Wall clock time and date at job start Tue Mar 31 2020 07:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99928 * 2 1 4 4 H 1.48503 * 109.47179 * 239.99809 * 3 2 1 5 5 H 1.48496 * 109.47173 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47227 * 120.00071 * 3 2 1 7 7 C 1.37875 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99482 * 175.04854 * 7 2 1 9 9 C 1.50698 * 120.00456 * 355.31664 * 7 2 1 10 10 C 1.53001 * 115.55353 * 279.19069 * 9 7 2 11 11 N 1.46501 * 109.46652 * 302.40736 * 10 9 7 12 12 C 1.34782 * 119.99714 * 184.82707 * 11 10 9 13 13 O 1.21603 * 119.99801 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99892 * 180.02562 * 12 11 10 15 15 C 1.40838 * 119.99957 * 185.57972 * 14 12 11 16 16 C 1.33787 * 122.61752 * 7.32596 * 15 14 12 17 17 S 1.75866 * 109.60822 * 179.97438 * 16 15 14 18 18 C 1.75860 * 91.05630 * 359.97438 * 17 16 15 19 19 C 1.33424 * 109.70265 * 359.75589 * 18 17 16 20 20 Cl 1.73596 * 122.56676 * 180.21663 * 19 18 17 21 21 C 1.53005 * 117.49939 * 133.47777 * 9 7 2 22 22 C 1.52999 * 117.49535 * 64.85646 * 9 7 2 23 23 H 0.97001 * 119.99973 * 4.99885 * 1 2 3 24 24 H 1.09002 * 109.47157 * 62.40603 * 10 9 7 25 25 H 1.08998 * 109.46921 * 182.40911 * 10 9 7 26 26 H 0.96998 * 120.00331 * 4.83035 * 11 10 9 27 27 H 0.96993 * 120.00049 * 5.57683 * 14 12 11 28 28 H 1.07992 * 125.19478 * 359.97438 * 16 15 14 29 29 H 1.07997 * 125.14780 * 179.97438 * 18 17 16 30 30 H 1.09000 * 117.49291 * 0.02562 * 21 9 7 31 31 H 1.08997 * 117.49637 * 145.02251 * 21 9 7 32 32 H 1.09000 * 117.49950 * 214.97479 * 22 9 7 33 33 H 1.08999 * 117.49994 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1958 -0.0813 9 6 1.2548 -2.4970 0.1054 10 6 0.8322 -2.9022 1.5190 11 7 2.0162 -2.9848 2.3777 12 6 1.8986 -3.4210 3.6476 13 8 0.8097 -3.7464 4.0803 14 7 2.9878 -3.4965 4.4378 15 6 2.8869 -4.0616 5.7239 16 6 1.7766 -4.6670 6.1606 17 16 2.0260 -5.2441 7.8030 18 6 3.6688 -4.6164 7.8088 19 6 3.9342 -4.0399 6.6351 20 17 5.4693 -3.3127 6.2772 21 6 1.6410 -3.6153 -0.8648 22 6 0.3179 -2.8686 -1.0457 23 1 -0.4850 0.8369 -0.0732 24 1 0.1438 -2.1581 1.9198 25 1 0.3386 -3.8735 1.4862 26 1 2.8848 -2.7256 2.0325 27 1 3.8411 -3.1617 4.1208 28 1 0.8663 -4.7834 5.5914 29 1 4.3595 -4.6898 8.6358 30 1 2.4377 -3.4086 -1.5794 31 1 1.5944 -4.6399 -0.4960 32 1 -0.5992 -3.4021 -0.7961 33 1 0.2435 -2.1704 -1.8794 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603170082.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:03 Heat of formation + Delta-G solvation = 28.547343 kcal Electronic energy + Delta-G solvation = -19377.549955 eV Core-core repulsion = 16171.089733 eV Total energy + Delta-G solvation = -3206.460222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.30921 -38.12328 -36.83231 -36.17277 -33.77988 -33.17447 -32.03310 -28.92447 -26.39290 -25.33932 -24.02149 -21.24865 -20.58487 -19.82193 -19.35855 -18.77768 -17.30021 -16.26910 -16.02529 -15.29701 -14.94855 -14.69429 -14.24985 -14.04948 -13.91326 -13.42556 -13.26513 -12.80591 -12.64994 -12.08366 -11.65719 -11.58993 -11.47215 -11.03114 -11.01074 -10.99887 -10.58740 -10.41913 -10.28011 -9.71170 -9.50439 -9.09249 -8.73491 -8.57697 -8.42708 -8.17949 -7.75067 -6.12574 -4.22692 0.81733 1.17281 1.72367 2.36191 2.41252 3.01165 3.23421 3.29969 3.31028 3.64537 4.30513 4.58116 4.68016 5.16112 5.28792 5.31447 5.43276 5.77036 5.96016 6.08615 6.27508 6.42748 6.49922 6.66004 6.68868 6.77644 7.06068 7.17627 7.26811 7.34505 7.49385 7.76399 8.28114 8.40509 8.78493 8.91907 9.45026 10.94802 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.018224 B = 0.003943 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.056179 B = 7100.349359 C = 7830.716463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.076 3.924 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.504 4.504 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.180 3.820 11 N -0.708 5.708 12 C 0.700 3.300 13 O -0.583 6.583 14 N -0.672 5.672 15 C 0.154 3.846 16 C -0.234 4.234 17 S 0.139 5.861 18 C -0.203 4.203 19 C -0.062 4.062 20 Cl -0.049 7.049 21 C -0.210 4.210 22 C -0.145 4.145 23 H 0.263 0.737 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.401 0.599 27 H 0.408 0.592 28 H 0.209 0.791 29 H 0.176 0.824 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.619 -8.832 12.827 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.024 3.976 10 C 0.057 3.943 11 N -0.359 5.359 12 C 0.400 3.600 13 O -0.463 6.463 14 N -0.319 5.319 15 C 0.047 3.953 16 C -0.374 4.374 17 S 0.398 5.602 18 C -0.340 4.340 19 C -0.105 4.105 20 Cl -0.021 7.021 21 C -0.247 4.247 22 C -0.184 4.184 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.059 0.941 26 H 0.236 0.764 27 H 0.243 0.757 28 H 0.226 0.774 29 H 0.193 0.807 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.668 -9.650 14.129 18.024 hybrid contribution 2.334 2.183 -1.433 3.502 sum 8.002 -7.467 12.696 16.762 Atomic orbital electron populations 1.69964 1.05890 1.27092 1.47857 1.24977 0.94804 0.98932 0.94185 0.86700 0.79685 0.83216 0.78639 1.20256 1.21235 1.20160 1.20292 0.92589 0.88543 1.52682 0.92227 1.19028 0.99240 0.93084 0.86213 1.20900 0.84829 0.98687 0.89896 1.45176 1.13615 1.67638 1.09507 1.15938 0.83233 0.79266 0.81561 1.90686 1.25523 1.56519 1.73586 1.42573 1.12578 1.63584 1.13155 1.16094 0.93293 0.99663 0.86225 1.26285 1.04792 1.07602 0.98689 1.84293 1.06013 1.57126 1.12728 1.25315 1.01716 1.06358 1.00617 1.19442 0.89240 1.06473 0.95353 1.98365 1.27169 1.81787 1.94779 1.23012 0.99847 0.95728 1.06110 1.22488 0.91362 1.01711 1.02812 0.92732 0.91223 0.94072 0.76407 0.75672 0.77428 0.80680 0.90394 0.91616 0.91696 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.68 12.85 55.43 0.71 -22.97 16 2 C 0.08 1.96 5.44 -17.82 -0.10 1.86 16 3 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.50 -12.52 8.21 -34.44 -0.28 -12.81 16 8 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 9 C 0.03 0.57 1.50 -155.66 -0.23 0.34 16 10 C 0.18 3.95 5.54 -4.04 -0.02 3.93 16 11 N -0.71 -13.51 5.43 -65.22 -0.35 -13.86 16 12 C 0.70 13.07 8.49 -86.91 -0.74 12.34 16 13 O -0.58 -12.36 13.22 5.27 0.07 -12.29 16 14 N -0.67 -10.31 5.44 -15.17 -0.08 -10.40 16 15 C 0.15 2.24 6.56 -85.05 -0.56 1.68 16 16 C -0.23 -3.41 9.99 29.17 0.29 -3.12 16 17 S 0.14 1.47 23.33 -107.50 -2.51 -1.03 16 18 C -0.20 -2.08 11.07 29.05 0.32 -1.76 16 19 C -0.06 -0.76 6.28 -41.04 -0.26 -1.02 16 20 Cl -0.05 -0.55 28.26 -51.86 -1.47 -2.01 16 21 C -0.21 -4.26 9.94 -26.73 -0.27 -4.52 16 22 C -0.15 -3.24 9.42 -26.73 -0.25 -3.49 16 23 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 24 H 0.07 1.75 8.14 -51.93 -0.42 1.32 16 25 H 0.04 0.88 8.10 -51.93 -0.42 0.46 16 26 H 0.40 7.07 8.08 -40.82 -0.33 6.74 16 27 H 0.41 5.39 7.97 -40.82 -0.33 5.07 16 28 H 0.21 3.49 5.43 -52.49 -0.28 3.20 16 29 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 LS Contribution 316.34 15.07 4.77 4.77 Total: -1.00 -27.81 316.34 -9.42 -37.23 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -3.44 Total: 11.97 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -2.09 Total: -6.56 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.28 Total: -47.23 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.07 Total: -12.29 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.51 Total: -1.03 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.47 Total: -2.01 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.81 -9.42 -37.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603170082.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.779 kcal (2) G-P(sol) polarization free energy of solvation -27.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds