Wall clock time and date at job start Tue Mar 31 2020 07:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99990 * 2 1 4 4 H 1.48500 * 109.47460 * 270.00072 * 3 2 1 5 5 H 1.48502 * 109.47163 * 30.00450 * 3 2 1 6 6 H 1.48500 * 109.46976 * 149.99962 * 3 2 1 7 7 C 1.37874 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00330 * 173.68818 * 7 2 1 9 9 C 1.50700 * 119.99937 * 353.68328 * 7 2 1 10 10 C 1.53000 * 115.55126 * 85.65853 * 9 7 2 11 11 S 1.81400 * 109.47151 * 65.32571 * 10 9 7 12 12 C 1.81401 * 102.99866 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47074 * 180.02562 * 12 11 10 14 14 C 1.38262 * 119.99144 * 269.72514 * 13 12 11 15 15 C 1.38217 * 120.05565 * 179.72416 * 14 13 12 16 16 C 1.38238 * 120.05569 * 0.55104 * 15 14 13 17 17 C 1.38403 * 119.98230 * 359.72511 * 16 15 14 18 18 F 1.35099 * 120.03284 * 179.97438 * 17 16 15 19 19 C 1.38281 * 119.99251 * 89.99778 * 13 12 11 20 20 Cl 1.73601 * 120.02596 * 0.02562 * 19 13 12 21 21 C 1.53008 * 117.49828 * 231.32522 * 9 7 2 22 22 C 1.53005 * 117.50029 * 299.98326 * 9 7 2 23 23 H 0.97005 * 119.99713 * 355.01959 * 1 2 3 24 24 H 1.09002 * 109.46703 * 305.32990 * 10 9 7 25 25 H 1.08999 * 109.47433 * 185.33138 * 10 9 7 26 26 H 1.09004 * 109.47475 * 60.00306 * 12 11 10 27 27 H 1.09002 * 109.47089 * 299.99891 * 12 11 10 28 28 H 1.07992 * 119.96667 * 359.97438 * 14 13 12 29 29 H 1.08009 * 119.97386 * 180.27294 * 15 14 13 30 30 H 1.07996 * 120.01065 * 179.70532 * 16 15 14 31 31 H 1.08998 * 117.49283 * 215.00330 * 21 9 7 32 32 H 1.08991 * 117.49738 * 0.02562 * 21 9 7 33 33 H 1.08998 * 117.49583 * 359.97438 * 22 9 7 34 34 H 1.09000 * 117.49614 * 144.97301 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0796 -1.1969 -0.1034 9 6 1.2578 -2.4952 0.1425 10 6 0.7094 -3.0877 -1.1572 11 16 2.0892 -3.5544 -2.2384 12 6 1.2523 -4.2238 -3.7020 13 6 2.2810 -4.6639 -4.7116 14 6 2.7338 -3.7753 -5.6692 15 6 3.6815 -4.1758 -6.5922 16 6 4.1698 -5.4688 -6.5665 17 6 3.7137 -6.3616 -5.6124 18 9 4.1898 -7.6257 -5.5867 19 6 2.7677 -5.9579 -4.6835 20 17 2.1936 -7.0761 -3.4860 21 6 1.7410 -3.4727 1.2159 22 6 0.4342 -2.7009 1.4154 23 1 -0.4850 0.8369 0.0729 24 1 0.0880 -2.3469 -1.6604 25 1 0.1111 -3.9701 -0.9303 26 1 0.6175 -3.4543 -4.1414 27 1 0.6402 -5.0778 -3.4117 28 1 2.3497 -2.7663 -5.6934 29 1 4.0376 -3.4793 -7.3369 30 1 4.9068 -5.7824 -7.2911 31 1 1.6681 -4.5378 0.9960 32 1 2.5985 -3.1745 1.8188 33 1 0.4328 -1.8953 2.1496 34 1 -0.4986 -3.2579 1.3268 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596344098.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:37 Heat of formation + Delta-G solvation = -10.690629 kcal Electronic energy + Delta-G solvation = -18948.842259 eV Core-core repulsion = 15720.760589 eV Total energy + Delta-G solvation = -3228.081670 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.045 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.06771 -39.37403 -36.56768 -36.53609 -32.88456 -31.94067 -30.55900 -27.89675 -27.05502 -25.28918 -22.93437 -22.02960 -21.11299 -19.22912 -17.64292 -16.83750 -16.54911 -16.19489 -15.92444 -15.21691 -14.63231 -14.56120 -14.10896 -14.02338 -13.67470 -13.40727 -13.12206 -12.69754 -12.41415 -12.22198 -11.81281 -11.66731 -11.60030 -11.31957 -10.99431 -10.90845 -10.81372 -10.47177 -10.21667 -9.66409 -9.53886 -8.83848 -8.81453 -8.75938 -8.43692 -8.01852 -6.82486 -6.05425 -4.10431 0.76644 0.86463 1.99054 2.37647 3.29661 3.36669 3.36725 3.41385 3.47665 3.89252 4.41196 4.41857 4.61536 4.86407 4.98591 5.23752 5.26874 5.29812 5.38501 5.67560 5.71911 5.82161 5.96397 6.02794 6.18396 6.21090 6.39348 6.52384 6.53724 6.73855 6.80431 7.06260 7.39499 7.48201 7.87981 8.39263 8.91507 9.55717 11.03704 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.020279 B = 0.004201 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.411504 B = 6663.971212 C = 7562.356061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.072 3.928 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.483 4.483 8 H 0.062 0.938 9 C 0.054 3.946 10 C -0.028 4.028 11 S -0.221 6.221 12 C -0.077 4.077 13 C -0.019 4.019 14 C -0.102 4.102 15 C -0.085 4.085 16 C -0.148 4.148 17 C 0.106 3.894 18 F -0.130 7.130 19 C -0.064 4.064 20 Cl -0.041 7.041 21 C -0.204 4.204 22 C -0.148 4.148 23 H 0.259 0.741 24 H 0.084 0.916 25 H 0.048 0.952 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.454 -10.150 -12.698 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.131 4.131 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.521 4.521 8 H 0.080 0.920 9 C 0.053 3.947 10 C -0.177 4.177 11 S 0.010 5.990 12 C -0.224 4.224 13 C -0.021 4.021 14 C -0.122 4.122 15 C -0.104 4.104 16 C -0.168 4.168 17 C 0.086 3.914 18 F -0.108 7.108 19 C -0.094 4.094 20 Cl -0.012 7.012 21 C -0.242 4.242 22 C -0.187 4.187 23 H 0.069 0.931 24 H 0.102 0.898 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.161 0.839 29 H 0.158 0.842 30 H 0.160 0.840 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.315 -10.064 -12.450 16.581 hybrid contribution -0.965 0.496 -0.013 1.085 sum 3.350 -9.569 -12.464 16.066 Atomic orbital electron populations 1.70012 1.05859 1.26777 1.49256 1.24933 0.94759 0.98838 0.94523 0.86668 0.80057 0.83531 0.78212 1.20564 1.21299 1.19838 1.20377 0.92911 0.88440 1.50347 0.92001 1.18449 0.98196 0.93934 0.84162 1.23138 0.95428 1.00428 0.98682 1.87141 1.17449 1.79679 1.14738 1.22406 0.98549 1.04096 0.97340 1.19122 0.96775 0.90737 0.95499 1.21170 0.97157 0.99949 0.93960 1.21083 0.95707 0.95045 0.98528 1.21101 1.02605 0.93795 0.99273 1.17344 0.96262 0.80603 0.97182 1.91526 1.86721 1.36613 1.95934 1.20856 1.00590 0.92936 0.94973 1.98388 1.87511 1.60430 1.54824 1.23020 0.98380 0.95841 1.06943 1.22576 0.92226 1.01178 1.02769 0.93090 0.89750 0.93364 0.88890 0.89212 0.83944 0.84227 0.83993 0.91401 0.90283 0.89792 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.25 12.90 55.43 0.71 -23.53 16 2 C 0.07 1.93 5.39 -17.82 -0.10 1.84 16 3 Si 0.89 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.48 -12.90 8.49 -34.44 -0.29 -13.19 16 8 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 9 C 0.05 1.31 1.34 -155.65 -0.21 1.10 16 10 C -0.03 -0.62 5.80 37.16 0.22 -0.41 16 11 S -0.22 -4.32 21.41 -107.50 -2.30 -6.62 16 12 C -0.08 -1.16 5.67 36.01 0.20 -0.96 16 13 C -0.02 -0.26 5.14 -104.60 -0.54 -0.80 16 14 C -0.10 -1.18 9.70 -39.58 -0.38 -1.57 16 15 C -0.09 -0.81 10.04 -39.59 -0.40 -1.21 16 16 C -0.15 -1.48 10.03 -39.52 -0.40 -1.88 16 17 C 0.11 1.33 7.28 -39.39 -0.29 1.05 16 18 F -0.13 -1.68 16.84 2.25 0.04 -1.64 16 19 C -0.06 -0.89 6.32 -39.43 -0.25 -1.14 16 20 Cl -0.04 -0.58 26.96 -51.86 -1.40 -1.98 16 21 C -0.20 -4.48 9.96 -26.69 -0.27 -4.74 16 22 C -0.15 -3.40 9.40 -26.69 -0.25 -3.65 16 23 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 24 H 0.08 1.98 8.14 -51.92 -0.42 1.56 16 25 H 0.05 0.97 8.09 -51.92 -0.42 0.55 16 26 H 0.09 1.31 8.08 -51.92 -0.42 0.89 16 27 H 0.09 1.32 6.90 -51.92 -0.36 0.96 16 28 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 30 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 33 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 327.63 15.07 4.94 4.94 Total: -1.00 -28.15 327.63 -10.10 -38.25 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -4.13 Total: 0.27 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -2.95 Total: -25.54 kcal Atomic # 7 Polarization: -24.25 SS G_CDS: 0.71 Total: -23.53 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -4.32 SS G_CDS: -2.30 Total: -6.62 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.40 Total: -1.98 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.15 -10.10 -38.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596344098.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.560 kcal (2) G-P(sol) polarization free energy of solvation -28.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds