Wall clock time and date at job start Tue Mar 31 2020 07:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00379 * 2 1 4 4 H 1.48499 * 109.47265 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47080 * 300.00010 * 3 2 1 6 6 H 1.48499 * 109.47045 * 59.99792 * 3 2 1 7 7 C 1.37872 * 119.99497 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00416 * 173.69129 * 7 2 1 9 9 C 1.50697 * 120.00314 * 353.69265 * 7 2 1 10 10 C 1.53005 * 115.55115 * 85.65440 * 9 7 2 11 11 S 1.81394 * 109.47099 * 65.33636 * 10 9 7 12 12 C 1.81399 * 103.00136 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47395 * 179.97438 * 12 11 10 14 14 C 1.38212 * 119.98962 * 269.72340 * 13 12 11 15 15 C 1.38435 * 119.98442 * 179.78656 * 14 13 12 16 16 F 1.35101 * 120.01712 * 180.20893 * 15 14 13 17 17 C 1.38482 * 119.97564 * 0.48985 * 15 14 13 18 18 C 1.38168 * 119.98544 * 359.74056 * 17 15 14 19 19 C 1.38328 * 119.99381 * 89.99734 * 13 12 11 20 20 Cl 1.73599 * 119.98799 * 0.02562 * 19 13 12 21 21 C 1.53006 * 117.50194 * 231.32465 * 9 7 2 22 22 C 1.52999 * 117.50009 * 299.98677 * 9 7 2 23 23 H 0.97009 * 119.99382 * 354.97563 * 1 2 3 24 24 H 1.09000 * 109.47085 * 185.33400 * 10 9 7 25 25 H 1.09003 * 109.47131 * 305.33702 * 10 9 7 26 26 H 1.08994 * 109.46959 * 299.99896 * 12 11 10 27 27 H 1.09001 * 109.47404 * 59.99870 * 12 11 10 28 28 H 1.07998 * 120.01280 * 359.97438 * 14 13 12 29 29 H 1.07996 * 120.00887 * 179.72572 * 17 15 14 30 30 H 1.08006 * 119.99279 * 180.02562 * 18 17 15 31 31 H 1.09004 * 117.49816 * 215.00243 * 21 9 7 32 32 H 1.08992 * 117.49283 * 0.02562 * 21 9 7 33 33 H 1.09003 * 117.50069 * 359.97438 * 22 9 7 34 34 H 1.08999 * 117.49836 * 144.97386 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0795 -1.1970 -0.1033 9 6 1.2577 -2.4952 0.1423 10 6 0.7095 -3.0876 -1.1576 11 16 2.0893 -3.5544 -2.2386 12 6 1.2526 -4.2236 -3.7024 13 6 2.2814 -4.6626 -4.7123 14 6 2.7333 -3.7736 -5.6693 15 6 3.6816 -4.1757 -6.5942 16 9 4.1269 -3.3060 -7.5272 17 6 4.1694 -5.4715 -6.5664 18 6 3.7133 -6.3607 -5.6122 19 6 2.7690 -5.9568 -4.6849 20 17 2.1951 -7.0751 -3.4875 21 6 1.7407 -3.4729 1.2156 22 6 0.4339 -2.7010 1.4150 23 1 -0.4850 0.8370 0.0736 24 1 0.1111 -3.9699 -0.9308 25 1 0.0882 -2.3467 -1.6609 26 1 0.6404 -5.0774 -3.4122 27 1 0.6180 -3.4541 -4.1418 28 1 2.3490 -2.7647 -5.6936 29 1 4.9059 -5.7870 -7.2904 30 1 4.0940 -7.3712 -5.5902 31 1 1.6678 -4.5380 0.9956 32 1 2.5982 -3.1747 1.8186 33 1 0.4323 -1.8954 2.1493 34 1 -0.4988 -3.2580 1.3262 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596355074.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:50 Heat of formation + Delta-G solvation = -12.673555 kcal Electronic energy + Delta-G solvation = -18888.176519 eV Core-core repulsion = 15660.008863 eV Total energy + Delta-G solvation = -3228.167656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.045 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.04974 -39.41340 -36.57056 -36.45462 -33.02004 -31.93808 -30.50052 -27.89846 -27.05888 -25.28877 -23.04811 -21.95495 -21.11665 -19.23089 -17.55922 -16.85992 -16.69408 -16.19598 -15.81719 -15.23080 -14.63546 -14.50101 -14.07413 -13.95679 -13.71147 -13.48035 -13.11868 -12.85425 -12.64032 -12.29210 -11.81431 -11.66354 -11.39764 -11.26940 -11.01281 -10.88208 -10.81272 -10.46737 -10.22043 -9.65229 -9.58644 -9.02852 -8.81938 -8.61192 -8.43924 -8.01900 -6.82701 -6.05334 -4.10290 0.73109 0.88065 2.03926 2.36507 3.29108 3.34002 3.37967 3.43319 3.46382 3.99416 4.39052 4.42146 4.49859 4.83276 5.00786 5.24037 5.26806 5.35035 5.38740 5.58141 5.76986 5.83009 5.85609 5.96110 6.10049 6.20598 6.39060 6.52077 6.53486 6.73377 6.80165 7.06000 7.39343 7.48040 7.88493 8.39287 8.92106 9.56102 11.03832 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.016126 B = 0.004515 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.897501 B = 6199.382675 C = 7523.847997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.072 3.928 3 Si 0.887 3.113 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.483 4.483 8 H 0.063 0.937 9 C 0.054 3.946 10 C -0.029 4.029 11 S -0.220 6.220 12 C -0.077 4.077 13 C -0.017 4.017 14 C -0.127 4.127 15 C 0.105 3.895 16 F -0.136 7.136 17 C -0.147 4.147 18 C -0.082 4.082 19 C -0.037 4.037 20 Cl -0.052 7.052 21 C -0.204 4.204 22 C -0.148 4.148 23 H 0.259 0.741 24 H 0.048 0.952 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.148 0.852 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.515 -12.427 -11.685 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.131 4.131 3 Si 0.715 3.285 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.520 4.520 8 H 0.081 0.919 9 C 0.052 3.948 10 C -0.177 4.177 11 S 0.010 5.990 12 C -0.224 4.224 13 C -0.019 4.019 14 C -0.148 4.148 15 C 0.085 3.915 16 F -0.114 7.114 17 C -0.167 4.167 18 C -0.101 4.101 19 C -0.066 4.066 20 Cl -0.023 7.023 21 C -0.242 4.242 22 C -0.188 4.188 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.166 0.834 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.379 -12.252 -11.484 17.354 hybrid contribution -0.984 0.948 -0.211 1.383 sum 3.395 -11.304 -11.694 16.615 Atomic orbital electron populations 1.70024 1.05859 1.26680 1.49335 1.24935 0.94762 0.98862 0.94516 0.86607 0.80494 0.83898 0.77523 1.19590 1.21037 1.21050 1.20425 0.92957 0.88430 1.50221 0.91932 1.18455 0.98202 0.93951 0.84165 1.23139 0.95425 1.00440 0.98675 1.87142 1.17431 1.79740 1.14652 1.22407 0.98547 1.04169 0.97310 1.19014 0.96803 0.91287 0.94806 1.21038 0.97865 1.01215 0.94640 1.17661 0.96680 0.87914 0.89218 1.91519 1.87969 1.68769 1.63153 1.21047 1.02554 0.92005 1.01085 1.20839 0.95530 1.00441 0.93283 1.20814 0.99838 0.91452 0.94447 1.98382 1.87784 1.60622 1.55507 1.23019 0.98375 0.95825 1.06932 1.22576 0.92225 1.01182 1.02777 0.93146 0.93337 0.89765 0.89011 0.89033 0.83403 0.83939 0.83914 0.91393 0.90287 0.89797 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.39 12.90 55.43 0.71 -23.68 16 2 C 0.07 1.94 5.39 -17.82 -0.10 1.84 16 3 Si 0.89 21.09 29.55 -169.99 -5.02 16.06 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.48 -12.94 8.49 -34.44 -0.29 -13.24 16 8 H 0.06 1.73 7.82 -52.48 -0.41 1.32 16 9 C 0.05 1.30 1.34 -155.66 -0.21 1.09 16 10 C -0.03 -0.62 5.80 37.16 0.22 -0.41 16 11 S -0.22 -4.31 21.41 -107.50 -2.30 -6.61 16 12 C -0.08 -1.17 5.67 36.01 0.20 -0.96 16 13 C -0.02 -0.23 5.14 -104.60 -0.54 -0.77 16 14 C -0.13 -1.64 9.68 -39.52 -0.38 -2.02 16 15 C 0.10 1.25 7.30 -39.42 -0.29 0.96 16 16 F -0.14 -1.68 17.27 2.25 0.04 -1.64 16 17 C -0.15 -1.46 10.03 -39.52 -0.40 -1.86 16 18 C -0.08 -0.83 9.83 -39.56 -0.39 -1.22 16 19 C -0.04 -0.46 6.31 -39.50 -0.25 -0.71 16 20 Cl -0.05 -0.65 27.29 -51.86 -1.42 -2.07 16 21 C -0.20 -4.44 9.96 -26.69 -0.27 -4.70 16 22 C -0.15 -3.39 9.40 -26.69 -0.25 -3.64 16 23 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 24 H 0.05 0.97 8.09 -51.92 -0.42 0.55 16 25 H 0.08 1.99 8.14 -51.92 -0.42 1.57 16 26 H 0.09 1.31 6.90 -51.93 -0.36 0.95 16 27 H 0.09 1.32 8.08 -51.92 -0.42 0.90 16 28 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -27.92 328.17 -10.10 -38.03 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -4.13 Total: 0.58 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -2.94 Total: -25.63 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.71 Total: -23.68 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -4.31 SS G_CDS: -2.30 Total: -6.61 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.42 Total: -2.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.92 -10.10 -38.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596355074.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.353 kcal (2) G-P(sol) polarization free energy of solvation -27.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds