63 -0.09 7.34 16 14 O -0.49 -8.01 14.16 5.47 0.08 -7.93 16 15 N -0.65 -7.20 5.32 -10.29 -0.05 -7.26 16 16 C 0.19 1.95 6.28 -83.74 -0.53 1.42 16 17 C -0.14 -1.08 9.96 -39.37 -0.39 -1.47 16 18 C -0.06 -0.44 9.82 -39.59 -0.39 -0.83 16 19 C -0.09 -0.90 6.33 -39.40 -0.25 -1.15 16 20 Cl -0.05 -0.48 28.61 -51.86 -1.48 -1.97 16 21 C 0.13 1.53 7.27 -39.42 -0.29 1.24 16 22 F -0.12 -1.50 16.83 2.25 0.04 -1.47 16 23 C -0.15 -1.76 8.63 -39.32 -0.34 -2.10 16 24 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.03 0.81 7.20 -51.92 -0.37 0.43 16 26 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 27 H 0.41 7.64 7.79 -40.82 -0.32 7.33 16 28 H 0.43 3.88 8.30 -40.82 -0.34 3.54 16 29 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 30 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.16 2.06 6.41 -52.49 -0.34 1.72 16 LS Contribution 302.25 15.07 4.55 4.55 Total: -1.00 -30.11 302.25 -6.02 -36.13 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -2.18 Total: 5.36 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -2.82 Total: 5.16 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.38 Total: -45.40 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.17 Total: -18.04 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.67 Total: 15.67 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.48 Total: -1.97 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.11 -6.02 -36.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487512365.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.069 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds