Wall clock time and date at job start Tue Mar 31 2020 07:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 119.99315 * 2 1 4 4 C 1.38226 * 120.02877 * 179.72773 * 3 2 1 5 5 C 1.38237 * 120.00663 * 0.54938 * 4 3 2 6 6 C 1.50703 * 120.00464 * 179.75044 * 5 4 3 7 7 O 1.45199 * 109.46928 * 359.72233 * 6 5 4 8 8 C 1.34230 * 116.99614 * 179.97438 * 7 6 5 9 9 O 1.20824 * 120.00179 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99717 * 179.97438 * 8 7 6 11 11 S 1.81001 * 109.47096 * 180.02562 * 10 8 7 12 12 C 1.76203 * 100.00081 * 180.02562 * 11 10 8 13 13 H 1.07996 * 119.99869 * 0.02562 * 12 11 10 14 14 C 1.38797 * 119.99847 * 179.97438 * 12 11 10 15 15 N 1.31636 * 120.00248 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99731 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46734 * 60.00211 * 16 14 12 18 18 H 1.48499 * 109.46912 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47343 * 300.00296 * 16 14 12 20 20 C 1.38336 * 119.98984 * 359.47280 * 5 4 3 21 21 Cl 1.73590 * 120.01462 * 180.27651 * 20 5 4 22 22 C 1.38186 * 119.99233 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.47034 * 269.97863 * 1 2 3 24 24 H 1.09001 * 109.47163 * 29.97633 * 1 2 3 25 25 H 1.08992 * 109.47183 * 149.97800 * 1 2 3 26 26 H 1.08000 * 119.99123 * 0.02562 * 3 2 1 27 27 H 1.07995 * 120.00078 * 180.29954 * 4 3 2 28 28 H 1.09002 * 109.47152 * 239.72265 * 6 5 4 29 29 H 1.09001 * 109.46980 * 119.72366 * 6 5 4 30 30 H 1.09000 * 109.47303 * 300.00327 * 10 8 7 31 31 H 1.09003 * 109.46535 * 60.00663 * 10 8 7 32 32 H 0.96998 * 119.99512 * 179.97438 * 15 14 12 33 33 H 1.07999 * 120.01110 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1983 0.0057 5 6 4.2725 0.0017 -0.0001 6 6 5.7796 0.0027 0.0004 7 8 6.2626 1.3720 0.0008 8 6 7.5932 1.5488 0.0019 9 8 8.3298 0.5911 0.0019 10 6 8.1682 2.9418 0.0018 11 16 9.9758 2.8483 0.0025 12 6 10.3710 4.5655 0.0031 13 1 9.5807 5.3014 0.0033 14 6 11.6981 4.9721 0.0043 15 7 12.6614 4.0751 0.0045 16 14 12.1170 6.7926 0.0041 17 1 11.5446 7.4322 1.2159 18 1 13.5924 6.9609 0.0049 19 1 11.5470 7.4316 -1.2091 20 6 3.5816 -1.1967 -0.0006 21 17 4.4500 -2.6998 -0.0006 22 6 2.1978 -1.1968 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8897 -0.5141 26 1 1.6579 2.1326 0.0004 27 1 4.1198 2.1339 0.0106 28 1 6.1436 -0.5107 -0.8896 29 1 6.1429 -0.5110 0.8904 30 1 7.8326 3.4734 -0.8887 31 1 7.8312 3.4740 0.8914 32 1 13.5888 4.3594 0.0049 33 1 1.6578 -2.1321 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773393650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:33 Heat of formation + Delta-G solvation = -79.827625 kcal Electronic energy + Delta-G solvation = -18368.970480 eV Core-core repulsion = 15125.518015 eV Total energy + Delta-G solvation = -3243.452465 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.037 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35583 -39.55047 -36.77969 -36.31739 -33.58872 -32.49657 -31.05908 -30.13708 -28.69296 -25.60182 -24.95181 -23.24434 -21.41094 -20.75565 -17.99775 -17.32274 -16.90327 -16.47086 -15.82865 -15.76345 -15.06038 -14.85608 -14.56131 -14.08628 -14.06797 -13.85338 -13.36882 -12.97179 -12.81184 -12.67076 -12.35119 -12.11745 -11.85104 -11.53276 -11.48170 -11.11405 -11.07239 -11.01964 -10.83632 -10.69543 -10.07192 -9.93011 -9.12745 -9.11877 -8.80741 -8.38114 -6.61959 -6.28287 -4.01366 0.79895 0.95388 1.83495 2.54128 2.61869 3.21044 3.21976 3.26016 3.26380 3.46844 4.13514 4.28698 4.49846 4.56847 4.84333 4.88020 5.05827 5.07411 5.13482 5.20413 5.22931 5.33795 5.39064 5.50020 5.53039 5.74027 5.74873 5.86426 6.04685 6.09129 6.16198 6.50317 6.64209 7.53809 8.11055 8.28864 9.16967 10.79132 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.028744 B = 0.002754 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.899037 B =10165.383036 C =11113.532544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.078 4.078 3 C -0.115 4.115 4 C -0.081 4.081 5 C -0.084 4.084 6 C 0.107 3.893 7 O -0.359 6.359 8 C 0.480 3.520 9 O -0.484 6.484 10 C -0.128 4.128 11 S -0.057 6.057 12 C -0.537 4.537 13 H 0.076 0.924 14 C 0.075 3.925 15 N -0.867 5.867 16 Si 0.922 3.078 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.273 1.273 20 C -0.027 4.027 21 Cl -0.064 7.064 22 C -0.111 4.111 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.131 0.869 27 H 0.146 0.854 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.270 0.730 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.159 -8.284 0.019 25.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.078 4.078 3 C -0.133 4.133 4 C -0.099 4.099 5 C -0.085 4.085 6 C 0.033 3.967 7 O -0.277 6.277 8 C 0.321 3.679 9 O -0.369 6.369 10 C -0.276 4.276 11 S 0.169 5.831 12 C -0.685 4.685 13 H 0.094 0.906 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.748 3.252 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.054 4.054 21 Cl -0.035 7.035 22 C -0.129 4.129 23 H 0.092 0.908 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.149 0.851 27 H 0.163 0.837 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.986 -9.693 0.017 24.946 hybrid contribution -0.378 1.889 0.005 1.927 sum -23.363 -7.803 0.023 24.632 Atomic orbital electron populations 1.20804 0.90431 1.03138 1.02677 1.19904 0.96443 0.92456 0.98999 1.21203 0.94083 0.97913 1.00120 1.21095 0.93816 0.97990 0.97031 1.19479 0.94499 0.92347 1.02184 1.21623 0.89488 0.81718 1.03828 1.86432 1.25704 1.30457 1.85115 1.23326 0.79518 0.92593 0.72433 1.90684 1.59745 1.42660 1.43819 1.23303 1.05668 0.92092 1.06517 1.85447 0.89638 1.11133 1.96892 1.22797 0.95014 0.91126 1.59566 0.90615 1.25007 0.95124 0.99062 0.94318 1.70002 1.00079 1.33682 1.46450 0.86173 0.77451 0.82696 0.78903 1.19833 1.20771 1.19837 1.20610 0.92480 0.86442 1.05836 1.98390 1.76615 1.31764 1.96772 1.20839 0.91375 0.98817 1.01900 0.90807 0.91118 0.91309 0.85124 0.83678 0.89370 0.89369 0.87835 0.87838 0.91990 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.01 36.01 0.36 -0.24 16 2 C -0.08 -0.63 5.88 -104.63 -0.62 -1.25 16 3 C -0.12 -1.00 9.70 -39.58 -0.38 -1.39 16 4 C -0.08 -0.87 9.38 -39.59 -0.37 -1.24 16 5 C -0.08 -1.00 5.88 -104.58 -0.62 -1.61 16 6 C 0.11 1.48 4.83 36.01 0.17 1.65 16 7 O -0.36 -5.58 8.69 -39.26 -0.34 -5.92 16 8 C 0.48 9.09 7.98 36.01 0.29 9.38 16 9 O -0.48 -10.59 15.61 -18.75 -0.29 -10.88 16 10 C -0.13 -2.56 6.27 36.01 0.23 -2.33 16 11 S -0.06 -1.52 20.58 -107.50 -2.21 -3.73 16 12 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 13 H 0.08 1.98 7.80 -52.49 -0.41 1.57 16 14 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 16 Si 0.92 21.02 29.55 -169.99 -5.02 16.00 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 20 C -0.03 -0.29 6.31 -39.49 -0.25 -0.54 16 21 Cl -0.06 -0.69 27.99 -51.86 -1.45 -2.14 16 22 C -0.11 -0.99 9.49 -39.55 -0.38 -1.37 16 23 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.07 0.31 8.09 -51.93 -0.42 -0.10 16 25 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 26 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 27 H 0.15 1.54 6.99 -52.49 -0.37 1.17 16 28 H 0.09 1.22 8.13 -51.93 -0.42 0.80 16 29 H 0.09 1.22 8.13 -51.93 -0.42 0.80 16 30 H 0.10 1.90 8.14 -51.92 -0.42 1.48 16 31 H 0.10 1.90 8.14 -51.92 -0.42 1.48 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 323.76 15.07 4.88 4.88 Total: -1.00 -31.79 323.76 -8.78 -40.58 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -3.71 Total: -2.22 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -1.36 Total: -11.60 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.73 Total: -24.95 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.63 Total: -16.81 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.45 Total: -2.14 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.79 -8.78 -40.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773393650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.252 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds