Wall clock time and date at job start Tue Mar 31 2020 07:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00209 * 2 1 4 4 H 1.48500 * 109.47222 * 270.00309 * 3 2 1 5 5 H 1.48502 * 109.47063 * 30.00195 * 3 2 1 6 6 H 1.48498 * 109.47203 * 149.99600 * 3 2 1 7 7 C 1.37878 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99919 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00354 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47166 * 179.97438 * 9 7 2 11 11 S 1.81403 * 109.47148 * 179.97438 * 10 9 7 12 12 O 1.42104 * 110.54038 * 62.67224 * 11 10 9 13 13 O 1.42098 * 110.54406 * 285.92581 * 11 10 9 14 14 O 1.52202 * 104.45137 * 174.29690 * 11 10 9 15 15 C 1.35637 * 113.99932 * 75.41844 * 14 11 10 16 16 C 1.38712 * 120.15396 * 274.99138 * 15 14 11 17 17 C 1.38046 * 120.08907 * 180.02562 * 16 15 14 18 18 C 1.38561 * 120.40265 * 359.95937 * 17 16 15 19 19 C 1.37761 * 120.30903 * 359.97438 * 18 17 16 20 20 C 1.39763 * 119.90562 * 0.02562 * 19 18 17 21 21 C 1.47394 * 120.20354 * 179.97438 * 20 19 18 22 22 O 1.21508 * 120.00407 * 185.48525 * 21 20 19 23 23 O 1.34753 * 119.99407 * 5.48825 * 21 20 19 24 24 H 0.96998 * 119.99875 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46720 * 59.99706 * 9 7 2 26 26 H 1.08994 * 109.46580 * 299.99809 * 9 7 2 27 27 H 1.09001 * 109.47240 * 59.99847 * 10 9 7 28 28 H 1.09003 * 109.47350 * 299.99818 * 10 9 7 29 29 H 1.08004 * 119.95532 * 0.02562 * 16 15 14 30 30 H 1.08006 * 119.79418 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.84311 * 180.02562 * 18 17 16 32 32 H 1.08010 * 120.04456 * 179.75103 * 19 18 17 33 33 H 0.96702 * 117.00049 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 16 1.3382 -5.2331 0.0013 12 8 0.5595 -5.3598 -1.1806 13 8 0.7731 -5.4820 1.2811 14 8 2.4184 -6.2954 -0.1452 15 6 3.1316 -6.5167 0.9870 16 6 4.2239 -5.7173 1.2900 17 6 4.9492 -5.9441 2.4424 18 6 4.5933 -6.9686 3.3047 19 6 3.5106 -7.7718 3.0207 20 6 2.7672 -7.5536 1.8575 21 6 1.6080 -8.4092 1.5469 22 8 1.0251 -8.2820 0.4884 23 8 1.1946 -9.3327 2.4370 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8905 28 1 2.8719 -3.6044 -0.8895 29 1 4.5074 -4.9162 0.6233 30 1 5.7991 -5.3190 2.6734 31 1 5.1668 -7.1378 4.2041 32 1 3.2394 -8.5717 3.6939 33 1 0.4303 -9.8705 2.1887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738428716.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:23 Heat of formation + Delta-G solvation = -169.132758 kcal Electronic energy + Delta-G solvation = -22584.190803 eV Core-core repulsion = 18896.156612 eV Total energy + Delta-G solvation = -3688.034191 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 300.059 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.45186 -39.72563 -38.14390 -36.69764 -36.13453 -35.57703 -33.98276 -31.94844 -31.24255 -30.60907 -25.77377 -25.11960 -23.63158 -22.01962 -21.73572 -20.14447 -18.36370 -18.20408 -17.68506 -17.19143 -16.95278 -16.33636 -15.63191 -15.50932 -15.26935 -14.92803 -14.60640 -14.38301 -13.59347 -13.46205 -13.22479 -12.99646 -12.55824 -12.35386 -12.12229 -11.85376 -11.70440 -11.64118 -11.62266 -11.55255 -11.11641 -11.00770 -10.68692 -10.45334 -10.43782 -9.78025 -9.50095 -9.33414 -9.11581 -8.53142 -6.15021 -4.21228 0.07851 0.54030 1.02060 2.34215 2.43382 2.77076 3.24333 3.30422 3.31575 3.32659 4.10181 4.26071 4.34585 4.40105 4.51040 4.63700 4.77075 4.88364 5.06286 5.20050 5.40824 5.47865 5.56531 5.70076 5.76271 5.92147 5.98013 6.32570 6.37289 6.42507 7.24772 7.31419 7.74238 7.77036 8.12933 8.81653 9.43603 10.96084 Molecular weight = 300.06amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.004687 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.747381 B = 5972.645877 C = 6769.489930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.031 3.969 10 C -0.617 4.617 11 S 2.577 3.423 12 O -0.924 6.924 13 O -0.961 6.961 14 O -0.661 6.661 15 C 0.148 3.852 16 C -0.149 4.149 17 C -0.061 4.061 18 C -0.125 4.125 19 C -0.046 4.046 20 C -0.111 4.111 21 C 0.529 3.471 22 O -0.495 6.495 23 O -0.511 6.511 24 H 0.266 0.734 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.156 0.844 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.151 0.849 33 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.017 -16.253 8.017 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.008 4.008 10 C -0.748 4.748 11 S 2.676 3.324 12 O -0.923 6.923 13 O -0.959 6.959 14 O -0.618 6.618 15 C 0.105 3.895 16 C -0.169 4.169 17 C -0.079 4.079 18 C -0.144 4.144 19 C -0.064 4.064 20 C -0.115 4.115 21 C 0.372 3.628 22 O -0.382 6.382 23 O -0.323 6.323 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.141 0.859 28 H 0.145 0.855 29 H 0.173 0.827 30 H 0.165 0.835 31 H 0.161 0.839 32 H 0.169 0.831 33 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 10.489 -16.483 7.629 20.974 hybrid contribution 0.158 1.155 -0.388 1.229 sum 10.647 -15.328 7.240 20.018 Atomic orbital electron populations 1.69957 1.06142 1.27284 1.49342 1.25073 0.94980 0.99569 0.94836 0.86448 0.79652 0.82776 0.78274 1.20422 1.20983 1.19749 1.20978 0.93047 0.89611 1.52442 0.91952 1.18957 0.92502 0.90199 0.99140 1.30846 1.14458 1.19064 1.10435 1.06124 0.75192 0.76378 0.74692 1.93582 1.65097 1.84892 1.48687 1.93563 1.76283 1.82856 1.43210 1.85767 1.61135 1.72072 1.42829 1.17998 0.92649 0.96215 0.82610 1.21571 0.94714 1.00868 0.99722 1.21349 0.98412 0.96160 0.91960 1.21341 0.97284 0.95327 1.00430 1.21445 0.92876 0.98481 0.93646 1.19160 0.96916 0.97928 0.97446 1.20443 0.82949 0.78186 0.81233 1.90962 1.55082 1.67258 1.24930 1.84491 1.51187 1.48136 1.48500 0.92454 0.94457 0.94784 0.85853 0.85468 0.82682 0.83523 0.83922 0.83121 0.72393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 9 C 0.03 0.79 4.98 -27.88 -0.14 0.65 16 10 C -0.62 -12.20 5.05 37.15 0.19 -12.01 16 11 S 2.58 53.64 4.67 -107.50 -0.50 53.13 16 12 O -0.92 -22.46 18.09 -67.04 -1.21 -23.67 16 13 O -0.96 -21.17 15.64 -67.78 -1.06 -22.23 16 14 O -0.66 -12.05 8.35 -54.04 -0.45 -12.50 16 15 C 0.15 2.27 4.72 -38.67 -0.18 2.08 16 16 C -0.15 -1.72 8.47 -39.48 -0.33 -2.05 16 17 C -0.06 -0.51 10.03 -39.53 -0.40 -0.90 16 18 C -0.13 -0.95 10.02 -39.64 -0.40 -1.35 16 19 C -0.05 -0.45 9.61 -39.19 -0.38 -0.82 16 20 C -0.11 -1.57 5.40 -104.87 -0.57 -2.14 16 21 C 0.53 8.05 7.71 34.46 0.27 8.32 16 22 O -0.49 -9.44 15.18 -27.30 -0.41 -9.86 16 23 O -0.51 -5.32 12.69 -40.64 -0.52 -5.84 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.12 2.09 6.61 -51.92 -0.34 1.74 16 28 H 0.13 2.21 8.14 -51.92 -0.42 1.78 16 29 H 0.16 1.52 7.05 -52.48 -0.37 1.15 16 30 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 31 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 32 H 0.15 1.06 7.62 -52.48 -0.40 0.66 16 33 H 0.42 2.50 9.11 45.56 0.42 2.91 16 LS Contribution 306.31 15.07 4.62 4.62 Total: -1.00 -38.63 306.31 -8.53 -47.16 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -2.35 Total: 0.21 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -2.35 Total: -21.28 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.74 Total: -25.66 kcal Atomic # 8 Polarization: -70.44 SS G_CDS: -3.65 Total: -74.10 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 53.64 SS G_CDS: -0.50 Total: 53.13 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -38.63 -8.53 -47.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738428716.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.978 kcal (2) G-P(sol) polarization free energy of solvation -38.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds