Wall clock time and date at job start Tue Mar 31 2020 07:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00144 * 2 1 4 4 H 1.48499 * 109.47242 * 239.99855 * 3 2 1 5 5 H 1.48498 * 109.47162 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47074 * 119.99996 * 3 2 1 7 7 C 1.37882 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00280 * 173.69647 * 7 2 1 9 9 C 1.50702 * 120.00024 * 353.69342 * 7 2 1 10 10 C 1.53003 * 115.54714 * 85.65922 * 9 7 2 11 11 S 1.81402 * 109.47446 * 65.33106 * 10 9 7 12 12 C 1.81397 * 103.00011 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.46747 * 180.02562 * 12 11 10 14 14 C 1.38267 * 119.97189 * 90.00062 * 13 12 11 15 15 C 1.38187 * 120.05176 * 179.74331 * 14 13 12 16 16 C 1.38448 * 119.98880 * 0.25069 * 15 14 13 17 17 F 1.35101 * 120.03336 * 179.97438 * 16 15 14 18 18 C 1.38549 * 119.93614 * 0.02562 * 16 15 14 19 19 Cl 1.73595 * 120.02409 * 180.02562 * 18 16 15 20 20 C 1.38215 * 119.97031 * 270.25168 * 13 12 11 21 21 C 1.52995 * 117.50178 * 231.32461 * 9 7 2 22 22 C 1.52996 * 117.50212 * 299.98995 * 9 7 2 23 23 H 0.96997 * 119.99907 * 354.97319 * 1 2 3 24 24 H 1.09010 * 109.46973 * 305.32956 * 10 9 7 25 25 H 1.09000 * 109.47011 * 185.33268 * 10 9 7 26 26 H 1.08999 * 109.47216 * 60.00108 * 12 11 10 27 27 H 1.09005 * 109.46816 * 299.99959 * 12 11 10 28 28 H 1.07998 * 119.97279 * 0.02562 * 14 13 12 29 29 H 1.08001 * 120.00889 * 180.23422 * 15 14 13 30 30 H 1.08001 * 119.99337 * 359.97438 * 20 13 12 31 31 H 1.08998 * 117.50142 * 215.00562 * 21 9 7 32 32 H 1.09004 * 117.49709 * 0.03221 * 21 9 7 33 33 H 1.09005 * 117.49784 * 359.97438 * 22 9 7 34 34 H 1.08997 * 117.50280 * 144.96804 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0796 -1.1970 -0.1032 9 6 1.2578 -2.4953 0.1422 10 6 0.7098 -3.0876 -1.1577 11 16 2.0897 -3.5543 -2.2387 12 6 1.2531 -4.2235 -3.7025 13 6 2.2820 -4.6635 -4.7118 14 6 2.7682 -5.9576 -4.6834 15 6 3.7078 -6.3643 -5.6114 16 6 4.1668 -5.4742 -6.5673 17 9 5.0858 -5.8707 -7.4747 18 6 3.6835 -4.1759 -6.5918 19 17 4.2569 -3.0581 -7.7897 20 6 2.7427 -3.7716 -5.6619 21 6 1.7408 -3.4729 1.2155 22 6 0.4339 -2.7011 1.4149 23 1 -0.4850 0.8368 0.0736 24 1 0.0884 -2.3467 -1.6609 25 1 0.1113 -3.9700 -0.9309 26 1 0.6185 -3.4539 -4.1419 27 1 0.6408 -5.0774 -3.4124 28 1 2.4100 -6.6523 -3.9381 29 1 4.0843 -7.3764 -5.5909 30 1 2.3649 -2.7600 -5.6808 31 1 1.6680 -4.5380 0.9956 32 1 2.5983 -3.1747 1.8187 33 1 0.4323 -1.8955 2.1492 34 1 -0.4988 -3.2581 1.3261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596357725.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:26 Heat of formation + Delta-G solvation = -13.051695 kcal Electronic energy + Delta-G solvation = -18661.785747 eV Core-core repulsion = 15433.601693 eV Total energy + Delta-G solvation = -3228.184054 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.045 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.10021 -39.39814 -36.71908 -36.59881 -32.56823 -31.95712 -31.12799 -27.85562 -26.75314 -25.29438 -23.35123 -21.86770 -21.15057 -19.24740 -17.95691 -16.84326 -16.50623 -15.94310 -15.91204 -15.25773 -14.65036 -14.43600 -14.22579 -13.90520 -13.74140 -13.57945 -13.26943 -12.88946 -12.63114 -12.25057 -11.87636 -11.67279 -11.50366 -11.28607 -11.05326 -11.00872 -10.89054 -10.50498 -10.23870 -9.68776 -9.53392 -9.13535 -8.86039 -8.61286 -8.44535 -8.04844 -6.90217 -6.06914 -4.12186 0.70406 0.88994 1.85125 2.30703 3.31677 3.33222 3.35852 3.40059 3.45639 3.90814 4.40765 4.42506 4.50772 4.86463 4.96917 5.15324 5.22252 5.34649 5.48887 5.57175 5.72937 5.76938 5.88849 5.91775 6.16323 6.24750 6.35239 6.48113 6.50150 6.69423 6.76706 7.03038 7.36311 7.45273 7.86573 8.36825 8.89652 9.54320 11.02137 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.003766 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.859191 B = 7433.032617 C = 8516.583823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.485 4.485 8 H 0.062 0.938 9 C 0.055 3.945 10 C -0.029 4.029 11 S -0.230 6.230 12 C -0.069 4.069 13 C -0.052 4.052 14 C -0.072 4.072 15 C -0.141 4.141 16 C 0.102 3.898 17 F -0.130 7.130 18 C -0.071 4.071 19 Cl -0.053 7.053 20 C -0.066 4.066 21 C -0.205 4.205 22 C -0.148 4.148 23 H 0.260 0.740 24 H 0.084 0.916 25 H 0.048 0.952 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 -11.372 -11.531 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.130 4.130 3 Si 0.715 3.285 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.523 4.523 8 H 0.080 0.920 9 C 0.053 3.947 10 C -0.177 4.177 11 S 0.001 5.999 12 C -0.216 4.216 13 C -0.054 4.054 14 C -0.092 4.092 15 C -0.160 4.160 16 C 0.081 3.919 17 F -0.109 7.109 18 C -0.099 4.099 19 Cl -0.024 7.024 20 C -0.087 4.087 21 C -0.242 4.242 22 C -0.188 4.188 23 H 0.070 0.930 24 H 0.103 0.897 25 H 0.067 0.933 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.159 0.841 29 H 0.162 0.838 30 H 0.165 0.835 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.848 -11.036 -11.554 16.435 hybrid contribution -0.763 0.920 -0.397 1.260 sum 3.085 -10.116 -11.950 15.958 Atomic orbital electron populations 1.69994 1.05859 1.26945 1.49095 1.24928 0.94763 0.98850 0.94445 0.86728 0.79758 0.83166 0.78864 1.19972 1.21359 1.20254 1.20346 0.92902 0.88459 1.50580 0.92033 1.18435 0.98158 0.93918 0.84145 1.23151 0.95374 1.00480 0.98717 1.87205 1.17756 1.80162 1.14780 1.22320 0.98443 1.03753 0.97118 1.19344 0.97670 0.93364 0.95025 1.21031 0.95073 0.95725 0.97360 1.21073 0.99563 1.00102 0.95279 1.17406 0.91628 0.91989 0.90828 1.91524 1.63491 1.90938 1.64925 1.20923 1.01788 0.90421 0.96741 1.98385 1.88052 1.61029 1.54918 1.20926 0.94603 1.00761 0.92388 1.23022 0.98425 0.95772 1.06992 1.22579 0.92197 1.01195 1.02818 0.93009 0.89718 0.93341 0.89208 0.89513 0.84060 0.83752 0.83532 0.91428 0.90281 0.89785 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.10 12.90 55.43 0.71 -23.39 16 2 C 0.07 1.95 5.39 -17.82 -0.10 1.85 16 3 Si 0.89 20.90 29.55 -169.99 -5.02 15.87 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.49 -12.83 8.49 -34.44 -0.29 -13.13 16 8 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 9 C 0.06 1.30 1.34 -155.66 -0.21 1.09 16 10 C -0.03 -0.61 5.80 37.16 0.22 -0.39 16 11 S -0.23 -4.28 21.41 -107.50 -2.30 -6.58 16 12 C -0.07 -0.94 6.07 36.00 0.22 -0.72 16 13 C -0.05 -0.65 5.14 -104.62 -0.54 -1.19 16 14 C -0.07 -0.77 9.70 -39.59 -0.38 -1.15 16 15 C -0.14 -1.44 10.03 -39.52 -0.40 -1.84 16 16 C 0.10 1.23 7.28 -39.39 -0.29 0.94 16 17 F -0.13 -1.61 16.84 2.25 0.04 -1.57 16 18 C -0.07 -0.89 6.33 -39.44 -0.25 -1.14 16 19 Cl -0.05 -0.65 28.62 -51.86 -1.48 -2.13 16 20 C -0.07 -0.84 9.48 -39.56 -0.38 -1.22 16 21 C -0.20 -4.33 9.96 -26.69 -0.27 -4.60 16 22 C -0.15 -3.32 9.40 -26.69 -0.25 -3.57 16 23 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 24 H 0.08 1.95 8.14 -51.92 -0.42 1.52 16 25 H 0.05 0.92 8.09 -51.92 -0.42 0.50 16 26 H 0.09 1.20 8.09 -51.92 -0.42 0.78 16 27 H 0.09 1.03 8.08 -51.92 -0.42 0.61 16 28 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 29 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 330.31 15.07 4.98 4.98 Total: -1.00 -27.52 330.31 -10.17 -37.69 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.19 Total: 0.20 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -2.91 Total: -25.07 kcal Atomic # 7 Polarization: -24.10 SS G_CDS: 0.71 Total: -23.39 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -4.28 SS G_CDS: -2.30 Total: -6.58 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.48 Total: -2.13 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.52 -10.17 -37.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596357725.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.641 kcal (2) G-P(sol) polarization free energy of solvation -27.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds