Wall clock time and date at job start Tue Mar 31 2020 07:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48502 * 109.46990 * 269.99093 * 3 2 1 5 5 H 1.48498 * 109.47566 * 29.99297 * 3 2 1 6 6 H 1.48503 * 109.47167 * 149.99666 * 3 2 1 7 7 C 1.37878 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99776 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00145 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47123 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00124 * 179.97438 * 10 9 7 12 12 O 1.21361 * 119.99833 * 0.02562 * 11 10 9 13 13 C 1.49350 * 120.00329 * 180.02562 * 11 10 9 14 14 O 1.21381 * 119.99826 * 0.02562 * 13 11 10 15 15 N 1.34775 * 120.00329 * 180.02562 * 13 11 10 16 16 C 1.39757 * 119.99998 * 185.27652 * 15 13 11 17 17 C 1.38957 * 120.04908 * 213.33518 * 16 15 13 18 18 C 1.38091 * 119.98356 * 180.02562 * 17 16 15 19 19 C 1.38371 * 120.08403 * 359.97438 * 18 17 16 20 20 Cl 1.73607 * 119.94495 * 180.27999 * 19 18 17 21 21 C 1.38600 * 120.10643 * 359.97438 * 19 18 17 22 22 F 1.35099 * 119.99038 * 180.02562 * 21 19 18 23 23 C 1.38313 * 120.01425 * 0.02562 * 21 19 18 24 24 H 0.97000 * 119.99740 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.47313 * 60.00051 * 9 7 2 26 26 H 1.08998 * 109.47231 * 300.00166 * 9 7 2 27 27 H 0.96999 * 120.00183 * 0.02562 * 10 9 7 28 28 H 0.97005 * 119.99849 * 5.27615 * 15 13 11 29 29 H 1.08001 * 120.01062 * 0.02562 * 17 16 15 30 30 H 1.07999 * 119.95517 * 180.02562 * 18 17 16 31 31 H 1.07992 * 120.04206 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 5.3250 -2.8215 0.0024 12 8 6.1136 -1.8990 0.0021 13 6 5.8229 -4.2295 0.0029 14 8 5.0341 -5.1521 0.0028 15 7 7.1479 -4.4758 0.0036 16 6 7.6148 -5.7884 -0.1072 17 6 8.7828 -6.1687 0.5425 18 6 9.2431 -7.4659 0.4316 19 6 8.5424 -8.3882 -0.3253 20 17 9.1205 -10.0200 -0.4562 21 6 7.3764 -8.0132 -0.9739 22 9 6.6938 -8.9158 -1.7118 23 6 6.9115 -6.7150 -0.8657 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6799 0.8912 26 1 3.8752 -0.6804 -0.8888 27 1 3.3696 -3.3125 0.0021 28 1 7.7776 -3.7419 0.0810 29 1 9.3305 -5.4499 1.1339 30 1 10.1508 -7.7610 0.9371 31 1 6.0032 -6.4221 -1.3713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487512365.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:07 Heat of formation + Delta-G solvation = -111.733347 kcal Electronic energy + Delta-G solvation = -20620.168937 eV Core-core repulsion = 16841.412511 eV Total energy + Delta-G solvation = -3778.756426 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 300.046 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.11144 -42.24794 -40.50381 -39.32745 -37.69914 -36.65563 -35.74081 -34.43162 -31.95719 -30.91460 -30.22435 -26.58100 -24.61160 -23.97910 -23.01058 -21.60756 -20.38075 -19.30964 -18.69085 -18.09704 -17.69340 -17.48953 -17.05769 -16.88883 -16.72711 -16.67373 -15.90557 -15.58323 -15.07382 -14.92454 -14.61196 -14.44160 -14.20633 -14.02360 -13.49956 -13.32038 -13.12253 -12.93730 -12.71684 -12.69504 -12.01154 -11.91328 -11.70422 -11.42363 -10.93378 -10.84552 -10.20102 -10.08675 -9.38730 -8.39760 -6.49677 -0.44163 -0.05935 0.33170 0.91115 1.13647 1.37324 1.39232 1.50365 1.94453 2.28999 2.34429 2.49876 2.95335 2.97468 3.30849 3.54576 3.86170 3.91450 4.21288 4.53745 4.64466 4.75209 4.84127 4.93973 4.95798 5.00834 5.12079 5.23401 5.52731 5.74083 6.02263 6.38964 6.49781 6.62209 6.85533 7.16875 8.75208 Molecular weight = 300.05amu Principal moments of inertia in cm(-1) A = 0.040169 B = 0.002682 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.895228 B =10437.603454 C =10992.861985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.024 3.976 3 Si 0.944 3.056 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.248 1.248 7 C -0.556 4.556 8 H 0.053 0.947 9 C 0.229 3.771 10 N -0.672 5.672 11 C 0.501 3.499 12 O -0.547 6.547 13 C 0.520 3.480 14 O -0.514 6.514 15 N -0.630 5.630 16 C 0.171 3.829 17 C -0.119 4.119 18 C -0.048 4.048 19 C -0.094 4.094 20 Cl -0.049 7.049 21 C 0.113 3.887 22 F -0.136 7.136 23 C -0.165 4.165 24 H 0.273 0.727 25 H 0.033 0.967 26 H 0.030 0.970 27 H 0.413 0.587 28 H 0.440 0.560 29 H 0.184 0.816 30 H 0.185 0.815 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.492 -14.347 1.134 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.176 4.176 3 Si 0.767 3.233 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.172 1.172 7 C -0.594 4.594 8 H 0.071 0.929 9 C 0.106 3.894 10 N -0.321 5.321 11 C 0.280 3.720 12 O -0.426 6.426 13 C 0.302 3.698 14 O -0.388 6.388 15 N -0.278 5.278 16 C 0.076 3.924 17 C -0.139 4.139 18 C -0.067 4.067 19 C -0.123 4.123 20 Cl -0.021 7.021 21 C 0.092 3.908 22 F -0.114 7.114 23 C -0.186 4.186 24 H 0.082 0.918 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.250 0.750 28 H 0.282 0.718 29 H 0.202 0.798 30 H 0.202 0.798 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 23.271 -14.333 1.081 27.352 hybrid contribution -0.768 0.336 -0.387 0.923 sum 22.503 -13.997 0.694 26.510 Atomic orbital electron populations 1.70002 1.08047 1.28826 1.50221 1.25696 0.95601 1.03073 0.93266 0.85763 0.79500 0.78450 0.79632 1.18804 1.20172 1.17195 1.21261 0.90025 0.94606 1.53498 0.92891 1.19392 0.93506 0.79132 0.97328 1.45979 1.05996 1.11254 1.68900 1.19956 0.83735 0.89032 0.79240 1.90727 1.55378 1.45864 1.50624 1.20198 0.83459 0.89278 0.76832 1.90810 1.55813 1.45758 1.46447 1.43025 1.06728 1.08213 1.69824 1.17643 0.95210 0.83840 0.95723 1.21350 0.95621 0.97302 0.99587 1.21171 0.99915 0.90453 0.95185 1.21180 0.96610 0.89261 1.05226 1.98391 1.87858 1.18624 1.97185 1.17264 0.91493 0.86979 0.95062 1.91522 1.78997 1.66281 1.74617 1.21024 1.03160 0.92031 1.02431 0.91758 0.94927 0.95166 0.75023 0.71831 0.79840 0.79776 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.11 13.96 21.45 0.30 -54.81 16 2 C 0.02 1.32 5.47 84.65 0.46 1.79 16 3 Si 0.94 41.58 27.47 68.60 1.88 43.46 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.25 -10.37 6.54 99.48 0.65 -9.72 16 7 C -0.56 -30.02 9.83 25.60 0.25 -29.77 16 8 H 0.05 3.10 7.84 -2.91 -0.02 3.07 16 9 C 0.23 10.46 4.50 85.63 0.38 10.85 16 10 N -0.67 -26.28 5.54 -468.25 -2.59 -28.88 16 11 C 0.50 17.07 7.89 87.24 0.69 17.76 16 12 O -0.55 -19.92 16.48 -3.28 -0.05 -19.97 16 13 C 0.52 14.72 7.62 87.24 0.66 15.38 16 14 O -0.51 -16.77 14.16 -3.34 -0.05 -16.82 16 15 N -0.63 -12.65 5.32 -304.83 -1.62 -14.27 16 16 C 0.17 3.16 6.28 38.20 0.24 3.40 16 17 C -0.12 -1.30 9.96 22.41 0.22 -1.08 16 18 C -0.05 -0.52 9.82 22.27 0.22 -0.30 16 19 C -0.09 -1.62 6.33 22.39 0.14 -1.47 16 20 Cl -0.05 -0.82 28.61 -2.72 -0.08 -0.90 16 21 C 0.11 2.50 7.27 22.37 0.16 2.66 16 22 F -0.14 -3.43 16.83 44.97 0.76 -2.68 16 23 C -0.17 -3.83 8.63 22.44 0.19 -3.64 16 24 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 25 H 0.03 1.51 7.20 -2.38 -0.02 1.49 16 26 H 0.03 1.39 7.57 -2.39 -0.02 1.37 16 27 H 0.41 15.79 7.79 -92.71 -0.72 15.07 16 28 H 0.44 6.69 8.30 -92.70 -0.77 5.92 16 29 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 30 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 31 H 0.14 3.73 6.41 -2.91 -0.02 3.71 16 Total: -1.00 -66.26 302.25 1.86 -64.41 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -0.32 Total: 14.87 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 3.63 Total: 15.58 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -3.92 Total: -97.96 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -0.10 Total: -36.79 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.76 Total: -2.68 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.88 Total: 43.46 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.90 kcal Total: -66.26 1.86 -64.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487512365.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.324 kcal (2) G-P(sol) polarization free energy of solvation -66.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds