Wall clock time and date at job start Tue Mar 31 2020 07:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35696 * 116.99888 * 2 1 4 4 C 1.38623 * 119.63602 * 180.02562 * 3 2 1 5 5 C 1.39181 * 119.02950 * 179.70228 * 4 3 2 6 6 N 1.39230 * 120.83587 * 180.27079 * 5 4 3 7 7 C 1.46501 * 120.00018 * 0.24423 * 6 5 4 8 8 C 1.52999 * 109.47233 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47217 * 179.97438 * 8 7 6 10 10 H 1.08005 * 120.00114 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00056 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00197 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00082 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47402 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47028 * 119.99804 * 13 11 9 16 16 H 1.48492 * 109.47502 * 239.99983 * 13 11 9 17 17 C 1.39703 * 118.32826 * 0.50440 * 5 4 3 18 18 Br 1.89100 * 120.41136 * 179.78552 * 17 5 4 19 19 C 1.37813 * 119.17926 * 359.51401 * 17 5 4 20 20 N 1.32103 * 120.90164 * 0.22814 * 19 17 5 21 21 H 1.09004 * 109.47448 * 300.00264 * 1 2 3 22 22 H 1.09000 * 109.47382 * 60.00678 * 1 2 3 23 23 H 1.09005 * 109.47220 * 180.02562 * 1 2 3 24 24 H 1.07996 * 120.48216 * 359.97438 * 4 3 2 25 25 H 0.96994 * 119.99865 * 180.23623 * 6 5 4 26 26 H 1.09001 * 109.47147 * 300.00061 * 7 6 5 27 27 H 1.09004 * 109.47577 * 59.99722 * 7 6 5 28 28 H 1.08996 * 109.46819 * 299.99696 * 8 7 6 29 29 H 1.08998 * 109.46848 * 59.99757 * 8 7 6 30 30 H 0.96992 * 120.00258 * 179.97438 * 12 11 9 31 31 H 1.08002 * 119.55436 * 180.25244 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 3.4298 1.2729 -0.0005 5 6 4.0485 2.5196 -0.0069 6 7 5.4366 2.6274 -0.0133 7 6 6.2651 1.4193 -0.0188 8 6 7.7432 1.8145 -0.0246 9 6 8.5955 0.5717 -0.0297 10 1 8.1296 -0.4027 -0.0285 11 6 9.9701 0.6784 -0.0349 12 7 10.5375 1.8649 -0.0359 13 14 11.0266 -0.8620 -0.0405 14 1 10.1519 -2.0622 -0.0389 15 1 11.8792 -0.8731 -1.2563 16 1 11.8885 -0.8756 1.1686 17 6 3.2416 3.6601 -0.0016 18 35 4.0201 5.3834 -0.0036 19 6 1.8713 3.5137 -0.0006 20 7 1.3171 2.3145 -0.0001 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 4.0199 0.3684 -0.0005 25 1 5.8550 3.5025 -0.0142 26 1 6.0511 0.8278 0.8714 27 1 6.0427 0.8301 -0.9085 28 1 7.9575 2.4061 -0.9146 29 1 7.9653 2.4033 0.8653 30 1 11.5045 1.9400 -0.0391 31 1 1.2418 4.3912 -0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596191304.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:59 Heat of formation + Delta-G solvation = -10.199717 kcal Electronic energy + Delta-G solvation = -16017.361391 eV Core-core repulsion = 13152.040413 eV Total energy + Delta-G solvation = -2865.320978 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 300.021 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.53941 -38.20940 -36.18855 -33.38733 -32.08941 -31.16051 -29.54267 -28.38601 -27.04887 -25.02006 -23.12449 -22.02349 -20.91421 -18.48571 -17.28080 -16.49617 -15.99849 -15.64398 -15.27603 -14.70387 -14.45370 -14.43868 -13.85606 -13.63800 -13.44195 -12.33749 -12.18722 -11.78257 -11.70484 -11.29477 -11.24158 -10.88507 -10.67767 -10.59658 -10.40175 -9.95882 -9.73044 -9.55980 -9.34894 -8.50871 -8.40964 -7.63853 -6.15399 -4.19474 1.13342 1.57770 1.75297 3.04060 3.24203 3.32067 3.35710 3.71023 3.80760 4.35221 4.37285 4.90764 5.13348 5.19552 5.21833 5.25525 5.50998 5.61246 5.68477 5.91022 5.96910 6.10905 6.27850 6.55505 7.16996 7.26796 7.50975 7.51212 7.79209 7.84918 7.92016 8.20086 8.86171 9.45995 10.96169 Molecular weight = 300.02amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.004601 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.567697 B = 6084.083181 C = 7928.898676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.305 6.305 3 C 0.365 3.635 4 C -0.271 4.271 5 C 0.314 3.686 6 N -0.708 5.708 7 C 0.116 3.884 8 C 0.013 3.987 9 C -0.524 4.524 10 H 0.060 0.940 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.897 3.103 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.264 4.264 18 Br -0.045 7.045 19 C 0.209 3.791 20 N -0.582 5.582 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.093 0.907 24 H 0.147 0.853 25 H 0.407 0.593 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.262 0.738 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.272 4.629 0.076 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.212 6.212 3 C 0.188 3.812 4 C -0.298 4.298 5 C 0.193 3.807 6 N -0.332 5.332 7 C -0.007 4.007 8 C -0.025 4.025 9 C -0.562 4.562 10 H 0.078 0.922 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.725 3.275 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.352 4.352 18 Br 0.038 6.962 19 C 0.052 3.948 20 N -0.310 5.310 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.111 0.889 24 H 0.165 0.835 25 H 0.245 0.755 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -18.427 4.766 0.074 19.033 hybrid contribution 1.364 -0.601 -0.005 1.490 sum -17.063 4.165 0.069 17.564 Atomic orbital electron populations 1.22833 0.77434 1.02673 1.02441 1.86251 1.22736 1.24741 1.87486 1.19464 0.88654 0.84427 0.88621 1.20309 0.92122 0.97525 1.19868 1.17478 0.85238 0.91374 0.86658 1.45588 1.01270 1.11411 1.74925 1.21966 0.93157 0.85072 1.00474 1.19306 0.87027 0.97998 0.98158 1.21028 0.91068 0.92336 1.51815 0.92155 1.24997 0.98128 0.96227 0.94857 1.69963 1.10505 1.22527 1.50002 0.86452 0.80331 0.83058 0.77692 1.19571 1.20888 1.20884 1.22100 0.96047 0.90662 1.26380 1.96622 1.83046 1.18200 1.98343 1.22000 0.89875 0.94122 0.88829 1.67457 1.39570 0.98013 1.26000 0.92325 0.92321 0.88864 0.83490 0.75520 0.92300 0.92298 0.95767 0.95767 0.92785 0.82132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.46 16 2 O -0.31 -4.21 10.47 -18.79 -0.20 -4.41 16 3 C 0.36 5.49 7.48 -17.18 -0.13 5.36 16 4 C -0.27 -4.30 9.31 -39.09 -0.36 -4.66 16 5 C 0.31 5.05 6.69 -83.60 -0.56 4.49 16 6 N -0.71 -12.28 5.68 -58.46 -0.33 -12.61 16 7 C 0.12 2.25 4.89 -4.04 -0.02 2.23 16 8 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 9 C -0.52 -14.04 9.11 -34.44 -0.31 -14.35 16 10 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 13 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 C -0.26 -3.79 6.26 -39.19 -0.25 -4.04 16 18 Br -0.05 -0.59 32.28 -68.01 -2.20 -2.79 16 19 C 0.21 2.75 10.92 -17.59 -0.19 2.55 16 20 N -0.58 -8.27 9.21 -13.40 -0.12 -8.39 16 21 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 22 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 23 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.15 2.31 6.89 -52.49 -0.36 1.95 16 25 H 0.41 6.98 7.02 -40.82 -0.29 6.69 16 26 H 0.06 1.13 7.98 -51.93 -0.41 0.72 16 27 H 0.06 1.13 8.00 -51.93 -0.42 0.72 16 28 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 31 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 292.00 15.07 4.40 4.40 Total: -1.00 -28.76 292.00 -7.30 -36.06 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -3.55 Total: 2.11 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -1.01 Total: -5.23 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.28 Total: -46.03 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.20 Total: -4.41 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.20 Total: -2.79 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.76 -7.30 -36.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596191304.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.859 kcal (2) G-P(sol) polarization free energy of solvation -28.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds