Wall clock time and date at job start Tue Mar 31 2020 07:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00322 * 2 1 4 4 H 1.48501 * 109.46806 * 269.99892 * 3 2 1 5 5 H 1.48500 * 109.46799 * 29.99674 * 3 2 1 6 6 H 1.48494 * 109.47248 * 149.99849 * 3 2 1 7 7 C 1.37878 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99953 * 173.69305 * 7 2 1 9 9 C 1.50699 * 120.00164 * 353.68896 * 7 2 1 10 10 C 1.53002 * 115.55044 * 85.65016 * 9 7 2 11 11 S 1.81405 * 109.46831 * 65.33288 * 10 9 7 12 12 C 1.81400 * 102.99750 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47194 * 180.02562 * 12 11 10 14 14 C 1.38264 * 119.97847 * 89.99436 * 13 12 11 15 15 C 1.38210 * 120.06230 * 179.72351 * 14 13 12 16 16 C 1.38325 * 120.01646 * 0.30297 * 15 14 13 17 17 Cl 1.73594 * 120.02594 * 179.97438 * 16 15 14 18 18 C 1.38544 * 119.94657 * 359.97438 * 16 15 14 19 19 F 1.35105 * 120.03023 * 180.02562 * 18 16 15 20 20 C 1.38197 * 119.97587 * 270.27634 * 13 12 11 21 21 C 1.52999 * 117.49888 * 231.32109 * 9 7 2 22 22 C 1.53003 * 117.49799 * 299.98343 * 9 7 2 23 23 H 0.97003 * 119.99142 * 355.02386 * 1 2 3 24 24 H 1.08993 * 109.46867 * 305.33420 * 10 9 7 25 25 H 1.08992 * 109.46923 * 185.32933 * 10 9 7 26 26 H 1.08996 * 109.47097 * 59.99974 * 12 11 10 27 27 H 1.09000 * 109.47066 * 300.00274 * 12 11 10 28 28 H 1.08000 * 119.96685 * 0.02562 * 14 13 12 29 29 H 1.08002 * 119.99289 * 180.28135 * 15 14 13 30 30 H 1.07998 * 120.00702 * 359.97438 * 20 13 12 31 31 H 1.08993 * 117.50061 * 214.99872 * 21 9 7 32 32 H 1.08996 * 117.49945 * 0.02634 * 21 9 7 33 33 H 1.09000 * 117.49781 * 359.97278 * 22 9 7 34 34 H 1.09000 * 117.49802 * 144.97727 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0796 -1.1970 -0.1022 9 6 1.2578 -2.4951 0.1446 10 6 0.7094 -3.0886 -1.1547 11 16 2.0893 -3.5563 -2.2355 12 6 1.2524 -4.2283 -3.6979 13 6 2.2811 -4.6694 -4.7069 14 6 2.7681 -5.9630 -4.6767 15 6 3.7074 -6.3711 -5.6049 16 6 4.1659 -5.4834 -6.5615 17 17 5.3461 -5.9954 -7.7271 18 6 3.6825 -4.1853 -6.5887 19 9 4.1288 -3.3170 -7.5227 20 6 2.7413 -3.7788 -5.6583 21 6 1.7410 -3.4717 1.2187 22 6 0.4341 -2.6997 1.4176 23 1 -0.4849 0.8370 0.0729 24 1 0.0881 -2.3482 -1.6584 25 1 0.1112 -3.9708 -0.9270 26 1 0.6172 -3.4597 -4.1382 27 1 0.6407 -5.0820 -3.4062 28 1 2.4107 -6.6567 -3.9301 29 1 4.0837 -7.3832 -5.5831 30 1 2.3635 -2.7673 -5.6787 31 1 1.6681 -4.5370 0.9998 32 1 2.5986 -3.1730 1.8214 33 1 0.4327 -1.8935 2.1511 34 1 -0.4986 -3.2569 1.3295 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596355682.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:30 Heat of formation + Delta-G solvation = -23.864747 kcal Electronic energy + Delta-G solvation = -18660.140133 eV Core-core repulsion = 15431.487191 eV Total energy + Delta-G solvation = -3228.652943 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.045 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.05426 -40.29781 -38.38833 -37.67107 -33.97905 -33.65575 -31.76508 -29.48868 -28.11795 -27.26522 -24.06894 -22.92036 -22.86723 -21.08090 -18.69874 -18.07521 -17.78053 -17.45636 -16.96760 -16.71589 -16.58663 -15.71998 -15.34335 -15.05947 -15.03247 -14.88008 -14.42380 -14.08196 -13.95405 -13.59053 -13.27716 -13.02450 -12.95633 -12.83161 -12.52189 -12.44245 -12.27915 -11.98795 -11.96931 -11.49690 -10.98530 -10.69828 -10.44547 -10.02750 -9.83230 -9.59947 -8.38131 -8.10501 -6.19598 -0.30554 0.02925 0.92350 1.03064 1.40040 1.43180 1.51481 1.92499 2.44265 2.48431 2.96343 3.18913 3.46040 3.57103 3.62024 3.99580 4.10380 4.22905 4.25403 4.46208 4.47900 4.63730 4.64483 4.71800 4.78861 4.91239 4.98201 4.99373 5.03474 5.26531 5.33921 5.61620 5.62767 5.65743 5.79553 6.40796 6.84538 7.48395 8.97452 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.003483 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.854261 B = 8037.912062 C = 8886.676586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.032 3.968 3 Si 0.938 3.062 4 H -0.280 1.280 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.495 4.495 8 H 0.045 0.955 9 C 0.028 3.972 10 C -0.018 4.018 11 S -0.264 6.264 12 C -0.054 4.054 13 C -0.034 4.034 14 C -0.094 4.094 15 C -0.074 4.074 16 C -0.081 4.081 17 Cl -0.052 7.052 18 C 0.091 3.909 19 F -0.138 7.138 20 C -0.135 4.135 21 C -0.182 4.182 22 C -0.152 4.152 23 H 0.259 0.741 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.167 0.833 29 H 0.174 0.826 30 H 0.143 0.857 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.535 -14.447 -11.861 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.168 4.168 3 Si 0.764 3.236 4 H -0.206 1.206 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.533 4.533 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.167 4.167 11 S -0.033 6.033 12 C -0.201 4.201 13 C -0.036 4.036 14 C -0.113 4.113 15 C -0.092 4.092 16 C -0.109 4.109 17 Cl -0.023 7.023 18 C 0.071 3.929 19 F -0.116 7.116 20 C -0.156 4.156 21 C -0.219 4.219 22 C -0.192 4.192 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.132 0.868 28 H 0.184 0.816 29 H 0.191 0.809 30 H 0.161 0.839 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.561 -14.205 -11.861 19.060 hybrid contribution -0.847 1.560 -0.365 1.812 sum 3.715 -12.645 -12.227 17.977 Atomic orbital electron populations 1.70082 1.06685 1.27242 1.50215 1.25498 0.95461 1.01318 0.94559 0.85880 0.79040 0.80611 0.78052 1.20569 1.20787 1.19757 1.20567 0.92396 0.90315 1.50047 0.93688 1.18536 0.99133 0.93924 0.85754 1.22828 0.95721 1.00336 0.97785 1.87194 1.18193 1.80645 1.17298 1.22350 0.98544 1.04460 0.94727 1.19247 0.96602 0.94009 0.93703 1.21401 0.95879 0.95374 0.98692 1.21262 0.95772 1.00406 0.91802 1.21176 0.98476 0.93673 0.97620 1.98379 1.55927 1.90511 1.57482 1.17494 0.98059 0.86922 0.90392 1.91509 1.88049 1.68819 1.63249 1.21122 0.97662 1.01696 0.95113 1.23001 0.97275 0.96729 1.04942 1.22511 0.93609 1.01133 1.01903 0.93187 0.92634 0.91177 0.89180 0.86777 0.81552 0.80879 0.83884 0.88735 0.90818 0.92168 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.07 12.90 21.45 0.28 -49.79 16 2 C 0.03 1.72 5.39 84.65 0.46 2.18 16 3 Si 0.94 43.39 29.55 68.60 2.03 45.41 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.50 -26.54 8.49 25.60 0.22 -26.32 16 8 H 0.04 2.50 7.82 -2.91 -0.02 2.48 16 9 C 0.03 1.31 1.34 -52.93 -0.07 1.24 16 10 C -0.02 -0.76 5.80 71.98 0.42 -0.34 16 11 S -0.26 -9.56 21.41 -56.49 -1.21 -10.77 16 12 C -0.05 -1.36 6.07 71.23 0.43 -0.93 16 13 C -0.03 -0.78 5.14 -19.87 -0.10 -0.88 16 14 C -0.09 -1.68 9.70 22.27 0.22 -1.46 16 15 C -0.07 -1.25 9.83 22.28 0.22 -1.03 16 16 C -0.08 -1.73 6.33 22.36 0.14 -1.59 16 17 Cl -0.05 -1.04 28.62 -2.72 -0.08 -1.12 16 18 C 0.09 2.28 7.28 22.39 0.16 2.44 16 19 F -0.14 -3.73 16.84 44.97 0.76 -2.98 16 20 C -0.14 -3.37 9.68 22.31 0.22 -3.15 16 21 C -0.18 -7.45 9.96 30.62 0.30 -7.14 16 22 C -0.15 -6.74 9.40 30.62 0.29 -6.45 16 23 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16 24 H 0.05 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.07 2.52 8.09 -2.39 -0.02 2.50 16 26 H 0.09 2.30 8.09 -2.39 -0.02 2.28 16 27 H 0.11 2.32 8.08 -2.39 -0.02 2.30 16 28 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 29 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 30 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 31 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -59.28 330.31 5.77 -53.51 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.10 Total: 9.17 kcal Atomic # 6 Polarization: -46.34 SS G_CDS: 2.90 Total: -43.44 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.28 Total: -49.79 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.76 Total: -2.98 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -9.56 SS G_CDS: -1.21 Total: -10.77 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -59.28 5.77 -53.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596355682.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.645 kcal (2) G-P(sol) polarization free energy of solvation -59.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds