Wall clock time and date at job start Tue Mar 31 2020 07:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 119.99315 * 2 1 4 4 C 1.38226 * 120.02877 * 179.72773 * 3 2 1 5 5 C 1.38237 * 120.00663 * 0.54938 * 4 3 2 6 6 C 1.50703 * 120.00464 * 179.75044 * 5 4 3 7 7 O 1.45199 * 109.46928 * 359.72233 * 6 5 4 8 8 C 1.34230 * 116.99614 * 179.97438 * 7 6 5 9 9 O 1.20824 * 120.00179 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99717 * 179.97438 * 8 7 6 11 11 S 1.81001 * 109.47096 * 180.02562 * 10 8 7 12 12 C 1.76203 * 100.00081 * 180.02562 * 11 10 8 13 13 H 1.07996 * 119.99869 * 0.02562 * 12 11 10 14 14 C 1.38797 * 119.99847 * 179.97438 * 12 11 10 15 15 N 1.31636 * 120.00248 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99731 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46734 * 60.00211 * 16 14 12 18 18 H 1.48499 * 109.46912 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47343 * 300.00296 * 16 14 12 20 20 C 1.38336 * 119.98984 * 359.47280 * 5 4 3 21 21 Cl 1.73590 * 120.01462 * 180.27651 * 20 5 4 22 22 C 1.38186 * 119.99233 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.47034 * 269.97863 * 1 2 3 24 24 H 1.09001 * 109.47163 * 29.97633 * 1 2 3 25 25 H 1.08992 * 109.47183 * 149.97800 * 1 2 3 26 26 H 1.08000 * 119.99123 * 0.02562 * 3 2 1 27 27 H 1.07995 * 120.00078 * 180.29954 * 4 3 2 28 28 H 1.09002 * 109.47152 * 239.72265 * 6 5 4 29 29 H 1.09001 * 109.46980 * 119.72366 * 6 5 4 30 30 H 1.09000 * 109.47303 * 300.00327 * 10 8 7 31 31 H 1.09003 * 109.46535 * 60.00663 * 10 8 7 32 32 H 0.96998 * 119.99512 * 179.97438 * 15 14 12 33 33 H 1.07999 * 120.01110 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1983 0.0057 5 6 4.2725 0.0017 -0.0001 6 6 5.7796 0.0027 0.0004 7 8 6.2626 1.3720 0.0008 8 6 7.5932 1.5488 0.0019 9 8 8.3298 0.5911 0.0019 10 6 8.1682 2.9418 0.0018 11 16 9.9758 2.8483 0.0025 12 6 10.3710 4.5655 0.0031 13 1 9.5807 5.3014 0.0033 14 6 11.6981 4.9721 0.0043 15 7 12.6614 4.0751 0.0045 16 14 12.1170 6.7926 0.0041 17 1 11.5446 7.4322 1.2159 18 1 13.5924 6.9609 0.0049 19 1 11.5470 7.4316 -1.2091 20 6 3.5816 -1.1967 -0.0006 21 17 4.4500 -2.6998 -0.0006 22 6 2.1978 -1.1968 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8897 -0.5141 26 1 1.6579 2.1326 0.0004 27 1 4.1198 2.1339 0.0106 28 1 6.1436 -0.5107 -0.8896 29 1 6.1429 -0.5110 0.8904 30 1 7.8326 3.4734 -0.8887 31 1 7.8312 3.4740 0.8914 32 1 13.5888 4.3594 0.0049 33 1 1.6578 -2.1321 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773393650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:33 Heat of formation + Delta-G solvation = -96.288251 kcal Electronic energy + Delta-G solvation = -18369.684266 eV Core-core repulsion = 15125.518015 eV Total energy + Delta-G solvation = -3244.166251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.037 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.66670 -40.47733 -37.72681 -37.58714 -34.60649 -34.40243 -31.79436 -31.58015 -29.63398 -27.70606 -25.82019 -24.06249 -22.48880 -21.85312 -19.92615 -18.74183 -18.03946 -17.85316 -16.89589 -16.77474 -16.62344 -16.21968 -15.81290 -15.64682 -14.81887 -14.70034 -14.61573 -14.35582 -13.89538 -13.59388 -13.47509 -13.20296 -13.10318 -12.86715 -12.68466 -12.59757 -12.34492 -12.20226 -11.95633 -11.85289 -11.78796 -11.66224 -11.14010 -10.38120 -9.87618 -9.57202 -8.73891 -8.36905 -6.17021 0.03659 0.21305 0.95364 1.03461 1.07812 1.40779 1.45480 1.54175 1.81023 2.24370 2.52181 2.98177 3.22313 3.41345 3.68356 3.89590 3.92170 4.07714 4.08587 4.19063 4.25267 4.34079 4.43668 4.55426 4.76858 4.87603 4.91396 5.06687 5.14879 5.25509 5.39787 5.41436 5.51855 5.81689 6.18393 6.61578 7.04677 8.72071 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.028744 B = 0.002754 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.899037 B =10165.383036 C =11113.532544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.072 4.072 3 C -0.114 4.114 4 C -0.093 4.093 5 C -0.105 4.105 6 C 0.109 3.891 7 O -0.343 6.343 8 C 0.489 3.511 9 O -0.519 6.519 10 C -0.106 4.106 11 S -0.140 6.140 12 C -0.548 4.548 13 H 0.088 0.912 14 C 0.015 3.985 15 N -0.911 5.911 16 Si 1.000 3.000 17 H -0.261 1.261 18 H -0.280 1.280 19 H -0.261 1.261 20 C -0.037 4.037 21 Cl -0.072 7.072 22 C -0.113 4.113 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.156 0.844 27 H 0.143 0.857 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.272 0.728 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.979 -6.793 0.017 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.072 4.072 3 C -0.131 4.131 4 C -0.111 4.111 5 C -0.106 4.106 6 C 0.035 3.965 7 O -0.260 6.260 8 C 0.332 3.668 9 O -0.407 6.407 10 C -0.254 4.254 11 S 0.087 5.913 12 C -0.695 4.695 13 H 0.106 0.894 14 C -0.190 4.190 15 N -0.547 5.547 16 Si 0.821 3.179 17 H -0.186 1.186 18 H -0.205 1.205 19 H -0.186 1.186 20 C -0.063 4.063 21 Cl -0.043 7.043 22 C -0.131 4.131 23 H 0.103 0.897 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.174 0.826 27 H 0.161 0.839 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.081 0.919 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -25.844 -8.205 0.015 27.115 hybrid contribution 0.301 1.341 0.007 1.375 sum -25.543 -6.863 0.022 26.449 Atomic orbital electron populations 1.20888 0.88010 1.04345 1.03712 1.20305 0.98131 0.91789 0.96992 1.21506 0.93288 0.99371 0.98972 1.21183 0.94939 0.97329 0.97653 1.19376 0.93020 0.93495 1.04706 1.21719 0.91187 0.80205 1.03377 1.86403 1.23446 1.31873 1.84281 1.23069 0.80358 0.91741 0.71674 1.90680 1.60843 1.43559 1.45574 1.23089 1.00513 0.93276 1.08561 1.85589 0.96273 1.12238 1.97190 1.23162 0.95761 0.91247 1.59344 0.89410 1.26135 0.94918 1.04396 0.93554 1.70165 1.00535 1.36280 1.47700 0.84978 0.77232 0.76063 0.79586 1.18573 1.20474 1.18587 1.20739 0.93247 0.85797 1.06538 1.98385 1.76960 1.32108 1.96852 1.21138 0.90603 1.00205 1.01161 0.89691 0.89874 0.90246 0.82611 0.83942 0.89975 0.89969 0.85684 0.85682 0.91870 0.82896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 71.24 0.71 -0.07 16 2 C -0.07 -0.97 5.88 -19.87 -0.12 -1.08 16 3 C -0.11 -1.69 9.70 22.27 0.22 -1.47 16 4 C -0.09 -1.86 9.38 22.27 0.21 -1.65 16 5 C -0.11 -2.43 5.88 -19.84 -0.12 -2.55 16 6 C 0.11 3.02 4.83 71.24 0.34 3.37 16 7 O -0.34 -10.53 8.69 -51.42 -0.45 -10.97 16 8 C 0.49 18.53 7.98 71.24 0.57 19.10 16 9 O -0.52 -23.28 15.61 21.97 0.34 -22.94 16 10 C -0.11 -4.17 6.27 71.24 0.45 -3.72 16 11 S -0.14 -7.55 20.58 -56.49 -1.16 -8.71 16 12 C -0.55 -30.44 9.50 67.95 0.65 -29.80 16 13 H 0.09 4.49 7.80 -2.91 -0.02 4.47 16 14 C 0.02 0.84 5.49 84.86 0.47 1.30 16 15 N -0.91 -54.90 13.22 21.65 0.29 -54.61 16 16 Si 1.00 42.65 29.55 68.60 2.03 44.67 16 17 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 18 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 20 C -0.04 -0.76 6.31 22.33 0.14 -0.62 16 21 Cl -0.07 -1.54 27.99 -2.72 -0.08 -1.62 16 22 C -0.11 -1.79 9.49 22.29 0.21 -1.58 16 23 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 24 H 0.08 0.41 8.09 -2.39 -0.02 0.39 16 25 H 0.08 0.42 8.08 -2.39 -0.02 0.40 16 26 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 27 H 0.14 2.84 6.99 -2.91 -0.02 2.82 16 28 H 0.08 2.35 8.13 -2.39 -0.02 2.33 16 29 H 0.08 2.35 8.13 -2.39 -0.02 2.33 16 30 H 0.13 4.40 8.14 -2.40 -0.02 4.38 16 31 H 0.13 4.40 8.14 -2.39 -0.02 4.38 16 32 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -69.78 323.76 5.82 -63.95 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.12 Total: 8.99 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 3.73 Total: -18.77 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.29 Total: -54.61 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.10 Total: -33.91 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -1.16 Total: -8.71 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -69.78 5.82 -63.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773393650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.334 kcal (2) G-P(sol) polarization free energy of solvation -69.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds