Wall clock time and date at job start Tue Mar 31 2020 07:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00209 * 2 1 4 4 H 1.48500 * 109.47222 * 270.00309 * 3 2 1 5 5 H 1.48502 * 109.47063 * 30.00195 * 3 2 1 6 6 H 1.48498 * 109.47203 * 149.99600 * 3 2 1 7 7 C 1.37878 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99919 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00354 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47166 * 179.97438 * 9 7 2 11 11 S 1.81403 * 109.47148 * 179.97438 * 10 9 7 12 12 O 1.42104 * 110.54038 * 62.67224 * 11 10 9 13 13 O 1.42098 * 110.54406 * 285.92581 * 11 10 9 14 14 O 1.52202 * 104.45137 * 174.29690 * 11 10 9 15 15 C 1.35637 * 113.99932 * 75.41844 * 14 11 10 16 16 C 1.38712 * 120.15396 * 274.99138 * 15 14 11 17 17 C 1.38046 * 120.08907 * 180.02562 * 16 15 14 18 18 C 1.38561 * 120.40265 * 359.95937 * 17 16 15 19 19 C 1.37761 * 120.30903 * 359.97438 * 18 17 16 20 20 C 1.39763 * 119.90562 * 0.02562 * 19 18 17 21 21 C 1.47394 * 120.20354 * 179.97438 * 20 19 18 22 22 O 1.21508 * 120.00407 * 185.48525 * 21 20 19 23 23 O 1.34753 * 119.99407 * 5.48825 * 21 20 19 24 24 H 0.96998 * 119.99875 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46720 * 59.99706 * 9 7 2 26 26 H 1.08994 * 109.46580 * 299.99809 * 9 7 2 27 27 H 1.09001 * 109.47240 * 59.99847 * 10 9 7 28 28 H 1.09003 * 109.47350 * 299.99818 * 10 9 7 29 29 H 1.08004 * 119.95532 * 0.02562 * 16 15 14 30 30 H 1.08006 * 119.79418 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.84311 * 180.02562 * 18 17 16 32 32 H 1.08010 * 120.04456 * 179.75103 * 19 18 17 33 33 H 0.96702 * 117.00049 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 16 1.3382 -5.2331 0.0013 12 8 0.5595 -5.3598 -1.1806 13 8 0.7731 -5.4820 1.2811 14 8 2.4184 -6.2954 -0.1452 15 6 3.1316 -6.5167 0.9870 16 6 4.2239 -5.7173 1.2900 17 6 4.9492 -5.9441 2.4424 18 6 4.5933 -6.9686 3.3047 19 6 3.5106 -7.7718 3.0207 20 6 2.7672 -7.5536 1.8575 21 6 1.6080 -8.4092 1.5469 22 8 1.0251 -8.2820 0.4884 23 8 1.1946 -9.3327 2.4370 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8905 28 1 2.8719 -3.6044 -0.8895 29 1 4.5074 -4.9162 0.6233 30 1 5.7991 -5.3190 2.6734 31 1 5.1668 -7.1378 4.2041 32 1 3.2394 -8.5717 3.6939 33 1 0.4303 -9.8705 2.1887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738428716.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:23 Heat of formation + Delta-G solvation = -199.134763 kcal Electronic energy + Delta-G solvation = -22585.491787 eV Core-core repulsion = 18896.156612 eV Total energy + Delta-G solvation = -3689.335175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 300.059 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.55603 -40.85959 -39.06023 -38.38877 -37.29084 -37.17883 -35.97266 -33.32400 -32.64434 -31.49451 -27.74058 -26.07438 -24.72609 -23.50067 -23.04608 -21.34952 -19.66231 -19.36727 -19.08642 -18.55436 -18.23595 -18.02820 -16.79582 -16.65493 -16.53748 -16.51944 -15.99124 -15.36947 -15.21855 -14.57468 -14.40178 -14.34244 -14.13439 -13.80897 -13.45563 -13.42479 -13.28179 -13.10476 -12.94862 -12.83405 -12.72644 -12.42665 -12.31068 -12.14768 -11.82133 -11.74193 -11.16283 -10.65210 -10.31144 -10.08079 -8.25816 -6.40836 -1.20151 -0.46347 0.04039 1.06467 1.36093 1.43283 1.45622 1.56623 1.86450 2.38469 2.49226 2.57203 2.87090 3.08168 3.44246 3.61475 3.83363 3.88286 3.92509 4.03194 4.15930 4.30373 4.62102 4.72345 4.89425 4.95212 5.14300 5.19233 5.20429 5.25350 5.41767 5.67060 5.68244 6.02082 6.72516 6.78932 7.29789 8.86994 Molecular weight = 300.06amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.004687 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.747381 B = 5972.645877 C = 6769.489930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.978 3.022 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.251 1.251 7 C -0.537 4.537 8 H 0.084 0.916 9 C 0.023 3.977 10 C -0.603 4.603 11 S 2.589 3.411 12 O -0.978 6.978 13 O -0.983 6.983 14 O -0.660 6.660 15 C 0.090 3.910 16 C -0.155 4.155 17 C -0.050 4.050 18 C -0.103 4.103 19 C -0.041 4.041 20 C -0.145 4.145 21 C 0.523 3.477 22 O -0.550 6.550 23 O -0.492 6.492 24 H 0.267 0.733 25 H 0.005 0.995 26 H 0.010 0.990 27 H 0.158 0.842 28 H 0.154 0.846 29 H 0.169 0.831 30 H 0.191 0.809 31 H 0.192 0.808 32 H 0.177 0.823 33 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.090 -15.896 10.525 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.802 3.198 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.175 1.175 7 C -0.576 4.576 8 H 0.102 0.898 9 C -0.016 4.016 10 C -0.734 4.734 11 S 2.691 3.309 12 O -0.976 6.976 13 O -0.981 6.981 14 O -0.619 6.619 15 C 0.048 3.952 16 C -0.175 4.175 17 C -0.067 4.067 18 C -0.121 4.121 19 C -0.059 4.059 20 C -0.148 4.148 21 C 0.369 3.631 22 O -0.443 6.443 23 O -0.306 6.306 24 H 0.076 0.924 25 H 0.023 0.977 26 H 0.028 0.972 27 H 0.176 0.824 28 H 0.172 0.828 29 H 0.187 0.813 30 H 0.208 0.792 31 H 0.210 0.790 32 H 0.195 0.805 33 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 14.556 -16.163 10.157 24.006 hybrid contribution -0.983 0.881 -0.986 1.648 sum 13.573 -15.283 9.170 22.402 Atomic orbital electron populations 1.70122 1.08300 1.28428 1.50773 1.26174 0.95832 1.04083 0.94242 0.85245 0.78779 0.77250 0.78570 1.19838 1.21031 1.17453 1.21496 0.94243 0.90118 1.51704 0.89766 1.18829 0.93399 0.92787 0.96574 1.30638 1.13439 1.15810 1.13466 1.05575 0.75297 0.76718 0.73296 1.93501 1.67661 1.85939 1.50482 1.93501 1.77359 1.83415 1.43826 1.85714 1.60887 1.70815 1.44444 1.18710 0.94549 0.98989 0.82921 1.21958 0.93750 1.00635 1.01196 1.21965 0.98440 0.96209 0.90091 1.21983 0.95719 0.93179 1.01208 1.21879 0.92711 0.99317 0.92023 1.19482 0.97688 0.98349 0.99309 1.20960 0.82979 0.78375 0.80802 1.90934 1.57046 1.69030 1.27245 1.84446 1.51920 1.47283 1.46965 0.92376 0.97672 0.97216 0.82425 0.82823 0.81324 0.79171 0.79047 0.80549 0.70330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.07 13.29 21.45 0.28 -56.78 16 2 C -0.01 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.98 42.30 29.54 68.60 2.03 44.33 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 7 C -0.54 -29.19 9.11 25.60 0.23 -28.96 16 8 H 0.08 4.09 7.74 -2.91 -0.02 4.07 16 9 C 0.02 1.21 4.98 29.85 0.15 1.36 16 10 C -0.60 -23.77 5.05 71.98 0.36 -23.41 16 11 S 2.59 112.92 4.67 -56.49 -0.26 112.65 16 12 O -0.98 -51.01 18.09 -118.57 -2.15 -53.16 16 13 O -0.98 -45.39 15.64 -117.86 -1.84 -47.23 16 14 O -0.66 -24.99 8.35 -55.63 -0.46 -25.45 16 15 C 0.09 2.72 4.72 22.86 0.11 2.83 16 16 C -0.16 -3.15 8.47 22.34 0.19 -2.96 16 17 C -0.05 -0.56 10.03 22.30 0.22 -0.34 16 18 C -0.10 -0.98 10.02 22.23 0.22 -0.75 16 19 C -0.04 -0.66 9.61 22.53 0.22 -0.44 16 20 C -0.14 -3.98 5.40 -20.02 -0.11 -4.09 16 21 C 0.52 16.34 7.71 70.23 0.54 16.88 16 22 O -0.55 -22.41 15.18 27.49 0.42 -21.99 16 23 O -0.49 -10.00 12.69 -56.63 -0.72 -10.72 16 24 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 25 H 0.00 0.29 8.14 -2.39 -0.02 0.27 16 26 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.16 5.04 6.61 -2.39 -0.02 5.03 16 28 H 0.15 5.19 8.14 -2.39 -0.02 5.17 16 29 H 0.17 2.77 7.05 -2.91 -0.02 2.75 16 30 H 0.19 0.54 8.06 -2.91 -0.02 0.52 16 31 H 0.19 0.04 8.06 -2.91 -0.02 0.02 16 32 H 0.18 1.77 7.62 -2.91 -0.02 1.75 16 33 H 0.43 5.12 9.11 -74.06 -0.67 4.44 16 Total: -1.00 -90.91 306.31 0.38 -90.53 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 0.49 Total: 7.52 kcal Atomic # 6 Polarization: -42.29 SS G_CDS: 2.60 Total: -39.69 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.28 Total: -56.78 kcal Atomic # 8 Polarization: -153.80 SS G_CDS: -4.75 Total: -158.55 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: 112.92 SS G_CDS: -0.26 Total: 112.65 kcal Total: -90.91 0.38 -90.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738428716.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.610 kcal (2) G-P(sol) polarization free energy of solvation -90.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds